mRNA_S-firma_F_contig11007.1348.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11007.1348.1
Unique NamemRNA_S-firma_F_contig11007.1348.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11007.1348.1 vs. uniprot
Match: A0A7S0PF82_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PF82_CAFRO)

HSP 1 Score: 138 bits (347), Expect = 1.310e-38
Identity = 81/152 (53.29%), Postives = 96/152 (63.16%), Query Frame = 1 
Query:    1 TRSAQVLDGSWQFGGPTEVPDATDIDPTAV------HTPDTAT----VPSAFDVALPGVEGPRGTAFYRTTFDLPAGTGGLVHFAACSFYCSVFVSEAADGSAGYHHVGDHRASGYSPFWLTIPPSSLSSTREMLVVVNNEFNSTTAPTHTG 426
            TR+ QVLDG+W F     VP    +DPTA+         D +T    VP + DV  PGVEGPRGT  YRTTF    G G L+ F ACSFYC VFV    DG+     +GDHRA GY+PFW+  P +S ++ RE+LVVVNNEFNSTTAP HTG
Sbjct:   43 TRTLQVLDGTWDF-----VPAIAGVDPTAIPYEAAKELVDKSTSSMGVPGSCDVTAPGVEGPRGTFVYRTTFAGSPGVGSLLQFMACSFYCRVFV----DGA----ELGDHRAGGYAPFWMAAPAAS-ATRREVLVVVNNEFNSTTAPVHTG 180
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BLAST of mRNA_S-firma_F_contig11007.1348.1 vs. uniprot
Match: F2UD55_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UD55_SALR5)

HSP 1 Score: 144 bits (362), Expect = 6.940e-38
Identity = 77/142 (54.23%), Postives = 97/142 (68.31%), Query Frame = 1 
Query:    1 TRSAQVLDGSWQFGGPTEVPDATDIDPTAVHTPDTATVPSAFDVALPGVEGPRGTAFYRTTFDLPAGTGGLVHFAACSFYCSVFVSEAADGSAGYHHVGDHRASGYSPFWLTIPPSSLSSTREMLVVVNNEFNSTTAPTHTG 426
            TR+  +L+G W FG    VPDA + D       ++ +VP+AFDVA PGV GPRGTAFYR  FDL     GL++FAACSFYC VFV    DG A    +GDHRA GY  FW+ +P S+ + TRE++V+V+N FN+TTAPTHTG
Sbjct:   37 TRTLAILNGEWDFGYLDNVPDAINFDIKNAVFNESMSVPAAFDVAQPGVMGPRGTAFYRRQFDLSPNHKGLLYFAACSFYCRVFV----DGQA----LGDHRAGGYQAFWMHVPAST-NHTRELVVLVDNRFNATTAPTHTG 169
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BLAST of mRNA_S-firma_F_contig11007.1348.1 vs. uniprot
Match: A0A813ATS4_9DINO (4a-hydroxytetrahydrobiopterin dehydratase n=5 Tax=Sar TaxID=2698737 RepID=A0A813ATS4_9DINO)

HSP 1 Score: 120 bits (300), Expect = 1.010e-28
Identity = 72/140 (51.43%), Postives = 86/140 (61.43%), Query Frame = 1 
Query:   25 GSWQFGGPTEVPDATDIDPTAV------HTPDTAT----VPSAFDVALPGVEGPRGTAFYRTTFDLPAGTGGLVHFAACSFYCSVFVSEAADGSAGYHHVGDHRASGYSPFWLTIPPSSLSSTREMLVVVNNEFNSTTAP 414
            G+W F     VP    +DPTA+         D +T    VP + DV  PGVEGPRGT  YRTTF    G G L+ F ACSFYC VFV    DG+     +GDHRA GY+PFW+  P +S ++ RE+LVVVNNEFNSTTAP
Sbjct:   85 GTWDF-----VPAIAGVDPTAIPYEAAKELVDKSTSSMGVPGSCDVTAPGVEGPRGTFVYRTTFAGSPGVGSLLQFMACSFYCRVFV----DGA----ELGDHRAGGYAPFWMAAPAAS-ATRREVLVVVNNEFNSTTAP 210
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11007.1348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S0PF82_CAFRO1.310e-3853.29Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
F2UD55_SALR56.940e-3854.23Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A813ATS4_9DINO1.010e-2851.434a-hydroxytetrahydrobiopterin dehydratase n=5 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11007contigS-firma_F_contig11007:89..523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog946362.XP_004992807.1
PFAMsGlyco_hydro_2,Glyco_hydro_2_C,Glyco_hydro_2_N
Max annot lvl33154|Opisthokonta
KEGG rclassRC00055,RC00171,RC00529,RC00530,RC00714,RC01251
KEGG koko:K01195
KEGG ReactionR01478,R04979,R07818,R08127,R08260,R10830
KEGG Pathwayko00040,ko00531,ko00860,ko00944,ko00983,ko01100,ko01110,ko04142,map00040,map00531,map00860,map00944,map00983,map01100,map01110,map04142
KEGG ModuleM00014,M00076,M00077,M00078,M00129
Evalue1.14e-38
EggNOG OGsCOG3250@1|root,KOG2024@2759|Eukaryota,38HKN@33154|Opisthokonta
EC3.2.1.31
DescriptionBelongs to the glycosyl hydrolase 2 family
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size435
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.4627583-CDS-S-firma_F_contig11007:88..5231622815648.4627583-CDS-S-firma_F_contig11007:88..523Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11007 89..523 -
1696949477.7455623-CDS-S-firma_F_contig11007:88..5231696949477.7455623-CDS-S-firma_F_contig11007:88..523Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11007 89..523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11007.1348.1prot_S-firma_F_contig11007.1348.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11007 89..523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11007.1348.1

>prot_S-firma_F_contig11007.1348.1 ID=prot_S-firma_F_contig11007.1348.1|Name=mRNA_S-firma_F_contig11007.1348.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=145bp
TRSAQVLDGSWQFGGPTEVPDATDIDPTAVHTPDTATVPSAFDVALPGVE
GPRGTAFYRTTFDLPAGTGGLVHFAACSFYCSVFVSEAADGSAGYHHVGD
HRASGYSPFWLTIPPSSLSSTREMLVVVNNEFNSTTAPTHTGCA*
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mRNA from alignment at S-firma_F_contig11007:89..523-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11007.1348.1 ID=mRNA_S-firma_F_contig11007.1348.1|Name=mRNA_S-firma_F_contig11007.1348.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=435bp|location=Sequence derived from alignment at S-firma_F_contig11007:89..523- (Sphaerotrichia firma ET2_F female)
ACACGCTCTGCGCAGGTTCTTGACGGAAGCTGGCAGTTTGGGGGCCCCAC
TGAGGTCCCGGACGCGACAGACATTGACCCCACGGCTGTGCACACGCCGG
ACACGGCAACGGTCCCGTCCGCCTTTGACGTCGCGCTGCCCGGCGTGGAA
GGGCCCCGGGGAACGGCCTTTTACCGCACTACGTTTGACCTGCCGGCTGG
CACTGGCGGGCTGGTCCACTTTGCTGCTTGCTCATTTTATTGCAGCGTGT
TCGTGTCCGAGGCGGCCGATGGCTCTGCTGGGTACCACCACGTTGGTGAC
CACCGGGCGTCGGGCTACTCCCCGTTCTGGCTGACCATTCCGCCATCGTC
GCTGTCCTCAACGCGCGAAATGCTGGTGGTGGTGAACAACGAGTTCAACA
GCACCACCGCACCCACACACACAGGGTGCGCGTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig11007:89..523-

>mRNA_S-firma_F_contig11007.1348.1 ID=mRNA_S-firma_F_contig11007.1348.1|Name=mRNA_S-firma_F_contig11007.1348.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=870bp|location=Sequence derived from alignment at S-firma_F_contig11007:89..523- (Sphaerotrichia firma ET2_F female)
ACACGCTCTGCGCAGGTTCTTGACGGAAGCTGGCAGTTTGGGGGCCCCAC
TGAGGTCCCGGACGCGACAGACATTGACCCCACGGCTGTGCACACGCCGG
ACACGGCAACGGTCCCGTCCGCCTTTGACGTCGCGCTGCCCGGCGTGGAA
GGGCCCCGGGGAACGGCCTTTTACCGCACTACGTTTGACCTGCCGGCTGG
CACTGGCGGGCTGGTCCACTTTGCTGCTTGCTCATTTTATTGCAGCGTGT
TCGTGTCCGAGGCGGCCGATGGCTCTGCTGGGTACCACCACGTTGGTGAC
CACCGGGCGTCGGGCTACTCCCCGTTCTGGCTGACCATTCCGCCATCGTC
GCTGTCCTCAACGCGCGAAATGCTGGTGGTGGTGAACAACGAGTTCAACA
GCACCACCGCACCCACACACACAGGGTGCGCGTGAACACGCTCTGCGCAG
GTTCTTGACGGAAGCTGGCAGTTTGGGGGCCCCACTGAGGTCCCGGACGC
GACAGACATTGACCCCACGGCTGTGCACACGCCGGACACGGCAACGGTCC
CGTCCGCCTTTGACGTCGCGCTGCCCGGCGTGGAAGGGCCCCGGGGAACG
GCCTTTTACCGCACTACGTTTGACCTGCCGGCTGGCACTGGCGGGCTGGT
CCACTTTGCTGCTTGCTCATTTTATTGCAGCGTGTTCGTGTCCGAGGCGG
CCGATGGCTCTGCTGGGTACCACCACGTTGGTGACCACCGGGCGTCGGGC
TACTCCCCGTTCTGGCTGACCATTCCGCCATCGTCGCTGTCCTCAACGCG
CGAAATGCTGGTGGTGGTGAACAACGAGTTCAACAGCACCACCGCACCCA
CACACACAGGGTGCGCGTGA
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