mRNA_S-firma_F_contig11126.1492.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11126.1492.1
Unique NamemRNA_S-firma_F_contig11126.1492.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11126.1492.1 vs. uniprot
Match: A0A6H5K3N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3N3_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.450e-55
Identity = 97/139 (69.78%), Postives = 108/139 (77.70%), Query Frame = 1 
Query:  175 MGTSSQHGLHVGGTTVSSPYAQSTNRPPKFRVRVYNDRLFQSLLEDGGKSSTSPRSFGRSVKSRPLHPPQENRCEAMLKAGAFAKKKRREKQYMLQLTQQQLLXXXXXXXRLLETAASKEREFVRLSGEVVEGKVYVAD 591
            MG S+ HGL  GGT   SPYAQ +NRPP FRVRVYND LF+SLL+DG  SSTSPRS GRS KSRP  PPQE+R EAMLKAGA AKKKRREKQY+ QLTQQQLL       +LLE AASKEREFVRLSGE+  G+ +V +
Sbjct:    1 MGASNHHGLGSGGTNACSPYAQPSNRPPAFRVRVYNDGLFKSLLDDGRTSSTSPRSLGRSAKSRPSRPPQEDRSEAMLKAGALAKKKRREKQYLFQLTQQQLLQDRLVRDKLLEAAASKEREFVRLSGEIEAGRTFVKE 139
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BLAST of mRNA_S-firma_F_contig11126.1492.1 vs. uniprot
Match: D8LIN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN6_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.010e-15
Identity = 45/63 (71.43%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:  403 MLKAGAFAKKKRREKQYMLQLTQQQLLXXXXXXXRLLETAASKEREFVRLSGEVVEGKVYVAD 591
            MLKAGA AKKKRREKQY+LQLTQQQLL       +LLE AASKEREFVRLSGEV  G+ +V +
Sbjct:    1 MLKAGALAKKKRREKQYLLQLTQQQLLQDRLVRDKLLEAAASKEREFVRLSGEVEAGRTFVKE 63
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11126.1492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3N3_9PHAE1.450e-5569.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIN6_ECTSI1.010e-1571.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11126contigS-firma_F_contig11126:3692..4735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LIN6
Max annot lvl2759|Eukaryota
Evalue1.65e-16
EggNOG OGs29M9N@1|root,2RUJB@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_004560.1
Exons2
Model size601
Cds size600
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.4184031-CDS-S-firma_F_contig11126:3691..40561622815662.4184031-CDS-S-firma_F_contig11126:3691..4056Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11126 3692..4056 +
1696949486.7883186-CDS-S-firma_F_contig11126:3691..40561696949486.7883186-CDS-S-firma_F_contig11126:3691..4056Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11126 3692..4056 +
1622815662.43196-CDS-S-firma_F_contig11126:4500..47351622815662.43196-CDS-S-firma_F_contig11126:4500..4735Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11126 4501..4735 +
1696949486.802068-CDS-S-firma_F_contig11126:4500..47351696949486.802068-CDS-S-firma_F_contig11126:4500..4735Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11126 4501..4735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11126.1492.1prot_S-firma_F_contig11126.1492.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11126 3692..4735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11126.1492.1

>prot_S-firma_F_contig11126.1492.1 ID=prot_S-firma_F_contig11126.1492.1|Name=mRNA_S-firma_F_contig11126.1492.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=200bp
PATYTPPVSALPGGLEGVQRDGCGRTAACGPGATSLCFSACSLPVPGTRR
CADYRTCGMGTSSQHGLHVGGTTVSSPYAQSTNRPPKFRVRVYNDRLFQS
LLEDGGKSSTSPRSFGRSVKSRPLHPPQENRCEAMLKAGAFAKKKRREKQ
YMLQLTQQQLLQDRLVSDRLLETAASKEREFVRLSGEVVEGKVYVADTV*
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mRNA from alignment at S-firma_F_contig11126:3692..4735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11126.1492.1 ID=mRNA_S-firma_F_contig11126.1492.1|Name=mRNA_S-firma_F_contig11126.1492.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1044bp|location=Sequence derived from alignment at S-firma_F_contig11126:3692..4735+ (Sphaerotrichia firma ET2_F female)
CCTGCTACATACACACCTCCAGTTTCTGCTCTTCCAGGGGGCTTGGAGGG
CGTTCAGCGAGACGGGTGTGGACGTACGGCAGCCTGTGGGCCGGGCGCTA
CCTCTCTCTGTTTCTCCGCGTGTTCCCTCCCTGTTCCTGGCACAAGAAGG
TGTGCTGATTATAGGACCTGTGGGATGGGAACCTCGAGTCAGCATGGCCT
ACACGTTGGAGGCACCACCGTAAGCTCACCTTACGCTCAGTCGACAAATC
GACCGCCGAAGTTCCGCGTTCGTGTATACAACGACCGGTTGTTCCAGTCC
CTGCTGGAAGATGGCGGGAAGTCTTCCACCTCTCCCAGGTCCTTCGGTCG
ATCTGTCAAGTCCAGGTCTGGTGTACCTCTGCTGCTGTAGGGATGACAGG
GCTCTGGTTGAACCTTTTGGCTCGCTTTCTAGCCATACGTGCAGGGACCA
ACAACCGATCGCAGCAGTGTGCCCTCGGCATTTTGCCAAATGCAGTGCTT
CATCCGCGAGGAAGAGGTTGCGAACTGCTGTTGACCACAACGCGTGGAGG
TTTAGAAGTTTGAAGCGACTCGGTCAGAAGTTGCGTGTCGGCGTGAAGAA
GCAAATACTCCCCTCTGGGACTGTCAGGACACAGCCACTGTAGTACTTAC
AACGGTGTCGCACACGATACGTGGTCGGTACGTTGTGCAGGGTTCCGGCT
ACACTCGTTGTACTGAAACAGCAGCTGATTTTTCCTTTGTTGTGCATCCT
ATTTTGACCAATCGAGATGACGCTCTCTCTCCGCTGGTTCGTGCCGTCTG
CCGCGACAGACCACTCCACCCACCACAGGAGAACCGATGTGAGGCCATGC
TCAAAGCCGGGGCGTTCGCAAAGAAGAAGCGGCGCGAGAAGCAGTACATG
CTGCAGCTTACGCAGCAGCAGCTTTTGCAGGACAGGCTTGTGAGCGACCG
GCTGCTGGAGACGGCTGCCAGTAAGGAGCGAGAGTTTGTCAGGCTTTCCG
GCGAGGTGGTAGAAGGTAAGGTTTACGTTGCAGACACCGTATGA
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Coding sequence (CDS) from alignment at S-firma_F_contig11126:3692..4735+

>mRNA_S-firma_F_contig11126.1492.1 ID=mRNA_S-firma_F_contig11126.1492.1|Name=mRNA_S-firma_F_contig11126.1492.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1200bp|location=Sequence derived from alignment at S-firma_F_contig11126:3692..4735+ (Sphaerotrichia firma ET2_F female)
CCTGCTACATACACACCTCCAGTTTCTGCTCTTCCAGGGGGCTTGGAGGG
CGTTCAGCGAGACGGGTGTGGACGTACGGCAGCCTGTGGGCCGGGCGCTA
CCTCTCTCTGTTTCTCCGCGTGTTCCCTCCCTGTTCCTGGCACAAGAAGG
TGTGCTGATTATAGGACCTGTGGGATGGGAACCTCGAGTCAGCATGGCCT
ACACGTTGGAGGCACCACCGTAAGCTCACCTTACGCTCAGTCGACAAATC
GACCGCCGAAGTTCCGCGTTCGTGTATACAACGACCGGTTGTTCCAGTCC
CTGCTGGAAGATGGCGGGAAGTCTTCCACCTCTCCCAGGTCCTTCGGTCG
ATCTGTCAAGTCCAGCCTGCTACATACACACCTCCAGTTTCTGCTCTTCC
AGGGGGCTTGGAGGGCGTTCAGCGAGACGGGTGTGGACGTACGGCAGCCT
GTGGGCCGGGCGCTACCTCTCTCTGTTTCTCCGCGTGTTCCCTCCCTGTT
CCTGGCACAAGAAGGTGTGCTGATTATAGGACCTGTGGGATGGGAACCTC
GAGTCAGCATGGCCTACACGTTGGAGGCACCACCGTAAGCTCACCTTACG
CTCAGTCGACAAATCGACCGCCGAAGTTCCGCGTTCGTGTATACAACGAC
CGGTTGTTCCAGTCCCTGCTGGAAGATGGCGGGAAGTCTTCCACCTCTCC
CAGGTCCTTCGGTCGATCTGTCAAGTCCAGACCACTCCACCCACCACAGG
AGAACCGATGTGAGGCCATGCTCAAAGCCGGGGCGTTCGCAAAGAAGAAG
CGGCGCGAGAAGCAGTACATGCTGCAGCTTACGCAGCAGCAGCTTTTGCA
GGACAGGCTTGTGAGCGACCGGCTGCTGGAGACGGCTGCCAGTAAGGAGC
GAGAGTTTGTCAGGCTTTCCGGCGAGGTGGTAGAAGGTAAGGTTTACGTT
GCAGACACCGTATGAACCACTCCACCCACCACAGGAGAACCGATGTGAGG
CCATGCTCAAAGCCGGGGCGTTCGCAAAGAAGAAGCGGCGCGAGAAGCAG
TACATGCTGCAGCTTACGCAGCAGCAGCTTTTGCAGGACAGGCTTGTGAG
CGACCGGCTGCTGGAGACGGCTGCCAGTAAGGAGCGAGAGTTTGTCAGGC
TTTCCGGCGAGGTGGTAGAAGGTAAGGTTTACGTTGCAGACACCGTATGA
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