mRNA_S-firma_F_contig1008.156.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1008.156.1
Unique NamemRNA_S-firma_F_contig1008.156.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1008.156.1 vs. uniprot
Match: A0A6H5KT04_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT04_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.100e-38
Identity = 122/215 (56.74%), Postives = 136/215 (63.26%), Query Frame = 1 
Query:  226 RRRRSRPWLGFATLVSLAICCARPVADAFVSPQARVARLSALGKTNSNGLPSAARVTSHRFRSATGLQRSVARANR---LSMRLPSATVVVTVEAQDNQESRGG-RRKAFRARLGALFRG-AGEDARLERAVHVASRWLRAAKRAASKRALTVALAVALAFPSLSAAPRYATGGAGGGGDFAVGGASSAHPAVELVLPSSGSDTAAAAAAERSTP 855
            RRRRS P  GFA LV   + CA PVA AFVSP+A+VARLSALGK+N  G P    VTSHRFR A    +  + + R      RL                     RRKAFRAR+GALFRG A  D RLERA ++ S WLRAAKR ASKRALTVALA  LAFPSLSA PR + GG  GG   A GGA SAHPAVELVLP S +    AAAAE++TP
Sbjct:   18 RRRRSHPARGFAMLVWAVLYCATPVAVAFVSPKAQVARLSALGKSNPLGKPG---VTSHRFRLAETTAKHSSSSGRDTGTGRRLXXXXXXXXXXXXXXXXXXXXXRRKAFRARVGALFRGTAVGDTRLERAAYLTSCWLRAAKRVASKRALTVALAFTLAFPSLSA-PRISPGGTEGG--LAAGGAGSAHPAVELVLPFSEN----AAAAEQATP 222
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BLAST of mRNA_S-firma_F_contig1008.156.1 vs. uniprot
Match: D8LS49_ECTSI (Similarity to sodium/hydrogen exchanger and potassium exchanger n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS49_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 3.460e-30
Identity = 107/204 (52.45%), Postives = 122/204 (59.80%), Query Frame = 1 
Query:  265 LVSLAICCARPVADAFVSPQARVARLSALGKTNSNGLPSAARVTSHRFRSATGLQ-----RSVARANRLSMRLPSATVVVTVEAQDNQESRGGRRKAFRARLGALFRG-AGEDARLERAVHVASRWLRAAKRAASKRALTVALAVALAFPSLSAAPRYATGGAGGGGDFAVGGASSAHPAVELVLPSSGSDTAAAAAAERSTPA 858
            LV   +CCA PVA AFVSP+ARVARLSALGK+N  G P    VTSHR+ + T        R+     RL MR+ SA     V+AQ   E RG RRKAFRAR+GALFRG A  D RLERA ++AS WLRAA+R ASKRALTV                            A GGA SAHPAVELVLP S +    AAAAE++TPA
Sbjct:    2 LVWAVLCCATPVAVAFVSPKARVARLSALGKSNPVGKPG---VTSHRWAATTAKHGSSSGRATGTGRRLHMRMGSAA---PVDAQAVGEGRGRRRKAFRARVGALFRGTAAGDTRLERATYLASYWLRAARRVASKRALTVXXXXXXXXXXXXXXXXXXXXXXX---XLAAGGAGSAHPAVELVLPFSEN----AAAAEQATPA 192
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1008.156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT04_9PHAE3.100e-3856.74Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
D8LS49_ECTSI3.460e-3052.45Similarity to sodium/hydrogen exchanger and potass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1008contigS-firma_F_contig1008:21632..23876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LS49
PFAMsNa_H_Exchanger,TrkA_N
Max annot lvl2759|Eukaryota
Evalue1.04e-31
EggNOG OGsCOG0475@1|root,KOG1650@2759|Eukaryota
Descriptionsolute:proton antiporter activity
COG categoryP
Hectar predicted targeting categoryother localisation
Exons3
Model size898
Cds size720
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1008.156.1prot_S-firma_F_contig1008.156.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1008 21809..23876 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.5636299-UTR-S-firma_F_contig1008:21631..218081622815533.5636299-UTR-S-firma_F_contig1008:21631..21808Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1008 21632..21808 +
1696949395.2935302-UTR-S-firma_F_contig1008:21631..218081696949395.2935302-UTR-S-firma_F_contig1008:21631..21808Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1008 21632..21808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.5760598-CDS-S-firma_F_contig1008:21808..220831622815533.5760598-CDS-S-firma_F_contig1008:21808..22083Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1008 21809..22083 +
1696949395.312413-CDS-S-firma_F_contig1008:21808..220831696949395.312413-CDS-S-firma_F_contig1008:21808..22083Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1008 21809..22083 +
1622815533.5886595-CDS-S-firma_F_contig1008:23054..231991622815533.5886595-CDS-S-firma_F_contig1008:23054..23199Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1008 23055..23199 +
1696949395.3302846-CDS-S-firma_F_contig1008:23054..231991696949395.3302846-CDS-S-firma_F_contig1008:23054..23199Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1008 23055..23199 +
1622815533.6007664-CDS-S-firma_F_contig1008:23576..238761622815533.6007664-CDS-S-firma_F_contig1008:23576..23876Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1008 23577..23876 +
1696949395.344068-CDS-S-firma_F_contig1008:23576..238761696949395.344068-CDS-S-firma_F_contig1008:23576..23876Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1008 23577..23876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1008.156.1

>prot_S-firma_F_contig1008.156.1 ID=prot_S-firma_F_contig1008.156.1|Name=mRNA_S-firma_F_contig1008.156.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=240bp
MSPSSTGGQGMPRPSRRRRRSRPWLGFATLVSLAICCARPVADAFVSPQA
RVARLSALGKTNSNGLPSAARVTSHRFRSATGLQRSVARANRLSMRLPSA
TVVVTVEAQDNQESRGGRRKAFRARLGALFRGAGEDARLERAVHVASRWL
RAAKRAASKRALTVALAVALAFPSLSAAPRYATGGAGGGGDFAVGGASSA
HPAVELVLPSSGSDTAAAAAAERSTPAWAGRAPKLLQQEQ
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mRNA from alignment at S-firma_F_contig1008:21632..23876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1008.156.1 ID=mRNA_S-firma_F_contig1008.156.1|Name=mRNA_S-firma_F_contig1008.156.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2245bp|location=Sequence derived from alignment at S-firma_F_contig1008:21632..23876+ (Sphaerotrichia firma ET2_F female)
TGATAGCGTTGCGAGCTCGGCTAGCCACTATCCACGACGCCGAGACAGAG
CGAACGCGTCAGGGGTGTGCGAGAGAGATAGAGGGGTTTGCGGAGGCGTC
GGTTGGAGAGCTAGGTGGTGACCACGGGAAGGTGGACCGAACAAAAGGCC
AAGTAAAAGTGATTGCACCAAGCAATCATGAGTCCTTCCTCGACCGGAGG
GCAGGGCATGCCTCGTCCCAGCCGGCGCCGAAGGCGTAGCCGCCCCTGGT
TGGGCTTTGCCACGCTCGTCTCGTTGGCCATATGTTGTGCAAGGCCTGTG
GCTGATGCTTTCGTCAGTCCCCAGGCCCGAGTTGCGCGGCTGTCGGCGCT
TGGGAAGACGAACAGCAACGGATTGCCTTCGGCGGCACGAGTGACGAGTC
ATCGTTTTCGGTCAGCAACTGGGCTGCAACGCAGCGTTGCGCGAGCTAAC
AGGTGTGTGTGCTCGGAGAAGAGCCCGTCGCGCATCGGTGATTTTCATAC
ACGCACATTGTTGGCTCGTCGTTGAGCAGGGCGGCAACGGTCAGAGCAAC
GGCGAAACGGTGGTTGTGTTGACCCATCGGTCGAGTGCCTGCTTCGTCCC
CCTTGCTGCCCATTTCGATTTCGATTGACGACGCGTCGCCGTCTGAGCGA
GCGAACACCAACCAACAGAACTTCTGCGTAGCAGTAGTTGACAACCACTG
CGCACCCTGTATGGGCATCCCAATCGCACCAGGTTGGGTATGACGGTCGG
TGCAATGAACCGATATGAAAGAGGCAGGTTGCAGGTTGCAGGTTGGCACA
GGAGGGTTTCACAGAGTGATTCGGTGAATCTACGGTTCGCCCAGGAGCTC
CGCAGCGCGCACGCTGACCGGTGGTAGCACGGAGTGTGGCTCCTGTAGAA
GCTGGGTTTATCTTCTTGCAACTGGCACTCACGCTTTTTTGTGGGCCTGG
TCAGCTACAGGGTCGCCACCGGTTTTCGTTTTTCAAGTGTCAAACCTTGT
TGCTGATCTGGTTTGAAAGTTGAGAGAGAGCGGCACTGCTGCTGCTGGTT
TGTGGCTTGGGGGCCGACACACTCACGTCTCACAGCTGCGTGCGACAGCT
TCGTCAGGGCACCGCAGGTGCTGCACCGCCGTGTCACCCACCGTGTAGTG
CATGGGCTCTCTGCACGAACACAAGCTGTCCTTTTCGGGTGCAAGTGGAT
TGAGATGTGGCAGCATTTTCTAGGATCGTCACAGCAGTCGTGTTTTTTCG
AAATCCTCTCGCTTACCCTTGTTTCTTTTCCCAAGCCATGTGCGTGTCTG
CTTGCAATAAGTGGATTGCCTCCGCGGCAGAACACGTCATCATCTTTTTT
TTGAAGATTACTGAGAAGCCCTCCACGGCACGAACGTGTGTGCTGCTTGC
GATCCCGCCCTGCCTGTTTCCAGATTGTCCATGCGGTTGCCCTCTGCGAC
TGTTGTAGTAACCGTGGAAGCGCAGGACAACCAGGAGAGTAGAGGTGGGC
GGCGCAAGGCCTTTCGCGCACGATTGGGGGCGCTGTTCCGTGGTGCTGGA
GAGGACGCGAGACTCGAGGTAAGCCACTGGTCGCAATAGCGATCTCACAC
CCCACAGCAGCTGCAGCAGCCGGTTTAACAACCACTGCTGTTGAAGATGT
ATCTCGGACCCACCGAGCAGGGTGCTCAATGTACTCGTGCGACTTATGTG
TATCCACGAAGAGGCACGGGTGAGACAGGGCTCTGATGATACCGTTCGGC
AAGTTGGCACATCGAAGAATGTTTGCAAACCCCAGCCTTTTATTTTCATT
CTTTGCTGAAGGCACTCCTTGTAGCACCCCCCCCTGCACACCGAGAGCAC
AACCTCCGCCTGCAGTACCCCTACTCGCACACTCGCACCCGTTCCAACCC
TTCCACCCCCCCCCCACCGCAAAAAAAAAATGCCTACCAAAACAGAGAGC
AGTACACGTGGCATCGCGCTGGCTGCGGGCAGCGAAGCGCGCCGCAAGCA
AGCGCGCGCTCACCGTCGCCCTCGCGGTCGCGCTGGCCTTCCCCTCGCTG
AGCGCCGCCCCGCGGTACGCGACGGGGGGGGCGGGGGGCGGGGGGGATTT
TGCGGTCGGCGGCGCCAGTAGTGCGCACCCGGCCGTCGAGCTCGTGCTCC
CTTCCTCCGGGAGCGATACTGCTGCCGCTGCTGCTGCCGAGCGATCAACG
CCAGCATGGGCGGGGCGGGCGCCGAAGCTGCTGCAACAGGAGCAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1008:21632..23876+

>mRNA_S-firma_F_contig1008.156.1 ID=mRNA_S-firma_F_contig1008.156.1|Name=mRNA_S-firma_F_contig1008.156.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1440bp|location=Sequence derived from alignment at S-firma_F_contig1008:21632..23876+ (Sphaerotrichia firma ET2_F female)
ATGAGTCCTTCCTCGACCGGAGGGCAGGGCATGCCTCGTCCCAGCCGGCG
CCGAAGGCGTAGCCGCCCCTGGTTGGGCTTTGCCACGCTCGTCTCGTTGG
CCATATGTTGTGCAAGGCCTGTGGCTGATGCTTTCGTCAGTCCCCAGGCC
CGAGTTGCGCGGCTGTCGGCGCTTGGGAAGACGAACAGCAACGGATTGCC
TTCGGCGGCACGAGTGACGAGTCATCGTTTTCGGTCAGCAACTGGGCTGC
AACGCAGCGTTGCGCGAGCTAACAGATGAGTCCTTCCTCGACCGGAGGGC
AGGGCATGCCTCGTCCCAGCCGGCGCCGAAGGCGTAGCCGCCCCTGGTTG
GGCTTTGCCACGCTCGTCTCGTTGGCCATATGTTGTGCAAGGCCTGTGGC
TGATGCTTTCGTCAGTCCCCAGGCCCGAGTTGCGCGGCTGTCGGCGCTTG
GGAAGACGAACAGCAACGGATTGCCTTCGGCGGCACGAGTGACGAGTCAT
CGTTTTCGGTCAGCAACTGGGCTGCAACGCAGCGTTGCGCGAGCTAACAG
ATTGTCCATGCGGTTGCCCTCTGCGACTGTTGTAGTAACCGTGGAAGCGC
AGGACAACCAGGAGAGTAGAGGTGGGCGGCGCAAGGCCTTTCGCGCACGA
TTGGGGGCGCTGTTCCGTGGTGCTGGAGAGGACGCGAGACTCGAGATTGT
CCATGCGGTTGCCCTCTGCGACTGTTGTAGTAACCGTGGAAGCGCAGGAC
AACCAGGAGAGTAGAGGTGGGCGGCGCAAGGCCTTTCGCGCACGATTGGG
GGCGCTGTTCCGTGGTGCTGGAGAGGACGCGAGACTCGAGAGAGCAGTAC
ACGTGGCATCGCGCTGGCTGCGGGCAGCGAAGCGCGCCGCAAGCAAGCGC
GCGCTCACCGTCGCCCTCGCGGTCGCGCTGGCCTTCCCCTCGCTGAGCGC
CGCCCCGCGGTACGCGACGGGGGGGGCGGGGGGCGGGGGGGATTTTGCGG
TCGGCGGCGCCAGTAGTGCGCACCCGGCCGTCGAGCTCGTGCTCCCTTCC
TCCGGGAGCGATACTGCTGCCGCTGCTGCTGCCGAGCGATCAACGCCAGC
ATGGGCGGGGCGGGCGCCGAAGCTGCTGCAACAGGAGCAGAGAGCAGTAC
ACGTGGCATCGCGCTGGCTGCGGGCAGCGAAGCGCGCCGCAAGCAAGCGC
GCGCTCACCGTCGCCCTCGCGGTCGCGCTGGCCTTCCCCTCGCTGAGCGC
CGCCCCGCGGTACGCGACGGGGGGGGCGGGGGGCGGGGGGGATTTTGCGG
TCGGCGGCGCCAGTAGTGCGCACCCGGCCGTCGAGCTCGTGCTCCCTTCC
TCCGGGAGCGATACTGCTGCCGCTGCTGCTGCCGAGCGATCAACGCCAGC
ATGGGCGGGGCGGGCGCCGAAGCTGCTGCAACAGGAGCAG
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