mRNA_S-firma_F_contig11015.1362.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11015.1362.1
Unique NamemRNA_S-firma_F_contig11015.1362.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11015.1362.1 vs. uniprot
Match: A0A6H5KVF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF9_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 1.390e-74
Identity = 149/192 (77.60%), Postives = 163/192 (84.90%), Query Frame = 1 
Query:    1 SSWRGAVHGFDNGGGGXXXXXXXXXXXXXXXXX------GSAANSLQGGARGGNQLHTNAVLEFEERLEAIKTGLAQGVDCIVWEDKTRQVEATMSVVEGDAGSSKLVFAAKGSYLIWRAPVRPMQMNSSLKVGLGHGDLQGLANQDDSTFLNMRSGGTSTEEARIVIVQVADKEMRNDLVSSVRRLLTQVR 558
            ++WRGAVHGFDNGGG    XXXXXXXXXXXXXX      GS +NS+ G +R  NQLHTNAVLEFEERLEAIK GL+QGVDC VWEDKTRQVEA M V EG+AGSSKL FAAKGSYLIWRAPVRPM M+S LKV LGHGDLQGL +QDDST+L MR GG+S +EAR+VIVQVADKEMRNDLVSSVRRLLTQ +
Sbjct:  741 TAWRGAVHGFDNGGGSGAGXXXXXXXXXXXXXXSHASSPGSTSNSVLGSSRS-NQLHTNAVLEFEERLEAIKVGLSQGVDCWVWEDKTRQVEAIMKVEEGEAGSSKLTFAAKGSYLIWRAPVRPMHMDSRLKVSLGHGDLQGLGSQDDSTYLTMRCGGSSADEARVVIVQVADKEMRNDLVSSVRRLLTQAK 931
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BLAST of mRNA_S-firma_F_contig11015.1362.1 vs. uniprot
Match: D8LTS1_ECTSI (Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 4.780e-73
Identity = 152/200 (76.00%), Postives = 166/200 (83.00%), Query Frame = 1 
Query:    1 SSWRGAVHGFDNGGGGXXXXXXXXXXXXXXXXX--------------GSAANSLQGGARGGNQLHTNAVLEFEERLEAIKTGLAQGVDCIVWEDKTRQVEATMSVVEGDAGSSKLVFAAKGSYLIWRAPVRPMQMNSSLKVGLGHGDLQGLANQDDSTFLNMRSGGTSTEEARIVIVQVADKEMRNDLVSSVRRLLTQVR 558
            ++WRGAVHGFDNGGG XXXXXXXXXXXXXXXXX              GS +NS+ G +R  NQLHTNAVLEFEERLEAIK GL+QGVDC VWEDKTRQVEA M V EG+AGSSKL FAAKGSYLIWRAPVRPMQM+S LKV LGHGDL GL +QDDST+L MR GG+S +EAR+VIVQVADKEMRNDLVSSVRRLLTQ +
Sbjct: 1459 TAWRGAVHGFDNGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSTSNSVPGSSRS-NQLHTNAVLEFEERLEAIKVGLSQGVDCWVWEDKTRQVEAIMKVEEGEAGSSKLTFAAKGSYLIWRAPVRPMQMDSRLKVSLGHGDLHGLGSQDDSTYLTMRCGGSSADEARMVIVQVADKEMRNDLVSSVRRLLTQAK 1657
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BLAST of mRNA_S-firma_F_contig11015.1362.1 vs. uniprot
Match: A0A835YXT9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.840e-15
Identity = 50/141 (35.46%), Postives = 85/141 (60.28%), Query Frame = 1 
Query:  169 EFEERLEAIKTGLAQGVDCIVWEDKTRQVEATMSVVE-----GDAGSS------KLVFAAKGSYLIWRAPVRPMQMNSSLKVGLGHGDLQGLANQDDSTFLNM--RSGGTSTEEARIVIVQVADKEMRNDLVSSVRRLLTQ 552
            EFE+RL AIK  LA GVD  VW+ + ++V+A + + E     G+A +       +L F  +G+YLIWR  ++P+ +++ L V  G  D   +  Q DS  L++  +  G S E  R+V+++++D ++R +L S +R+LLT+
Sbjct: 1964 EFEDRLMAIKRFLAAGVDVTVWDGRNKKVDAVLKLEEKSPPGGEAHADPECPYPRLEFHLRGAYLIWRNNIKPLAIDTFLMVQQGAKDTPEVGEQYDSLCLSLLCQPQGLS-EPDRVVVLRLSDDDLRRELYSGIRKLLTE 2103
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11015.1362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KVF9_9PHAE1.390e-7477.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTS1_ECTSI4.780e-7376.00Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A835YXT9_9STRA4.840e-1535.46P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11015contigS-firma_F_contig11015:1594..3712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LTS1
PFAMsFYVE,IQ,Myosin_head,WD40
Max annot lvl2759|Eukaryota
KEGG koko:K10357
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
Evalue7.84e-74
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size562
Cds size561
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11015.1362.1prot_S-firma_F_contig11015.1362.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11015 1594..3712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.7130919-CDS-S-firma_F_contig11015:1593..17181622815649.7130919-CDS-S-firma_F_contig11015:1593..1718Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11015 1594..1718 +
1696949478.4860146-CDS-S-firma_F_contig11015:1593..17181696949478.4860146-CDS-S-firma_F_contig11015:1593..1718Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11015 1594..1718 +
1622815649.72398-CDS-S-firma_F_contig11015:2080..23331622815649.72398-CDS-S-firma_F_contig11015:2080..2333Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11015 2081..2333 +
1696949478.4969065-CDS-S-firma_F_contig11015:2080..23331696949478.4969065-CDS-S-firma_F_contig11015:2080..2333Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11015 2081..2333 +
1622815649.733321-CDS-S-firma_F_contig11015:3013..31271622815649.733321-CDS-S-firma_F_contig11015:3013..3127Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11015 3014..3127 +
1696949478.5056775-CDS-S-firma_F_contig11015:3013..31271696949478.5056775-CDS-S-firma_F_contig11015:3013..3127Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11015 3014..3127 +
1622815649.7435892-CDS-S-firma_F_contig11015:3643..37121622815649.7435892-CDS-S-firma_F_contig11015:3643..3712Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11015 3644..3712 +
1696949478.5146492-CDS-S-firma_F_contig11015:3643..37121696949478.5146492-CDS-S-firma_F_contig11015:3643..3712Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11015 3644..3712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11015.1362.1

>prot_S-firma_F_contig11015.1362.1 ID=prot_S-firma_F_contig11015.1362.1|Name=mRNA_S-firma_F_contig11015.1362.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=187bp
SSWRGAVHGFDNGGGGGANGPSHSNAGSNVGSPGSAANSLQGGARGGNQL
HTNAVLEFEERLEAIKTGLAQGVDCIVWEDKTRQVEATMSVVEGDAGSSK
LVFAAKGSYLIWRAPVRPMQMNSSLKVGLGHGDLQGLANQDDSTFLNMRS
GGTSTEEARIVIVQVADKEMRNDLVSSVRRLLTQVR*
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mRNA from alignment at S-firma_F_contig11015:1594..3712+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11015.1362.1 ID=mRNA_S-firma_F_contig11015.1362.1|Name=mRNA_S-firma_F_contig11015.1362.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2119bp|location=Sequence derived from alignment at S-firma_F_contig11015:1594..3712+ (Sphaerotrichia firma ET2_F female)
TCGTCGTGGAGGGGCGCCGTGCACGGGTTCGACAACGGCGGCGGCGGCGG
CGCGAACGGCCCGAGCCACAGCAACGCCGGCAGCAATGTGGGCTCGCCCG
GGAGCGCCGCCAACAGCCTGCAGGGGTGAGGGGGGAATGAATGATTCACG
GAGCCATTTCGGAAGGTGTTGGGAGGGGGGGGCGGGGGGAGAGAGGGAGG
GAGAGAGAGACAGAGACAGAGACAGAGGGAGGGAGAGTTCGTGGTCGTTG
TTGGTCTGCGGCTTTACGGTGGGACGGGCGAGAGGTGGCTCTTGCTCTCT
TTCGTGTCCTTCACCTCGGCTAAGTATTGCCACTTCCCTCCGGTTGTTTT
TTTTTACCTCTTACGGAAGACACAAAAACGCATTTCTTGTGCCCTCCCCC
TCCCCCTGCCTCCGGCACCGCCGTGTCTGCCGTCTCTTTGGACGTCATGC
CTCTCTTCGCGCTTCGTGTCTTCGTGTCTTCTTCCAGGGGCGCCAGGGGG
GGCAACCAGCTGCACACGAACGCCGTGCTTGAGTTCGAGGAGCGCCTCGA
GGCCATCAAGACCGGCCTCGCGCAGGGGGTGGACTGCATCGTCTGGGAGG
ACAAGACGCGCCAGGTGGAGGCGACCATGTCGGTCGTGGAGGGCGACGCC
GGCAGCAGCAAGCTCGTGTTCGCCGCCAAGGGGTCGTACCTCATCTGGCG
GGCCCCCGTCCGCCCCATGCAGATGAACTCGTCGCTCAAGGTGAAGGCTG
CTGCTGCTGCTGCTGCTGCTGCGTCGTGAGCGTTGGCGTTGGTCGAGAAC
GGGGAGTTGCTGATTGCGGATGTTTTTTTTTCTGTGTGGGTGGGTGGGTG
GGTAGGATACATGCGTGACTCTGTCGCGTCGACCCGACCGAACGCTTGAC
GGGGATGTTGTTGGGTGCAGGTGGATGAAAGATAAAAGTGACTCGGTCAT
GCCAATCGCTACCTAACCCTAACCCCAACCCTGACGTATGCCTGACCCTA
GCCCCATCTTGACTTGTGCCTAACCCACCCTGACGTAGTAGTACACCTTG
CCCTGACCGTAGCCGTAGCCGAAACCGTAGCCGTAACCGTACCCGTAGCC
GTAGCCGTAGCCGTAACCGTAGCCGTAACCGTAACCGTAGCCGTACCGCA
GCCTTAGCTGTAACCGTAACCGTAGCCGTAACCGAAACCGTAACCGTAGC
CGTATCCGTAACCGTAACCGTAGCTATAACCGTAACCGTAACCGTAGCCG
TAACCGTAGCCGTAACCGTAACCGTAACCGTAGCCGTAACCGAAACCGTA
GCCGTGCCGTAGCCGTAGCCGTAGCCGTAGCCGTAACCGTAGCCGTTAAC
CGTAGCCGTAGCCGTCGCCATAACCGTAACCGTAACCGTAACCGTAATTG
TTGCCGTTACCCGATCGTAGGTGGGACTCGGGCACGGCGACCTTCAGGGC
CTGGCCAACCAGGACGACAGCACTTTCCTCAACATGCGCAGCGGCGGCAC
GTCCACGGAGGAGGCCCGGATCGTCATCGTGCAGGTGTGTGTCTGTGTGT
GTGTGTCGTGTGTGTGTGTTTTGTGTGTGTGTTTTGTGTGTGTGTGTCGT
GTCTGTGTCGTGTGTGTGTGTCGTGTTTGTGTGTCGTGTGTGTGCGTGCG
TCGTGTTTGCCGTTTGTTTGTGTTTGCCGTTTGTGCTTTAGTGCTCTGGT
CTCCTGTGATTGAGCTCTTGCTGGTGTTATCGGTGTTGGTGCTGCTGGTA
GACTTTGAAGTTGGTTCGCTCTTGTGGGTTGTTTTGGTTGAGAGGGTTGG
TGCTGCACTTGTTTAAATAAAACGTCAGCCGTCTTCTACGTCCAGCCTGC
GAACAATAAGTCGTGCGCAGCAGTAGTTTGTGCCTCTTTCATGTTTTGAG
CCTCCTCTTTTCGATCTTTTGATCCCCTGTTGTCCTGTTCGTCTGCTCTA
TTTATGTTTTGAGCCTCTTTTTTTTGATCTTTTGATCCCCTGTTGTCCTG
TTCGTCTGCTCTATTTATGTATGTGCACGCAAATGTTATCTTAACCCCAG
GTGGCGGACAAGGAGATGAGGAACGACCTCGTGTCGAGCGTGAGGAGACT
GCTAACCCAGGTGCGCTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig11015:1594..3712+

>mRNA_S-firma_F_contig11015.1362.1 ID=mRNA_S-firma_F_contig11015.1362.1|Name=mRNA_S-firma_F_contig11015.1362.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1122bp|location=Sequence derived from alignment at S-firma_F_contig11015:1594..3712+ (Sphaerotrichia firma ET2_F female)
TCGTCGTGGAGGGGCGCCGTGCACGGGTTCGACAACGGCGGCGGCGGCGG
CGCGAACGGCCCGAGCCACAGCAACGCCGGCAGCAATGTGGGCTCGCCCG
GGAGCGCCGCCAACAGCCTGCAGGGTCGTCGTGGAGGGGCGCCGTGCACG
GGTTCGACAACGGCGGCGGCGGCGGCGCGAACGGCCCGAGCCACAGCAAC
GCCGGCAGCAATGTGGGCTCGCCCGGGAGCGCCGCCAACAGCCTGCAGGG
GGGCGCCAGGGGGGGCAACCAGCTGCACACGAACGCCGTGCTTGAGTTCG
AGGAGCGCCTCGAGGCCATCAAGACCGGCCTCGCGCAGGGGGTGGACTGC
ATCGTCTGGGAGGACAAGACGCGCCAGGTGGAGGCGACCATGTCGGTCGT
GGAGGGCGACGCCGGCAGCAGCAAGCTCGTGTTCGCCGCCAAGGGGTCGT
ACCTCATCTGGCGGGCCCCCGTCCGCCCCATGCAGATGAACTCGTCGCTC
AAGGGGCGCCAGGGGGGGCAACCAGCTGCACACGAACGCCGTGCTTGAGT
TCGAGGAGCGCCTCGAGGCCATCAAGACCGGCCTCGCGCAGGGGGTGGAC
TGCATCGTCTGGGAGGACAAGACGCGCCAGGTGGAGGCGACCATGTCGGT
CGTGGAGGGCGACGCCGGCAGCAGCAAGCTCGTGTTCGCCGCCAAGGGGT
CGTACCTCATCTGGCGGGCCCCCGTCCGCCCCATGCAGATGAACTCGTCG
CTCAAGGTGGGACTCGGGCACGGCGACCTTCAGGGCCTGGCCAACCAGGA
CGACAGCACTTTCCTCAACATGCGCAGCGGCGGCACGTCCACGGAGGAGG
CCCGGATCGTCATCGTGCAGGTGGGACTCGGGCACGGCGACCTTCAGGGC
CTGGCCAACCAGGACGACAGCACTTTCCTCAACATGCGCAGCGGCGGCAC
GTCCACGGAGGAGGCCCGGATCGTCATCGTGCAGGTGGCGGACAAGGAGA
TGAGGAACGACCTCGTGTCGAGCGTGAGGAGACTGCTAACCCAGGTGCGC
TGAGTGGCGGACAAGGAGATGAGGAACGACCTCGTGTCGAGCGTGAGGAG
ACTGCTAACCCAGGTGCGCTGA
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