mRNA_S-firma_F_contig11095.1450.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11095.1450.1
Unique NamemRNA_S-firma_F_contig11095.1450.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11095.1450.1 vs. uniprot
Match: A0A6H5JAD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD8_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 5.610e-73
Identity = 107/133 (80.45%), Postives = 119/133 (89.47%), Query Frame = 1 
Query:  319 FAAAFAKVEQALGLSPLDHAEAMGLDVWEVGGSSGTIAGFQGKKVDWVSRCTFQEADGSSRECLRAWVMPMFDVPHLSISIGSGPNGLTAEMDLISKDDLMYAKAYREQYYGGRTSAWWSALVQNVQAAPTKV 717
            FAAAF+ VEQAL LSPLDHAEAMGL+ WE  GSSGTIAGF+GKKVDWVSRCT  EADGS+RECLRAWVMPMFDVPHLSI++GSGPNGLTAEMDL++KDD+MYAKAYREQYYGG T+AWW A++QN    P KV
Sbjct:   16 FAAAFSMVEQALELSPLDHAEAMGLETWEAAGSSGTIAGFKGKKVDWVSRCTINEADGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWEAIMQNPNVVPAKV 148
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BLAST of mRNA_S-firma_F_contig11095.1450.1 vs. uniprot
Match: D8LIG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG6_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 1.760e-69
Identity = 103/132 (78.03%), Postives = 116/132 (87.88%), Query Frame = 1 
Query:  319 FAAAFAKVEQALGLSPLDHAEAMGLDVWEVGGSSGTIAGFQGKKVDWVSRCTFQEADGSSRECLRAWVMPMFDVPHLSISIGSGPNGLTAEMDLISKDDLMYAKAYREQYYGGRTSAWWSALVQNVQAAPTK 714
            FAAAF+ VEQAL LSPLDHAEAMGL+ WE  GSSGTIAGF+G+KVDWVS CT  E DGS+RECLRAWVMPMFDVPHLSI++GSGPNGLTAEMDL++KDD+MYAKAYREQYYGG T+AWW A++QN    P K
Sbjct:  159 FAAAFSMVEQALELSPLDHAEAMGLETWEAAGSSGTIAGFKGRKVDWVSHCTINEPDGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWDAIMQNPNVVPAK 290
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11095.1450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAD8_9PHAE5.610e-7380.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIG6_ECTSI1.760e-6978.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11095contigS-firma_F_contig11095:598..4551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LIG6
Max annot lvl2759|Eukaryota
Evalue2.88e-70
EggNOG OGs2CHM3@1|root,2T2RF@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRed chlorophyll catabolite reductase
Ec32 orthologEc-18_003740.1
Exons6
Model size729
Cds size729
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11095.1450.1prot_S-firma_F_contig11095.1450.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11095 598..4551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.1983397-CDS-S-firma_F_contig11095:597..7061622815658.1983397-CDS-S-firma_F_contig11095:597..706Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11095 598..706 -
1696949483.7771719-CDS-S-firma_F_contig11095:597..7061696949483.7771719-CDS-S-firma_F_contig11095:597..706Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11095 598..706 -
1622815658.2157323-CDS-S-firma_F_contig11095:1348..13911622815658.2157323-CDS-S-firma_F_contig11095:1348..1391Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11095 1349..1391 -
1696949483.7883325-CDS-S-firma_F_contig11095:1348..13911696949483.7883325-CDS-S-firma_F_contig11095:1348..1391Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11095 1349..1391 -
1622815658.2288296-CDS-S-firma_F_contig11095:2410..24681622815658.2288296-CDS-S-firma_F_contig11095:2410..2468Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11095 2411..2468 -
1696949483.7987943-CDS-S-firma_F_contig11095:2410..24681696949483.7987943-CDS-S-firma_F_contig11095:2410..2468Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11095 2411..2468 -
1622815658.2398424-CDS-S-firma_F_contig11095:2782..28511622815658.2398424-CDS-S-firma_F_contig11095:2782..2851Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11095 2783..2851 -
1696949483.807424-CDS-S-firma_F_contig11095:2782..28511696949483.807424-CDS-S-firma_F_contig11095:2782..2851Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11095 2783..2851 -
1622815658.2510629-CDS-S-firma_F_contig11095:3779..39221622815658.2510629-CDS-S-firma_F_contig11095:3779..3922Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11095 3780..3922 -
1696949483.815418-CDS-S-firma_F_contig11095:3779..39221696949483.815418-CDS-S-firma_F_contig11095:3779..3922Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11095 3780..3922 -
1622815658.2604508-CDS-S-firma_F_contig11095:4244..45511622815658.2604508-CDS-S-firma_F_contig11095:4244..4551Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11095 4245..4551 -
1696949483.8313658-CDS-S-firma_F_contig11095:4244..45511696949483.8313658-CDS-S-firma_F_contig11095:4244..4551Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11095 4245..4551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11095.1450.1

>prot_S-firma_F_contig11095.1450.1 ID=prot_S-firma_F_contig11095.1450.1|Name=mRNA_S-firma_F_contig11095.1450.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=243bp
PPGAFVSDPRAPPGAKISDPRAPPGATVSDPRAPPGARVSDPRAPPAGGG
GVSAPGGVSAPGGVSAPAGVSDPRAVAAAAPAYAPPPPQVGGGGGGGASS
GEAGAGFAAAFAKVEQALGLSPLDHAEAMGLDVWEVGGSSGTIAGFQGKK
VDWVSRCTFQEADGSSRECLRAWVMPMFDVPHLSISIGSGPNGLTAEMDL
ISKDDLMYAKAYREQYYGGRTSAWWSALVQNVQAAPTKVRNA*
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mRNA from alignment at S-firma_F_contig11095:598..4551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11095.1450.1 ID=mRNA_S-firma_F_contig11095.1450.1|Name=mRNA_S-firma_F_contig11095.1450.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3954bp|location=Sequence derived from alignment at S-firma_F_contig11095:598..4551- (Sphaerotrichia firma ET2_F female)
CCCCCGGGTGCCTTTGTGTCCGACCCTCGTGCGCCGCCGGGTGCCAAAAT
TTCTGACCCTCGCGCGCCGCCAGGTGCCACAGTTTCCGATCCGCGGGCTC
CCCCGGGTGCCAGAGTTTCTGACCCGCGTGCACCACCCGCTGGGGGCGGC
GGAGTTTCTGCCCCAGGAGGCGTTTCTGCCCCAGGAGGCGTTTCTGCCCC
AGCAGGCGTTTCTGATCCGCGGGCGGTGGCGGCGGCGGCCCCGGCGTACG
CGCCCCCGCCGCCGCAAGTTGGTGGAGGAGGCGGAGGAGGGGCCAGCAGC
GGAGAAGGTGTGCGGCGTTTTGTGCTCAATGGGCCCGCTGTGCTAGATGC
GATGTTTTTTGGAAACGACTCACCCTACATGTCTTGCTCTCTTCGCAAAT
ATATGCCGTCGCTGATTCTGCGCGAAGAGCAACAATTCTGGCCATGTAAA
TAATGGTTGCATTTTTTTTTTTTAAGAATGGATGGGTTCAAGACAAAAGG
GCGTCGGGCGTGTATCTCCTCCCAGGTTTAAAACAGGGCAAAATCGATGT
ACGGTAGGTGCCGCGGTTCTTGGCCTCCACTGTTTTCAGTCCACCACAAC
ATCGCACGCCGTTCCGTCCCCTTACGCAGCCGGGGCTGGATTCGCAGCGG
CCTTTGCGAAAGTGGAGCAAGCGCTCGGGCTGTCGCCGCTCGACCACGCC
GAAGCCATGGGGCTGGACGTTTGGGAGGTCGGAGGCAGCAGCGGCACGAT
CGCCGGCTTCCAGGGGAAGAAGGTATAATAGCACACAACAGCAACGACAC
CGACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACGACAACATATCAAGCAGACTAAGCAACAACAAC
AACAACGACAAAATATCAAGCAGACTAAGCAACATCAACACACCAAGCAG
ACTTAGCAGCATCAACACCAGAAAAACCCGTGCAGCAGTGCCGATGATTT
CAGGTGCTCACGTGCCTTTCCACCGACTGTGTACGTTTTGAGTGGTTTCA
TTCAGGCCGTGCCGTGCCGTGCCGTGCCGTGCCTGCGGGTGCGTTCTCTC
GGCAATCACTCAAACGTGCACAAACTTAAACGGGCACACATGCGTAAACG
CGTGCCTAGAGCTGTGTGTTTCACTCAAACGTGCACAAACTTAAACGGGC
ACACATGCGTAAACGCGTGCCTAGAGCTGTGTGTTTCACTCAAACGTGCA
CAAACTTAAACGGGCACACATGCGTAAACGCGTGCCTAGAGCTGTGTGTT
TCACTCAAACGTGCACAAACTTCAACGGGCACACAACCGTAAACGCGGGC
CTAGAGCTGTGTCTTTCACACGGTGTAGGACTTTCAAGTAGTTTGCCCCT
GGCCAACCAAGGAGAGGTGATGTCATGGTCAAGGCAAGGACGGTCGCGAC
CAAACCCACCTTCAGAGGTTTCCTACAGAGATACTTCTACGTCCGGAACG
TCGGTGATAGGCCCAGCCCCCCGCACAACTCCGCTACGTGAGCCCCACGA
GTCAGCACAAAATGTCGGATTACATGTATTTTTCTCTGATGGCGCGAAAG
ATTCGAACGGATTTTGAGCAGGCAAACGCACGAGTGCCCACGCCCGTCCA
ACAGATCGTGAATGTGTTCCCCCCACGGAACCCCCCCTCCCCCGCGCCAG
GTCGACTGGGTGTCTCGCTGCACCTTCCAGGAAGCGGACGGCAGCAGCCG
CGAGTGCCTCCGGGCTTGGGTGAGTCCATTCAATCCGTTCCGCTCTTGGC
GCCGTTTGTTTGAGGCTGGGGCCAAAGAAGTCGCGCCGTAGAGATTGGAA
CAACGTTTGGTTTGCGCCGAAACAGGTAGTTTTGTAGCCGTCGTGGGATA
CGACGCACGCAAATATCTCTGCTGCGTGCATCGCACACCTCGTGCTTTTG
CCGCCTCATGTTTTGTGTGTTGGGGTGATCGTGTCGCCGCTGCTTTTGGT
TTTGCCGGCCGAATCCATGGTTTTTTTGTGTCCTTTCTGTGCGTGTCGTT
TTGGGTGTCTTCGCCCTGTTCTGGTTGGAGCAGGTGATGCCGATGTTCGA
CGTCCCCCACCTTTCCATCTCCATCGGGAGCGGGCCTAACGGTAAGCGTC
GGTGGCCTCGTCGTCGCTGTTGCATTCTTCTTTGTCTTGTTTCATTCGTG
CTGGAAGGATAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGATACTGTTGTTGTTGTTGTTGATGTTGTTGTTGTTGT
TGATGTTGTTGATGCTGTTGTTGTTGTTGTTGTTGTTGATGCTGTTGTTT
TTGTTGTTGTTGGATGATGTTGCTCTTGGCGCCGTTGTGGGTGTCGAAGC
CGGTGGCGTTGTTGCTGCTGTTGTTGGGCGATGACGTCTACCGACGTTGT
TTGCTCGTCGTCGCTTGTTGGCCTCGAGCTGCTTTTACACGGAGACACCG
GGCGCAGCAAACGCTTACTATCGTCCTCTCTCTTTGTGTTAGCCGAACCC
TTCGTACTGCTATTCAACGGCCAGACGGCCGCGACATCTTCTTTTTTTTT
TCTCCTACAGATACCCCGCATTTACCAATACGAGACAAAGGGTCCAGGAA
ATTTGGGAATAAATGCAGATGTAAATAGCGTGTCATTGTCTACCTTTGTG
CTGTGTCGACCCTGGGCATAGGTACAGTGATACTCCCGTGCTAAGTAGTG
GTAGCTGTCTCAACAAGACACTTTAGGTGGTCATCTTGTGTATACGGCTT
ACTATAATAGACTGCTGTGTACGATGGGAGGAATCATATTTTGAGATTTG
AGAGTGCATCCAGCACACGATACGGCCTACTTTAAGAGACTGCTGTGTAC
GTTGGGAGGAATCATATTTTGAGATTTGAGAGTGCATCCAGCACACGATA
CGGCCTACTATAATAGACTGCTGTGTACGATTGGGAGGAATCATATTTTG
AGATTTGAGAGTGCATCATCCAGCACACGATCAAACGAGTGCGGCACCCA
CATTCCTTCCTCCTTCTGCGCCGTGCCTCCGTTTTGTCCGCGGTCTGTCG
GATGGGGTATCCCGCTTCCCGTGGTTGACGCGGCGTGACATGACCTTGCG
TCCTACGTAGGTCTGACGGCGGAGATGGACCTGATTTCCAAAGATGACCT
CATGTAAGCCGTCGCTTGCTTCCTTCCTTCCCCCTGCTTTTGTTTTTTTG
GTTGTTGGCGCTCTTTGTTAGTAGGACCGTTCTTTTTTTCGCCGGTTTTC
CTGCGCGCTTTCTTCGTCAAAAGCGAAAGAAGGCCTTTTTTTGGCACACA
AGAGCTGCCTGTTGTTGTCATTGGCCGTGCGTGAATTGGCGGGGGGGGGG
AGGGGGGATTCCGTGAAACCTGCCTTCACATTCATGGAGCACTGGAAGTA
AAGTCGTTGTCTTCGCTCTTCGCTCTTCTCTCTTCTGGCCGTCTGAGCAG
CCGAACAAGAAGCACTGCCAACCCGAGCTACGCAAACCGACTGACCGGCC
CACGAAGCCTTCGCAAGTCGAACATGTTTTTAAATTGCGATGTGGAAACC
ATCGCAAGTTGAACATGTTTTCAAATTTCGATTTGGAAACCTTCGCAAGT
CGAACATGTTTTCAAATTTCGATGTGGTTTAGGTATAGGTATAAAACAAG
CAACCAGGTAGGTCATTTGGTGCCACGCCTTGCCTCGCGTTCTCGAGACT
CACTGTGCTGTTATACATAGAACAGACGAGCAGAGGCCCACAGCTGACTG
ATGCGCCCTTGAATTTTGGTGTGCGGCGCAACTGCTGTTTGGTAGGTACG
CCAAGGCCTACCGCGAGCAGTACTACGGAGGACGCACATCGGCCTGGTGG
TCAGCGCTGGTCCAGAACGTGCAGGCTGCCCCTACCAAGGTAAGAAATGC
GTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig11095:598..4551-

>mRNA_S-firma_F_contig11095.1450.1 ID=mRNA_S-firma_F_contig11095.1450.1|Name=mRNA_S-firma_F_contig11095.1450.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1458bp|location=Sequence derived from alignment at S-firma_F_contig11095:598..4551- (Sphaerotrichia firma ET2_F female)
CCCCCGGGTGCCTTTGTGTCCGACCCTCGTGCGCCGCCGGGTGCCAAAAT
TTCTGACCCTCGCGCGCCGCCAGGTGCCACAGTTTCCGATCCGCGGGCTC
CCCCGGGTGCCAGAGTTTCTGACCCGCGTGCACCACCCGCTGGGGGCGGC
GGAGTTTCTGCCCCAGGAGGCGTTTCTGCCCCAGGAGGCGTTTCTGCCCC
AGCAGGCGTTTCTGATCCGCGGGCGGTGGCGGCGGCGGCCCCGGCGTACG
CGCCCCCGCCGCCGCAAGTTGGTGGAGGAGGCGGAGGAGGGGCCAGCAGC
GGAGAAGCCCCCGGGTGCCTTTGTGTCCGACCCTCGTGCGCCGCCGGGTG
CCAAAATTTCTGACCCTCGCGCGCCGCCAGGTGCCACAGTTTCCGATCCG
CGGGCTCCCCCGGGTGCCAGAGTTTCTGACCCGCGTGCACCACCCGCTGG
GGGCGGCGGAGTTTCTGCCCCAGGAGGCGTTTCTGCCCCAGGAGGCGTTT
CTGCCCCAGCAGGCGTTTCTGATCCGCGGGCGGTGGCGGCGGCGGCCCCG
GCGTACGCGCCCCCGCCGCCGCAAGTTGGTGGAGGAGGCGGAGGAGGGGC
CAGCAGCGGAGAAGCCGGGGCTGGATTCGCAGCGGCCTTTGCGAAAGTGG
AGCAAGCGCTCGGGCTGTCGCCGCTCGACCACGCCGAAGCCATGGGGCTG
GACGTTTGGGAGGTCGGAGGCAGCAGCGGCACGATCGCCGGCTTCCAGGG
GAAGAAGCCGGGGCTGGATTCGCAGCGGCCTTTGCGAAAGTGGAGCAAGC
GCTCGGGCTGTCGCCGCTCGACCACGCCGAAGCCATGGGGCTGGACGTTT
GGGAGGTCGGAGGCAGCAGCGGCACGATCGCCGGCTTCCAGGGGAAGAAG
GTCGACTGGGTGTCTCGCTGCACCTTCCAGGAAGCGGACGGCAGCAGCCG
CGAGTGCCTCCGGGCTTGGGTCGACTGGGTGTCTCGCTGCACCTTCCAGG
AAGCGGACGGCAGCAGCCGCGAGTGCCTCCGGGCTTGGGTGATGCCGATG
TTCGACGTCCCCCACCTTTCCATCTCCATCGGGAGCGGGCCTAACGGTGA
TGCCGATGTTCGACGTCCCCCACCTTTCCATCTCCATCGGGAGCGGGCCT
AACGGTCTGACGGCGGAGATGGACCTGATTTCCAAAGATGACCTCATGTC
TGACGGCGGAGATGGACCTGATTTCCAAAGATGACCTCATGTACGCCAAG
GCCTACCGCGAGCAGTACTACGGAGGACGCACATCGGCCTGGTGGTCAGC
GCTGGTCCAGAACGTGCAGGCTGCCCCTACCAAGGTAAGAAATGCGTAAG
TACGCCAAGGCCTACCGCGAGCAGTACTACGGAGGACGCACATCGGCCTG
GTGGTCAGCGCTGGTCCAGAACGTGCAGGCTGCCCCTACCAAGGTAAGAA
ATGCGTAA
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