prot_S-firma_F_contig1008.156.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1008.156.1
Unique Nameprot_S-firma_F_contig1008.156.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length240
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1008.156.1 vs. uniprot
Match: A0A6H5KT04_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT04_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 5.200e-39
Identity = 122/215 (56.74%), Postives = 136/215 (63.26%), Query Frame = 0 
Query:   17 RRRRSRPWLGFATLVSLAICCARPVADAFVSPQARVARLSALGKTNSNGLPSAARVTSHRFRSATGLQRSVARANR---LSMRLPSATVVVTVEAQDNQESRGG-RRKAFRARLGALFRG-AGEDARLERAVHVASRWLRAAKRAASKRALTVALAVALAFPSLSAAPRYATGGAGGGGDFAVGGASSAHPAVELVLPSSGSDTAAAAAAERSTP 226
            RRRRS P  GFA LV   + CA PVA AFVSP+A+VARLSALGK+N  G P    VTSHRFR A    +  + + R      RL                     RRKAFRAR+GALFRG A  D RLERA ++ S WLRAAKR ASKRALTVALA  LAFPSLSA PR + GG  GG   A GGA SAHPAVELVLP S +    AAAAE++TP
Sbjct:   18 RRRRSHPARGFAMLVWAVLYCATPVAVAFVSPKAQVARLSALGKSNPLGKPG---VTSHRFRLAETTAKHSSSSGRDTGTGRRLXXXXXXXXXXXXXXXXXXXXXRRKAFRARVGALFRGTAVGDTRLERAAYLTSCWLRAAKRVASKRALTVALAFTLAFPSLSA-PRISPGGTEGG--LAAGGAGSAHPAVELVLPFSEN----AAAAEQATP 222
[Close]
BLAST of mRNA_S-firma_F_contig1008.156.1 vs. uniprot
Match: D8LS49_ECTSI (Similarity to sodium/hydrogen exchanger and potassium exchanger n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS49_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 6.330e-31
Identity = 107/204 (52.45%), Postives = 122/204 (59.80%), Query Frame = 0 
Query:   30 LVSLAICCARPVADAFVSPQARVARLSALGKTNSNGLPSAARVTSHRFRSATGLQ-----RSVARANRLSMRLPSATVVVTVEAQDNQESRGGRRKAFRARLGALFRG-AGEDARLERAVHVASRWLRAAKRAASKRALTVALAVALAFPSLSAAPRYATGGAGGGGDFAVGGASSAHPAVELVLPSSGSDTAAAAAAERSTPA 227
            LV   +CCA PVA AFVSP+ARVARLSALGK+N  G P    VTSHR+ + T        R+     RL MR+ SA     V+AQ   E RG RRKAFRAR+GALFRG A  D RLERA ++AS WLRAA+R ASKRALTV                            A GGA SAHPAVELVLP S +    AAAAE++TPA
Sbjct:    2 LVWAVLCCATPVAVAFVSPKARVARLSALGKSNPVGKPG---VTSHRWAATTAKHGSSSGRATGTGRRLHMRMGSAA---PVDAQAVGEGRGRRRKAFRARVGALFRGTAAGDTRLERATYLASYWLRAARRVASKRALTVXXXXXXXXXXXXXXXXXXXXXXX---XLAAGGAGSAHPAVELVLPFSEN----AAAAEQATPA 192
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1008.156.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT04_9PHAE5.200e-3956.74Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
D8LS49_ECTSI6.330e-3152.45Similarity to sodium/hydrogen exchanger and potass... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..44
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 25..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 37..44
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 45..240
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..24
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..44
score: 0.551

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1008contigS-firma_F_contig1008:21809..23876 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1008.156.1mRNA_S-firma_F_contig1008.156.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1008 21632..23876 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1008.156.1 ID=prot_S-firma_F_contig1008.156.1|Name=mRNA_S-firma_F_contig1008.156.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=240bp
MSPSSTGGQGMPRPSRRRRRSRPWLGFATLVSLAICCARPVADAFVSPQA
RVARLSALGKTNSNGLPSAARVTSHRFRSATGLQRSVARANRLSMRLPSA
TVVVTVEAQDNQESRGGRRKAFRARLGALFRGAGEDARLERAVHVASRWL
RAAKRAASKRALTVALAVALAFPSLSAAPRYATGGAGGGGDFAVGGASSA
HPAVELVLPSSGSDTAAAAAAERSTPAWAGRAPKLLQQEQ
back to top