mRNA_S-firma_F_contig1100.1339.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1100.1339.1
Unique NamemRNA_S-firma_F_contig1100.1339.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1100.1339.1 vs. uniprot
Match: Q8QN61_ESV1K (EsV-1-229 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN61_ESV1K)

HSP 1 Score: 142 bits (359), Expect = 6.510e-39
Identity = 86/203 (42.36%), Postives = 121/203 (59.61%), Query Frame = 1 
Query:    1 EGLSPVQALGKVSALKMLVTERVGDPEEDETMEQARPHLSEMNSKGFLTINSQMGRKEVLKDPKDGSYY----PMWQRAYVDGYLPRHLARKFHEHMEIVPGVVVYTGAPVNNSEVYVDLDVPVTI----DND-RVYSRSPMAPDSNIKHLEVMVLPEVASIMRHKRCKDLVIMDAIHARIVDTEWGRPWWLFDKIIQVLDKM 582
            E LSPVQALGK+SA+ ML T RVGDP ED +M QARP+LSE+N +G +T +SQMG K+ L    DG         WQR+Y+ G L + L  KF + M +V GV  +      +    +  D+ VT+    DN+   ++  PMA       L   VLPEV  ++++  C  +V  DA+  +IVD  WGRP+WLF+K+ +VLD++
Sbjct:   42 EELSPVQALGKLSAVAMLTTVRVGDPGEDASMAQARPYLSEVNKRGLVTTDSQMGAKKHLSHHFDGHVLNPPVTQWQRSYISGILAKGLGGKFAQKMRLVDGVDFFLDWHGESPPYALTHDINVTMYRQGDNEPNFFTNVPMATHPLAYSLSG-VLPEVEHVLQNDTCVRIVEEDALLVQIVDLVWGRPFWLFEKVKEVLDEV 243
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1100.1339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QN61_ESV1K6.510e-3942.36EsV-1-229 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1100contigS-firma_F_contig1100:18036..18617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.77149-CDS-S-firma_F_contig1100:18035..186171622815647.77149-CDS-S-firma_F_contig1100:18035..18617Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1100 18036..18617 +
1696949477.3554037-CDS-S-firma_F_contig1100:18035..186171696949477.3554037-CDS-S-firma_F_contig1100:18035..18617Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1100 18036..18617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1100.1339.1prot_S-firma_F_contig1100.1339.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1100 18036..18617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1100.1339.1

>prot_S-firma_F_contig1100.1339.1 ID=prot_S-firma_F_contig1100.1339.1|Name=mRNA_S-firma_F_contig1100.1339.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=194bp
EGLSPVQALGKVSALKMLVTERVGDPEEDETMEQARPHLSEMNSKGFLTI
NSQMGRKEVLKDPKDGSYYPMWQRAYVDGYLPRHLARKFHEHMEIVPGVV
VYTGAPVNNSEVYVDLDVPVTIDNDRVYSRSPMAPDSNIKHLEVMVLPEV
ASIMRHKRCKDLVIMDAIHARIVDTEWGRPWWLFDKIIQVLDKM
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mRNA from alignment at S-firma_F_contig1100:18036..18617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1100.1339.1 ID=mRNA_S-firma_F_contig1100.1339.1|Name=mRNA_S-firma_F_contig1100.1339.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=582bp|location=Sequence derived from alignment at S-firma_F_contig1100:18036..18617+ (Sphaerotrichia firma ET2_F female)
GAGGGTTTGTCCCCCGTACAAGCTCTAGGAAAAGTGAGTGCTCTGAAAAT
GCTAGTCACGGAGCGAGTTGGGGATCCGGAGGAAGATGAGACGATGGAAC
AGGCAAGACCACATTTATCTGAAATGAACAGCAAGGGTTTTTTAACCATC
AACTCCCAGATGGGAAGAAAAGAAGTGCTTAAGGATCCAAAGGATGGCTC
ATACTACCCGATGTGGCAAAGGGCGTATGTCGATGGCTACTTGCCGAGGC
ATTTGGCTCGTAAGTTCCACGAGCACATGGAGATAGTTCCCGGAGTGGTT
GTTTACACCGGGGCTCCTGTCAACAACTCGGAGGTATACGTTGACCTAGA
TGTGCCGGTGACAATAGACAATGACAGAGTTTACAGCCGTTCGCCCATGG
CACCCGATTCGAATATCAAACATCTCGAAGTCATGGTTCTCCCGGAGGTG
GCATCAATCATGCGTCACAAAAGGTGTAAGGATCTCGTGATCATGGACGC
AATCCACGCGAGGATCGTGGACACCGAGTGGGGAAGGCCTTGGTGGTTGT
TTGATAAAATTATTCAAGTGCTCGACAAGATG
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Coding sequence (CDS) from alignment at S-firma_F_contig1100:18036..18617+

>mRNA_S-firma_F_contig1100.1339.1 ID=mRNA_S-firma_F_contig1100.1339.1|Name=mRNA_S-firma_F_contig1100.1339.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1164bp|location=Sequence derived from alignment at S-firma_F_contig1100:18036..18617+ (Sphaerotrichia firma ET2_F female)
GAGGGTTTGTCCCCCGTACAAGCTCTAGGAAAAGTGAGTGCTCTGAAAAT
GCTAGTCACGGAGCGAGTTGGGGATCCGGAGGAAGATGAGACGATGGAAC
AGGCAAGACCACATTTATCTGAAATGAACAGCAAGGGTTTTTTAACCATC
AACTCCCAGATGGGAAGAAAAGAAGTGCTTAAGGATCCAAAGGATGGCTC
ATACTACCCGATGTGGCAAAGGGCGTATGTCGATGGCTACTTGCCGAGGC
ATTTGGCTCGTAAGTTCCACGAGCACATGGAGATAGTTCCCGGAGTGGTT
GTTTACACCGGGGCTCCTGTCAACAACTCGGAGGTATACGTTGACCTAGA
TGTGCCGGTGACAATAGACAATGACAGAGTTTACAGCCGTTCGCCCATGG
CACCCGATTCGAATATCAAACATCTCGAAGTCATGGTTCTCCCGGAGGTG
GCATCAATCATGCGTCACAAAAGGTGTAAGGATCTCGTGATCATGGACGC
AATCCACGCGAGGATCGTGGACACCGAGTGGGGAAGGCCTTGGTGGTTGT
TTGATAAAATTATTCAAGTGCTCGACAAGATGGAGGGTTTGTCCCCCGTA
CAAGCTCTAGGAAAAGTGAGTGCTCTGAAAATGCTAGTCACGGAGCGAGT
TGGGGATCCGGAGGAAGATGAGACGATGGAACAGGCAAGACCACATTTAT
CTGAAATGAACAGCAAGGGTTTTTTAACCATCAACTCCCAGATGGGAAGA
AAAGAAGTGCTTAAGGATCCAAAGGATGGCTCATACTACCCGATGTGGCA
AAGGGCGTATGTCGATGGCTACTTGCCGAGGCATTTGGCTCGTAAGTTCC
ACGAGCACATGGAGATAGTTCCCGGAGTGGTTGTTTACACCGGGGCTCCT
GTCAACAACTCGGAGGTATACGTTGACCTAGATGTGCCGGTGACAATAGA
CAATGACAGAGTTTACAGCCGTTCGCCCATGGCACCCGATTCGAATATCA
AACATCTCGAAGTCATGGTTCTCCCGGAGGTGGCATCAATCATGCGTCAC
AAAAGGTGTAAGGATCTCGTGATCATGGACGCAATCCACGCGAGGATCGT
GGACACCGAGTGGGGAAGGCCTTGGTGGTTGTTTGATAAAATTATTCAAG
TGCTCGACAAGATG
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