mRNA_S-firma_F_contig10994.1310.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10994.1310.1
Unique NamemRNA_S-firma_F_contig10994.1310.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10994.1310.1 vs. uniprot
Match: D8LSN8_ECTSI (WD-40 repeat family protein / mitotic checkpoint protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN8_ECTSI)

HSP 1 Score: 360 bits (924), Expect = 3.890e-115
Identity = 168/187 (89.84%), Postives = 183/187 (97.86%), Query Frame = 3 
Query:  279 PSQVFTMSVSDRRAVIGTSNRHIWVYDMRSLAEPEQRRVSSLKFQTRCVRVFPDQEGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGDKVFPVNAMAFHPIYGTFATGGCDNMVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAIAHPKDNIYVRDVIDSDVRPKARK 839
            P +VFTMSVSD RAV+GTSNRHIWVYDMRSLAEPEQRRVSSLK+QTRCVR+FPDQ+GYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGD+VFPVNAMAFHP+YGTFA+GGCD MVNIWDGKNKKRLWQS+AY+TGI+SL+FNHDGTRLAIA+SYTFEQGAIAHPKD I+VRDV+DSDVRPKARK
Sbjct:  104 PGKVFTMSVSDMRAVVGTSNRHIWVYDMRSLAEPEQRRVSSLKYQTRCVRIFPDQKGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGDQVFPVNAMAFHPVYGTFASGGCDKMVNIWDGKNKKRLWQSSAYNTGISSLSFNHDGTRLAIASSYTFEQGAIAHPKDQIFVRDVMDSDVRPKARK 290
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BLAST of mRNA_S-firma_F_contig10994.1310.1 vs. uniprot
Match: A0A7S2UWG3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWG3_9STRA)

HSP 1 Score: 259 bits (662), Expect = 2.400e-76
Identity = 125/185 (67.57%), Postives = 147/185 (79.46%), Query Frame = 3 
Query:  279 PSQVFTMSVSDRRAVIGTSNRHIWVYDMRSL-AEPEQRRVSSLKFQTRCVRVFPDQEGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGDKVFPVNAMAFHPIYGTFATGGCDNMVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAIAHPKDNIYVRDVIDSDVRPK 830
            P +VFTM++SD R V+GTS R +  YDMR L A PE +R SSLK+QTR +R F D+ GYA+GS+EGRVAVE+FD S E+Q  KYAFKCHR  D +FPVNAMAFHPI+GTFATGGCD +VN+WDG+NKKRL Q   Y TGI+SLAFNHDG+ LAIA SYTFEQG I HP+D I +R V DSDVR K
Sbjct:  117 PGKVFTMALSDNRVVVGTSGRQVVTYDMRRLTAGPETQRESSLKYQTRVIRCFNDRTGYALGSIEGRVAVEFFDPSPEAQAKKYAFKCHRTADTIFPVNAMAFHPIFGTFATGGCDGIVNVWDGQNKKRLSQFPKYQTGISSLAFNHDGSLLAIAVSYTFEQGEIEHPEDTIVIRLVSDSDVRQK 301
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BLAST of mRNA_S-firma_F_contig10994.1310.1 vs. uniprot
Match: A0A835ZK40_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK40_9STRA)

HSP 1 Score: 248 bits (634), Expect = 5.470e-72
Identity = 117/187 (62.57%), Postives = 139/187 (74.33%), Query Frame = 3 
Query:  279 PSQVFTMSVSDRRAVIGTSNRHIWVYDMRSLAEPEQRRVSSLKFQTRCVRVFPDQEGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGDKVFPVNAMAFHPIYGTFATGGCDNMVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAIAHPKDNIYVRDVIDSDVRPKARK 839
            P +V++M V+  + V+G SNR + VYD+R L  PEQ R SSLKFQTRC+++ PD  GY + SVEGRVAVEY D S E Q  KYAFKCHR+GD +FPVNAMAFHP++GTFATGGCD  VN+WDG NKKRL     Y T I+S+AFN DG  LAIA+SYTFEQG   H  D IYVR+V   DV+PK RK
Sbjct:  142 PGKVYSMDVNGSKLVVGCSNRFVVVYDLRKLDRPEQMRESSLKFQTRCIKLMPDNSGYVLSSVEGRVAVEYLDPSPEVQSKKYAFKCHRQGDTIFPVNAMAFHPVFGTFATGGCDGTVNVWDGTNKKRLINYTGYPTSISSVAFNRDGMLLAIASSYTFEQGEKDHQPDAIYVREVNPHDVKPKPRK 328
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BLAST of mRNA_S-firma_F_contig10994.1310.1 vs. uniprot
Match: A0A7S2BKC8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BKC8_9STRA)

HSP 1 Score: 248 bits (632), Expect = 6.090e-72
Identity = 117/186 (62.90%), Postives = 144/186 (77.42%), Query Frame = 3 
Query:  279 PSQVFTMSVSDRRAVIGTSNRHIWVYDMRSLAEPEQRRVSSLKFQTRCVRVFPDQEGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGDKVFPVNAMAFHPIYGTFATGGCDNMVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAIAHPKDNIYVRDVIDSDVRPKAR 836
            P +VF+MSV+D R V+ T++R +  YD+R L  PE  R SSLK+QTRCVR FPD +GYA+ S+EGRVA+EYF    E++  KYAFKCHR    VFPVN++AFHP++GTFATGGCD  VNIWDGKNKKRL Q  ++ T IASL+FNHDGT LA+AASYTFE+G   HP D +Y+R + DSDVRPK R
Sbjct:  125 PGKVFSMSVTDSRLVVATADRRVVSYDLRMLDAPEFDRESSLKYQTRCVRTFPDGQGYALASIEGRVAIEYFSADDEAK--KYAFKCHRVQQTVFPVNSIAFHPLHGTFATGGCDGFVNIWDGKNKKRLCQLPSFPTSIASLSFNHDGTMLAVAASYTFEEGEKDHPPDQLYIRMISDSDVRPKPR 308
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BLAST of mRNA_S-firma_F_contig10994.1310.1 vs. uniprot
Match: A0A5J4YAF9_9CHLO (Mitotic checkpoint BUB3-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YAF9_9CHLO)

HSP 1 Score: 246 bits (629), Expect = 3.150e-71
Identity = 117/193 (60.62%), Postives = 152/193 (78.76%), Query Frame = 3 
Query:  279 PSQVFTMSVSDRRAVIGTSNRHIWVYDMRSL--AEPEQRRVSSLKFQTRCVRVFPDQEGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKG----DKVFPVNAMAFHPIYGTFATGGCDNMVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAIAHPKDNIYVRDVIDSDVRPKARK 839
            P +VF+M+ S  R V+GTS RH+ +YD+RS+   +PEQ R SSLK+QTRC+R +P+  GYA+GS+EGRVA+EYFD S++ Q  KYAFKCHR+     D VFPVNA+AFHPI+GTFATGGCD +VNIWDG++KKRL+Q   Y T IA++AFN DG+ LA+A+SYT EQG I HP D +Y+R V +S+V+PK RK
Sbjct:  141 PGKVFSMAQSGSRMVVGTSGRHVLIYDLRSIKSGQPEQTRESSLKYQTRCIRCYPNGTGYALGSIEGRVAMEYFDNSEQVQAKKYAFKCHRRSEAGRDVVFPVNAIAFHPIFGTFATGGCDGVVNIWDGEHKKRLFQIAKYPTSIAAVAFNADGSLLAVASSYTHEQGDIDHPPDAVYLRTVNESEVKPKPRK 333
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BLAST of mRNA_S-firma_F_contig10994.1310.1 vs. uniprot
Match: A0A7S2HTA8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HTA8_9STRA)

HSP 1 Score: 245 bits (625), Expect = 8.720e-71
Identity = 112/186 (60.22%), Postives = 148/186 (79.57%), Query Frame = 3 
Query:  279 PSQVFTMSVSDRRAVIGTSNRHIWVYDMRSLAEPEQRRVSSLKFQTRCVRVFPDQEGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKGDKVFPVNAMAFHPIYGTFATGGCDNMVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAIAHPKDNIYVRDVIDSDVRPKAR 836
            P + FTM++++ R V+GT++R I  YD+R+L++PE  R SSLK+QTRC+R FPD EG+A+ S+EGRVA+EYF  S E++  KYAFKCHR  + VFPVNA+AFHPI+GTFATGGCD  VN+WDG+NKKRL Q  +Y T IASL+FN DGT LA+A+SYTFE+G   HP D +++R + D+DV+PK R
Sbjct:  139 PGKAFTMALTETRIVVGTADRRIVCYDIRNLSQPEFSRESSLKYQTRCIRAFPDGEGFALSSIEGRVAIEYF--SPEAEAKKYAFKCHRVMNMVFPVNAIAFHPIHGTFATGGCDGYVNVWDGRNKKRLCQLPSYPTSIASLSFNRDGTMLAVASSYTFEEGEKDHPPDQLFIRHISDADVKPKPR 322
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BLAST of mRNA_S-firma_F_contig10994.1310.1 vs. uniprot
Match: UPI001FB078F4 (mitotic checkpoint protein BUB3.2 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB078F4)

HSP 1 Score: 241 bits (615), Expect = 3.770e-69
Identity = 109/188 (57.98%), Postives = 148/188 (78.72%), Query Frame = 3 
Query:  279 PSQVFTMSVSDRRAVIGTSNRHIWVYDMRSLAEPEQRRVSSLKFQTRCVRVFPDQEGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKG----DKVFPVNAMAFHPIYGTFATGGCDNMVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAIAHPKDNIYVRDVIDSDVRPK 830
            P +++++S+   R V+ T+ RH+ +YD+R++++PEQRR SSLK+QTRCVR +P+  GYA+ SVEGRVA+E+FD S+  Q  KYAFKCHRK     D V+PVNA+AFHPIYGTFATGGCD  VN+WDG NKKRL+Q + Y T IA+L+F+ DG  LA+A+SYT+E+G   H  D+I+VR VI+S+V+PK
Sbjct:  144 PERIYSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAGQSKKYAFKCHRKTEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQFSKYPTSIAALSFSRDGRLLAVASSYTYEEGDKTHEPDSIFVRSVIESEVKPK 331
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BLAST of mRNA_S-firma_F_contig10994.1310.1 vs. uniprot
Match: UPI001C276B2B (mitotic checkpoint protein BUB3.1-like isoform X2 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C276B2B)

HSP 1 Score: 238 bits (608), Expect = 8.470e-69
Identity = 111/188 (59.04%), Postives = 145/188 (77.13%), Query Frame = 3 
Query:  279 PSQVFTMSVSDRRAVIGTSNRHIWVYDMRSLAEPEQRRVSSLKFQTRCVRVFPDQEGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKG----DKVFPVNAMAFHPIYGTFATGGCDNMVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAIAHPKDNIYVRDVIDSDVRPK 830
            P +V++MSV   R V+ T+ RH+ VYD+R++++PEQRR SSLK+QTRCVR +P+  GYA+ SVEGRVA+E+FD S+  Q  KYAFKCHRK     D V+PVNA+AFHPIYGTFATGGCD  VN+WDG NKKRL+Q   Y T IA+++F+ DG  LA+A+SYT+E+G  AH  D I+VR V + +V+PK
Sbjct:   93 PERVYSMSVVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSETGQSKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYTKYPTSIAAVSFSRDGRLLAVASSYTYEEGDKAHEPDAIFVRSVNEVEVKPK 280
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BLAST of mRNA_S-firma_F_contig10994.1310.1 vs. uniprot
Match: F2ULS7_SALR5 (Mitotic checkpoint protein BUB3 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2ULS7_SALR5)

HSP 1 Score: 239 bits (611), Expect = 8.970e-69
Identity = 104/190 (54.74%), Postives = 147/190 (77.37%), Query Frame = 3 
Query:  279 PSQVFTMSVSDRRAVIGTSNRHIWVYDMRSLAEPEQRRVSSLKFQTRCVRVFPDQEGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKG----DKVFPVNAMAFHPIYGTFATGGCDNMVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAIAHPKDNIYVRDVIDSDVRPKAR 836
            P +V+TM+++D R ++G + RH+WV+++ +++  EQRR SS+KFQTRC+R  PD +GY + S+EGRVAV+Y D S+ SQ  K+AFKCHR      D ++PVNA+AFHP +GTFATGGCD +VN+WDG N+KR++Q + Y T IASL+FNHDG+ LAIAASYT+E+G   HP D I++R + + +V+PK R
Sbjct:  133 PDKVYTMALADDRVIVGMAGRHVWVWNLNNMSAVEQRRESSVKFQTRCIRAMPDAQGYVLASIEGRVAVDYLDPSESSQKRKFAFKCHRSKENGRDVIYPVNAVAFHPTFGTFATGGCDGLVNVWDGVNRKRVYQFHEYPTSIASLSFNHDGSLLAIAASYTYEEGDKPHPPDAIFIRRITEENVKPKPR 322
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BLAST of mRNA_S-firma_F_contig10994.1310.1 vs. uniprot
Match: A0A6A5MFH2_LUPAL (Uncharacterized protein n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5MFH2_LUPAL)

HSP 1 Score: 239 bits (611), Expect = 1.410e-68
Identity = 112/188 (59.57%), Postives = 146/188 (77.66%), Query Frame = 3 
Query:  279 PSQVFTMSVSDRRAVIGTSNRHIWVYDMRSLAEPEQRRVSSLKFQTRCVRVFPDQEGYAVGSVEGRVAVEYFDTSKESQDNKYAFKCHRKG----DKVFPVNAMAFHPIYGTFATGGCDNMVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAIAHPKDNIYVRDVIDSDVRPK 830
            P +V+++S+   R V+ T+ RH+ VYD+R++++PEQRR SSLK+QTRCVR +P+  GYA+ SVEGRVA+E+FD S+ SQ  KYAFKCHRK     D V+PVNAMAFHPIYGTFATGGCD  VN+WDG NKKRL+Q + Y + IA+L+F+ DG  LA+A+SYTFE G   H +D IYVR V + +V+PK
Sbjct:  142 PERVYSLSLVGHRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEPSQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGYVNVWDGSNKKRLYQYSKYPSSIAALSFSRDGRLLAVASSYTFEDGPKPHEQDAIYVRSVNEIEVKPK 329
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10994.1310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSN8_ECTSI3.890e-11589.84WD-40 repeat family protein / mitotic checkpoint p... [more]
A0A7S2UWG3_9STRA2.400e-7667.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZK40_9STRA5.470e-7262.57WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S2BKC8_9STRA6.090e-7262.90Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5J4YAF9_9CHLO3.150e-7160.62Mitotic checkpoint BUB3-like n=1 Tax=Trebouxia sp.... [more]
A0A7S2HTA8_9STRA8.720e-7160.22Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI001FB078F43.770e-6957.98mitotic checkpoint protein BUB3.2 n=1 Tax=Impatien... [more]
UPI001C276B2B8.470e-6959.04mitotic checkpoint protein BUB3.1-like isoform X2 ... [more]
F2ULS7_SALR58.970e-6954.74Mitotic checkpoint protein BUB3 n=1 Tax=Salpingoec... [more]
A0A6A5MFH2_LUPAL1.410e-6859.57Uncharacterized protein n=2 Tax=Lupinus albus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10994contigS-firma_F_contig10994:393..4908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LSN8
Preferred nameBUB3
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K02180,ko:K04532,ko:K14298
KEGG TC1.I.1
KEGG Pathwayko03013,ko04110,ko04111,ko05010,ko05164,ko05166,map03013,map04110,map04111,map05010,map05164,map05166
KEGG ModuleM00427
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008608,GO:0009056,GO:0009057,GO:0009790,GO:0009792,GO:0009987,GO:0010498,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0019538,GO:0019941,GO:0022402,GO:0022414,GO:0023052,GO:0030071,GO:0030163,GO:0031145,GO:0031570,GO:0031577,GO:0031974,GO:0031981,GO:0032182,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033316,GO:0033597,GO:0034613,GO:0035556,GO:0040020,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044774,GO:0044779,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0048285,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051179,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051603,GO:0051641,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070013,GO:0070727,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0072395,GO:0072413,GO:0072416,GO:0072477,GO:0072480,GO:0072486,GO:0098687,GO:0098813,GO:0140014,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1901993,GO:1901994,GO:1902099,GO:1902100,GO:1902102,GO:1902103,GO:1903046,GO:1903047,GO:1905132,GO:1905133,GO:1905818,GO:1905819,GO:1990298,GO:2000241,GO:2000242,GO:2000816,GO:2001251
Evalue8.27e-125
EggNOG OGsKOG1036@1|root,KOG1036@2759|Eukaryota
Descriptionspindle assembly checkpoint
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Exons4
Model size2457
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10994.1310.1prot_S-firma_F_contig10994.1310.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10994 557..3293 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.0354424-UTR-S-firma_F_contig10994:392..5561622815644.0354424-UTR-S-firma_F_contig10994:392..556Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10994 393..556 +
1696949474.6708798-UTR-S-firma_F_contig10994:392..5561696949474.6708798-UTR-S-firma_F_contig10994:392..556Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10994 393..556 +
1622815644.0929368-UTR-S-firma_F_contig10994:3293..49081622815644.0929368-UTR-S-firma_F_contig10994:3293..4908Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10994 3294..4908 +
1696949474.7427983-UTR-S-firma_F_contig10994:3293..49081696949474.7427983-UTR-S-firma_F_contig10994:3293..4908Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10994 3294..4908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.046521-CDS-S-firma_F_contig10994:556..8981622815644.046521-CDS-S-firma_F_contig10994:556..898Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10994 557..898 +
1696949474.690653-CDS-S-firma_F_contig10994:556..8981696949474.690653-CDS-S-firma_F_contig10994:556..898Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10994 557..898 +
1622815644.056973-CDS-S-firma_F_contig10994:1725..18451622815644.056973-CDS-S-firma_F_contig10994:1725..1845Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10994 1726..1845 +
1696949474.7036784-CDS-S-firma_F_contig10994:1725..18451696949474.7036784-CDS-S-firma_F_contig10994:1725..1845Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10994 1726..1845 +
1622815644.0690494-CDS-S-firma_F_contig10994:2318..24641622815644.0690494-CDS-S-firma_F_contig10994:2318..2464Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10994 2319..2464 +
1696949474.7134442-CDS-S-firma_F_contig10994:2318..24641696949474.7134442-CDS-S-firma_F_contig10994:2318..2464Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10994 2319..2464 +
1622815644.0819728-CDS-S-firma_F_contig10994:3223..32931622815644.0819728-CDS-S-firma_F_contig10994:3223..3293Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10994 3224..3293 +
1696949474.730333-CDS-S-firma_F_contig10994:3223..32931696949474.730333-CDS-S-firma_F_contig10994:3223..3293Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10994 3224..3293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10994.1310.1

>prot_S-firma_F_contig10994.1310.1 ID=prot_S-firma_F_contig10994.1310.1|Name=mRNA_S-firma_F_contig10994.1310.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=226bp
MGASGADDRNSSGRRRTKKQKQKLHTPPRLSPPGPPRRPSQVFTMSVSDR
RAVIGTSNRHIWVYDMRSLAEPEQRRVSSLKFQTRCVRVFPDQEGYAVGS
VEGRVAVEYFDTSKESQDNKYAFKCHRKGDKVFPVNAMAFHPIYGTFATG
GCDNMVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQG
AIAHPKDNIYVRDVIDSDVRPKARK*
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mRNA from alignment at S-firma_F_contig10994:393..4908+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10994.1310.1 ID=mRNA_S-firma_F_contig10994.1310.1|Name=mRNA_S-firma_F_contig10994.1310.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4516bp|location=Sequence derived from alignment at S-firma_F_contig10994:393..4908+ (Sphaerotrichia firma ET2_F female)
CGTTTTGTATATAAAATGTTCTACAAACGTCAGCCGTCTGCTACATCCAG
CCTGTGAATCGCAAATCGTTCCAGGGGGACTGCTGCAGACACACTTTTTT
GGCCCATCTTCACTACACCTCCTGTGTGACCCCGGGTGGGTCGTCTAGCT
AGTCGTAGTGGAGGATGGGGGCCAGTGGGGCAGACGACAGAAACTCTAGT
GGGAGGAGAAGAACAAAAAAGCAAAAACAAAAACTACATACACCCCCGCG
CCTCTCGCCCCCGGGCCCCCCCCGCCGCCCGTCGCAGGTGTTCACGATGT
CGGTGTCGGACCGGCGTGCCGTGATCGGGACCTCGAACCGGCACATCTGG
GTGTACGACATGCGGAGCCTGGCGGAGCCGGAGCAGCGGCGAGTGAGCAG
CCTCAAGTTCCAGACGCGCTGCGTGCGGGTGTTCCCCGACCAGGAGGGGT
ACGCCGTGGGGTCGGTGGAGGGGAGGGTGGCGGTCGAGTACTTCGACACC
TCCAAGGTGCGTGCGGCGCGAGGGGAGGACGGGACTGTGGTCTGTGTTGT
GTTGTTTTACGGGAAGTTTCTGACCTTTTCGACCTTCCTGGTTCGATGAC
GTATGCGGGACTGCCAAAAAAAGTTTTTCGGCGTGGTGGTGGTGGTGGTG
GTGGTGCTTTGGCGTTTTCTTTTTGTGTCGTTGACGGCGGGTTTGGGGTG
CTTGTCGTTGTTTGTTTGCTGGTGCTCTTGTTGGTGATAAAACTCCCGTT
GTAGGCATGTGTGTATATATGTACTTCGAAGTATGTATGTATGTGTGTCG
TTTCGTGTTGTTGGCCCTTGTCCTAGGTTGCTGTTGCTTTGTAGCATGCT
TTCGCATTGGTTCTCGCGGATTGGTTCGTGGGCCAGCCACCGTACTGAAG
AATGTGGCGAGAGCCAGGCAATGTGTGTGTGTGTGTGTGTGTGTGTGTTT
TCTTATTTTTCGTCTCACGTATTTTGGCGACAGATAGTTCCCCTGAAATC
AAGGCGAGACGTGTACTACATACACCTTGCGGCGCATTTAGGGTACTACA
CTTTGCAGGGTATTTTTATGTACAACCTAGAACCGACCGAGGTAACACAG
GAAGGTGGGGAAAGGTAAATAAGCACTGGGGCCTTTTTTCAACAACCTTT
TTTTCTTCTTGTGATGCATAATCCCCTGCCAAAACCCCCAAAAAACATAA
TCACAAATGAAAATAATTGAACACGCCCATAAATTTATGCTTTATATATA
TAGGGGTGTTTTACTCACCAAAATCCTGGGTGTGACTGAAAACGAAGATA
CATGGGGGCCCCGCGGCTTGCGCCTTTTTGCAGGAGTCTCAAGACAACAA
GTACGCCTTCAAGTGCCACCGCAAGGGCGACAAAGTGTTCCCCGTCAACG
CGATGGCCTTCCACCCCATCTACGGCACCTTCGCCACGGGGGGCTGCGAC
AACGTGAGTTTTTCCCTCCGTTCCTTTGTCGTTTTTTGTTTTCCCCCTCT
ACTTCTTTCCGATCTTTGATCTCTGATTTTTTATCTTTGATCTTTGATCC
TTGATCTCTGATTTTTCATCCTGATCTTTGATCTTTGCCGTCCCACTCCC
ACTCCCGCATTTGTTGCCTTTTGATTTTAGTGTTTGTCACCCCTTCCCCC
CCCCCGCCGTCGCCCCCGCCGTCCCGCCCCCCTTTCTCCCTTTTGTTTTG
CGTTGTCGGCGCGTACAACTATAATACATAGCTGTCGTTGTTTGGCCGTG
TACCTATCTTAAGAGAGCTGCTACGGCGCGACTTTTGCGTCTGTGTTGAG
AGGTGCTTGCGCTTGCGTGTCTGACACCGAAGTGCCTTACGGTGTCGAGT
GTTTTGTGTTCGCCCCCCGTCCCCGCCGCAAACCCCCGTCAATGTTTCAA
CGACGACCCCCCCCCACTGTTTGCAGATGGTGAACATCTGGGACGGGAAG
AACAAGAAACGGCTGTGGCAGTCGAACGCCTACTCCACGGGCATCGCGTC
GCTGGCGTTCAACCATGACGGCACACGGCTCGCCATCGCCGCTTCCTACA
CGTTCGAGCAGGGGGCCATTGCGTGAGTTTTTAGTAAATTTTCTACATTC
GTCAGCCGTATGCGTCCCTCCTGTGAATAAGTCGTTCCAGGGGGACTGTT
GTATACACACTTACCCTCCTCGTCCCAGCCAACAGCACAAAATCCGCAAT
CCGTTAGGTTTATTTGTTGTTTCGTTTCGTAGTTTCCAAGGGGGTATGTT
GTTCAGCGTATGTGTGTTATCTTCCGTCGTCACCGAAAGTGTAAAAAGGT
TTTTCTCCCTTCCCGGCGTGGATGTCGTTCGTTCGTGGCTGTGGTCGTTG
TTGTTTCTGTGTTGGTTAGTTTTTCTGTAAAAAAAACTCCAAACGTCAGC
CGTCTACTGCTGTACGTCCAGCCTGTGAATAAAAAGTCTTTCCAGGGGGA
CTGTTTTTTGCGTTTTTTTGTGGCAACCGTGTGTACCTAGTGTGGTCTTT
TGGTTTGGTGGTGGTGGTGGTGGCGGTGGTGGTCGTGTTCGTGGTGGCAC
GATTTTGTTTCAATTGTGGTGGTGGTGGTGGTACTCCTTCTTTGGCAACG
TCCGCGCCTCAGAAGCCATTCCTCCTCGAGACTCCGTTTGTGTTCCGCTT
TCGTCTGTTTCGCCCCGCGGCGGGTCGTAACTGCCAACCGGATGCAAGCG
CCACCCACGCTCCTTCACCAAGCCGATCCCCCCCCCCCCCCACCCCACCC
ACCCACCCACCCCCGACCCCCGCCGCCGTTGCTGTCGCTGCTCCTTCGCA
ACGTGTTTCTCCTTTGTTTTTTGAAAAAAAGTCACCCGAAGGACAACATC
TACGTGAGAGACGTGATCGATTCCGACGTTCGGCCAAAGGCTCGCAAGTA
ACTTAGAGGACAGGAGAGGACAGGAGAGGACGCCAGGAGAAAGAGGGGAG
AGAAGCGGAGCCGGGGGGAGTGAGTTTTGGGGGCCTGTGCTGGTGCGCTG
TGGAGTAGGAGTAGGAGTACTGTAGGGGACCCCGTGGCTCGAGTGTCGCG
GTAGAAGGGGAAGGGGTTTGGGGGGCGCCGTAGATCGTAAAGATTGGATT
GAAAACCAGTGGCTTGTCGTAGTTTGTTGCCGATGGCGGTGGCGGTGGTG
GTGGTGGTGGCGGAGGCGGCGAAGCAGAAGAAGAAGACGGCGGAATCGCC
TCGAAGCTATTCGTCACTCGCCACCGCTGTCGGCGCGAGAGACAAACTAC
TTGTGGCGGCAAGGGTATATAAAATAGAAGGAGGGAAGCGACCCGCAAAA
CTGCTTCCCCCCCCCACAAGATTTTCTTGTGGCGTCTCATTTTGTTCGTT
GGCGCTTTGCGGCTGTCTCCCCCCCGGGGGCGGAGGGGGGTCCTCCCGTG
GAGCTTAGTTTTCGAGTGTTCCGGGTGATCCGAGAGACGTGCCGAAACGA
AACGTGCAGGCATTTTTTTGTCTCTCTTGACCCGGGATTGGCCGACCGAT
CACGGGAGAGATTTAGTTTCTGTCCTTTTTTGCCTGCCCTGCGTGTGCAC
TCTCTCTTTCTTGCTATTCGTTTATTTAGATGGTAACAAGTCGAGCAGAG
GGAGGAAGAGGAGAAAAACTATACATGACTTTGTTTCTTGTTGTGGGGAA
AAACGTGGTGCGTTCGTGTAATATTGACGTGGCATCTGCAACGCACCCAC
ACCGCTGGACTGGCAGGTGCAGCCAGCGCCTGCTCTCAGTTTGTTTTTTT
GTTGATCTGGCTGGGTTGGCTTGCCGTACAGGACGGTTTTGAGGGAGGGA
AACGCGCGCGCGGGGGGGGGAGGGTTGTTGAGGTTTGCCGGTAATGTGGC
GCTTGACGATGGTCAGTGGAGAAAGTGACGTACAGCAGTAGCAGCGTTGT
TAGCTGCTGTCTGGATTCTAACGCCCCCCATCGAGGAGAGGAACGACGAG
TGGACGGGTGGGTGGACACGTGCTCAGCTGAACGCCGCGAGTGTTCCGGC
GGTTTCTTTTTTTGGGTCGTGGTGTAGTCTAGGCCTACGTGTGCCTCTTT
CTCTCTCTCTCGCTCTTGTTCGTTTTTCTGTCTCTCGAGCCCTCTGTTGT
CAGCAGACGAACGCGTTGGCGGCCCCGGGGCTGCAAGCGGGCGAGCGACA
CGTTGTGGCGGTGCTATTCTACTACCGCTGTGTGCTTTTCTTTCTCGGTT
CTCGGCGCTGGTTGTTGTCTTTTTTTTGTGTCGGGAAAGACGGAAAGTGT
CGTCCGTCGAGGAGGCGGGGGGGCGCGCGGTTTGAGGGCAGTGTAGGGGA
ATACAGCGGTAGGCGTTGAGCGATGCCGTCTTTTCGTTGCTCTCTCCGTG
TCCGGAGGTTGTGCGAAATCTGTCGCGACGGGGGAGGGGCACCTGCCCCC
TGTGGGACGTGGCTCTGAAGGATGCATGCTCAAGGCCGAGATCTATGGGT
ATGACTTTATAAAAAAGACTTGGAGCCTGACTCTCACGGGGCCCCCAGAA
AAAATTGATATTCTTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10994:393..4908+

>mRNA_S-firma_F_contig10994.1310.1 ID=mRNA_S-firma_F_contig10994.1310.1|Name=mRNA_S-firma_F_contig10994.1310.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1356bp|location=Sequence derived from alignment at S-firma_F_contig10994:393..4908+ (Sphaerotrichia firma ET2_F female)
ATGGGGGCCAGTGGGGCAGACGACAGAAACTCTAGTGGGAGGAGAAGAAC
AAAAAAGCAAAAACAAAAACTACATACACCCCCGCGCCTCTCGCCCCCGG
GCCCCCCCCGCCGCCCGTCGCAGGTGTTCACGATGTCGGTGTCGGACCGG
CGTGCCGTGATCGGGACCTCGAACCGGCACATCTGGGTGTACGACATGCG
GAGCCTGGCGGAGCCGGAGCAGCGGCGAGTGAGCAGCCTCAAGTTCCAGA
CGCGCTGCGTGCGGGTGTTCCCCGACCAGGAGGGGTACGCCGTGGGGTCG
GTGGAGGGGAGGGTGGCGGTCGAGTACTTCGACACCTCCAAGATGGGGGC
CAGTGGGGCAGACGACAGAAACTCTAGTGGGAGGAGAAGAACAAAAAAGC
AAAAACAAAAACTACATACACCCCCGCGCCTCTCGCCCCCGGGCCCCCCC
CGCCGCCCGTCGCAGGTGTTCACGATGTCGGTGTCGGACCGGCGTGCCGT
GATCGGGACCTCGAACCGGCACATCTGGGTGTACGACATGCGGAGCCTGG
CGGAGCCGGAGCAGCGGCGAGTGAGCAGCCTCAAGTTCCAGACGCGCTGC
GTGCGGGTGTTCCCCGACCAGGAGGGGTACGCCGTGGGGTCGGTGGAGGG
GAGGGTGGCGGTCGAGTACTTCGACACCTCCAAGGAGTCTCAAGACAACA
AGTACGCCTTCAAGTGCCACCGCAAGGGCGACAAAGTGTTCCCCGTCAAC
GCGATGGCCTTCCACCCCATCTACGGCACCTTCGCCACGGGGGGCTGCGA
CAACGAGTCTCAAGACAACAAGTACGCCTTCAAGTGCCACCGCAAGGGCG
ACAAAGTGTTCCCCGTCAACGCGATGGCCTTCCACCCCATCTACGGCACC
TTCGCCACGGGGGGCTGCGACAACATGGTGAACATCTGGGACGGGAAGAA
CAAGAAACGGCTGTGGCAGTCGAACGCCTACTCCACGGGCATCGCGTCGC
TGGCGTTCAACCATGACGGCACACGGCTCGCCATCGCCGCTTCCTACACG
TTCGAGCAGGGGGCCATTGCATGGTGAACATCTGGGACGGGAAGAACAAG
AAACGGCTGTGGCAGTCGAACGCCTACTCCACGGGCATCGCGTCGCTGGC
GTTCAACCATGACGGCACACGGCTCGCCATCGCCGCTTCCTACACGTTCG
AGCAGGGGGCCATTGCTCACCCGAAGGACAACATCTACGTGAGAGACGTG
ATCGATTCCGACGTTCGGCCAAAGGCTCGCAAGTAATCACCCGAAGGACA
ACATCTACGTGAGAGACGTGATCGATTCCGACGTTCGGCCAAAGGCTCGC
AAGTAA
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