mRNA_S-firma_F_contig11024.1375.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig11024.1375.1 vs. uniprot
Match: A0A6H5LMQ8_9PHAE (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LMQ8_9PHAE) HSP 1 Score: 176 bits (446), Expect = 2.880e-48 Identity = 94/137 (68.61%), Postives = 100/137 (72.99%), Query Frame = 3
Query: 3 DIVQFVPMRDFAGKSNHLLAKEVLAEIPAQVIEYMKNNKIVPGNPHRPRMPGRQGSIGSMALQESFMHNGPAPM---------------GTGPSFRRAPQHQPSHQQGSFMHPQPGAPTAPYAPPQRNGGDPPPTYS 368
DIVQFVPMRDFAGKS+H LAKEVLAEIPAQVIEYMKNN I PGNPHRP + G QGS+GSMAL+ESFMHNG AP+ PSFR PQ QQGSFMHPQ GAPTAPY PPQ+ GGD PP YS
Sbjct: 520 DIVQFVPMRDFAGKSSHALAKEVLAEIPAQVIEYMKNNHIPPGNPHRPSLAGCQGSMGSMALKESFMHNGAAPVPGMPQGGSFTNHQAPSAAPSFRGQPQQYNQSQQGSFMHPQAGAPTAPYEPPQQTGGDAPPVYS 656
BLAST of mRNA_S-firma_F_contig11024.1375.1 vs. uniprot
Match: A0A6H5L3T5_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T5_9PHAE) HSP 1 Score: 135 bits (339), Expect = 3.020e-33 Identity = 67/84 (79.76%), Postives = 73/84 (86.90%), Query Frame = 3
Query: 3 DIVQFVPMRDFAGKSNHLLAKEVLAEIPAQVIEYMKNNKIVPGNPHRPRMPGRQGSIGSMALQESFMHNGPAPMGTGPSFRRAP 254
DIVQFVPMRDFAGKS+H LAKEVLAEIPAQVIEYM+NN+I PGNPHRPR G QGSIGSMAL+ SFMHNG AP+ GP+ RAP
Sbjct: 525 DIVQFVPMRDFAGKSSHALAKEVLAEIPAQVIEYMENNQIPPGNPHRPRTGGGQGSIGSMALKGSFMHNGAAPVAGGPASHRAP 608
BLAST of mRNA_S-firma_F_contig11024.1375.1 vs. uniprot
Match: D7FXN1_ECTSI (Copine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN1_ECTSI) HSP 1 Score: 123 bits (308), Expect = 4.000e-29 Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 3
Query: 3 DIVQFVPMRDFAGKSNHLLAKEVLAEIPAQVIEYMKNNKIVPGNPHRPRMPGRQGSIGSMALQESFMHNGPAPM 224
DIVQFVPMRDFAGKS+H LAKEVLAEIPAQVIEYM+NN+I PGNPHRPR G QGSIGSMAL+ SFM NG AP+
Sbjct: 471 DIVQFVPMRDFAGKSSHALAKEVLAEIPAQVIEYMENNQIPPGNPHRPRTNGGQGSIGSMALKGSFMQNGAAPV 544
BLAST of mRNA_S-firma_F_contig11024.1375.1 vs. uniprot
Match: D7G7Q5_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q5_ECTSI) HSP 1 Score: 62.8 bits (151), Expect = 4.600e-8 Identity = 37/74 (50.00%), Postives = 42/74 (56.76%), Query Frame = 3
Query: 3 DIVQFVPMRDFAGKSNHLLAKEVLAEIPAQVIEYMKNNKIVPGNPHR------PRMPGRQGSIGSMALQESFMH 206
DIVQFVPMR+F+ H LA+EVLAEIP QV+EYM NN+I P PR G G G SF H
Sbjct: 519 DIVQFVPMREFSNLGFHALAREVLAEIPQQVVEYMANNRINACQPRARPPVPPPRQAGYAGGXGG-----SFSH 587
BLAST of mRNA_S-firma_F_contig11024.1375.1 vs. uniprot
Match: A0A8B8B4S0_CRAVI (copine-8-like isoform X1 n=7 Tax=Crassostrea TaxID=6564 RepID=A0A8B8B4S0_CRAVI) HSP 1 Score: 58.9 bits (141), Expect = 9.510e-7 Identity = 44/115 (38.26%), Postives = 54/115 (46.96%), Query Frame = 3
Query: 3 DIVQFVPMRDFAGK--------SNHLLAKEVLAEIPAQVIEYMKNNKIVPGNPHRP-RMPGRQGSIGSMALQESFMHNGPAPMGTGPSFRRAPQHQPSHQQGSFMHPQPGAPTAP 320
DIVQFVP RDF G S LAKEVLAEIP QV++YM+ NKI P P +PG+ + S + GP P S++ P PG P+AP
Sbjct: 487 DIVQFVPFRDFMGGKYGGNTQISQAALAKEVLAEIPDQVVQYMQANKIAPKPPRTDVLLPGQNPTPQSQPPXXXAQNQGPMP--------------------SWVKPPPGGPSAP 581
BLAST of mRNA_S-firma_F_contig11024.1375.1 vs. uniprot
Match: A0A1I7ZV08_9BILA (Uncharacterized protein n=2 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7ZV08_9BILA) HSP 1 Score: 57.4 bits (137), Expect = 3.200e-6 Identity = 50/118 (42.37%), Postives = 57/118 (48.31%), Query Frame = 3
Query: 3 DIVQFVPMRDFAGKSNH--------LLAKEVLAEIPAQVIEYMKNNKIVPGNPHRPRMPGRQGSIGSMALQESFMHNGPAPMGTGPSFRRAPQHQPSHQQGSFMHPQPGAPTAPYAPP 332
DIVQFV +RDF K + LLAKEVLAE+PAQV YM N IVP R S E+ M+ P T P + A P+ FM PQP PTAP APP
Sbjct: 510 DIVQFVALRDFLSKYANANEISQLALLAKEVLAEVPAQVASYMNQNGIVPKPVDR-----------SQIQPEASMYPPVNPQPTVPMSQPAYPANPAE----FM-PQPQLPTAPSAPP 611
BLAST of mRNA_S-firma_F_contig11024.1375.1 vs. uniprot
Match: T1G811_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G811_HELRO) HSP 1 Score: 57.0 bits (136), Expect = 4.200e-6 Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 3
Query: 3 DIVQFVPMRDFAGKSNHLLAKEVLAEIPAQVIEYMKNNKIVPGNP 137
DIVQFVP R+F S LAK+VLAE+P QV+ Y + NKI PG P
Sbjct: 490 DIVQFVPFRNFERASQEALAKQVLAELPDQVVSYYQANKIEPGKP 534
BLAST of mRNA_S-firma_F_contig11024.1375.1 vs. uniprot
Match: A0A6F9DAH3_9ASCI (Copine-3 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DAH3_9ASCI) HSP 1 Score: 56.2 bits (134), Expect = 7.720e-6 Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 3
Query: 3 DIVQFVPMRDFAGKSNHLLAKEVLAEIPAQVIEYMKNNKIVP 128
DIVQFVP RDF H+LAK VLAE+P QVI Y ++ KI P
Sbjct: 492 DIVQFVPFRDFRNAPRHILAKNVLAELPDQVISYYRSRKIQP 533
BLAST of mRNA_S-firma_F_contig11024.1375.1 vs. uniprot
Match: A0A7S2Y008_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y008_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 1.510e-5 Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 3
Query: 3 DIVQFVPMRDFAGKSNHLLAKEVLAEIPAQVIEYMKNNKIVPG 131
DIVQFVP +F + LAKEVL E+P QV+ YM+ N I PG
Sbjct: 64 DIVQFVPWNEFKDRGPQALAKEVLEEVPRQVMHYMERNGITPG 106
BLAST of mRNA_S-firma_F_contig11024.1375.1 vs. uniprot
Match: UPI000C6D13BA (copine-5-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D13BA) HSP 1 Score: 52.4 bits (124), Expect = 1.510e-5 Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 3
Query: 3 DIVQFVPMRDFAG-----KSNHLLAKEVLAEIPAQVIEYMKNNKIVP 128
DIVQFVP R+F KS LLAKEVLAE+P Q +EYMK + I P
Sbjct: 51 DIVQFVPFREFVSGENWSKSQVLLAKEVLAELPDQFLEYMKKHNIKP 97 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11024.1375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig11024.1375.1 >prot_S-firma_F_contig11024.1375.1 ID=prot_S-firma_F_contig11024.1375.1|Name=mRNA_S-firma_F_contig11024.1375.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=118bp MRDFAGKSNHLLAKEVLAEIPAQVIEYMKNNKIVPGNPHRPRMPGRQGSIback to top mRNA from alignment at S-firma_F_contig11024:2196..4892- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig11024.1375.1 ID=mRNA_S-firma_F_contig11024.1375.1|Name=mRNA_S-firma_F_contig11024.1375.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2697bp|location=Sequence derived from alignment at S-firma_F_contig11024:2196..4892- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig11024:2196..4892- >mRNA_S-firma_F_contig11024.1375.1 ID=mRNA_S-firma_F_contig11024.1375.1|Name=mRNA_S-firma_F_contig11024.1375.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=708bp|location=Sequence derived from alignment at S-firma_F_contig11024:2196..4892- (Sphaerotrichia firma ET2_F female)back to top |