mRNA_S-firma_F_contig10984.1295.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10984.1295.1
Unique NamemRNA_S-firma_F_contig10984.1295.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10984.1295.1 vs. uniprot
Match: D8LIR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR2_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.160e-27
Identity = 75/142 (52.82%), Postives = 89/142 (62.68%), Query Frame = 2 
Query:   17 GGAMAAPPASAPFP--------PQEVSRNVLPVARDCGGGXXXX---EDGEGSVVGVED-TYDMLMVMSEATKEEAKERFLRGDYMGAAKKYFLAAETLDQRPPPTHPRLAGLRGRLRDLYLACMCNAAVAGFKAAKASPAP 406
            GG + A PA++P+P         Q+ SR+V  V  +  GG       ++GE S    E+  +D LMVMSEA KEE K +F RGDYMGAAK Y  AAE LD+R  PT  RL  LR RLR LY  CMCNAAVAGFKAA A+PAP
Sbjct:  388 GGGITAAPAASPWPLGVEGGDPAQDGSRSVPAVRSEAEGGAGWQGQQQEGEESADAEEEMVFDTLMVMSEAMKEEGKAKFQRGDYMGAAKAYRRAAEALDERAAPTADRLEPLRTRLRALYEKCMCNAAVAGFKAAAATPAP 529
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BLAST of mRNA_S-firma_F_contig10984.1295.1 vs. uniprot
Match: A0A6H5KY59_9PHAE (DRBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY59_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.750e-21
Identity = 53/75 (70.67%), Postives = 56/75 (74.67%), Query Frame = 2 
Query:  182 MSEATKEEAKERFLRGDYMGAAKKYFLAAETLDQRPPPTHPRLAGLRGRLRDLYLACMCNAAVAGFKAAKASPAP 406
            MSEA KEE K +F RGDYMGAAK Y  AAE LD+R  PT  RL  +R RLR LY  CMCNAAVAGFKAA ASPAP
Sbjct:    1 MSEAIKEEGKAKFQRGDYMGAAKAYRRAAEALDERTAPTADRLEPVRTRLRTLYEKCMCNAAVAGFKAAAASPAP 75
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10984.1295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIR2_ECTSI2.160e-2752.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY59_9PHAE1.750e-2170.67DRBM domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10984contigS-firma_F_contig10984:774..2827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size408
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10984.1295.1prot_S-firma_F_contig10984.1295.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10984 774..2802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.8582141-CDS-S-firma_F_contig10984:773..9291622815642.8582141-CDS-S-firma_F_contig10984:773..929Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10984 774..929 -
1696949473.9536731-CDS-S-firma_F_contig10984:773..9291696949473.9536731-CDS-S-firma_F_contig10984:773..929Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10984 774..929 -
1622815642.870961-CDS-S-firma_F_contig10984:1603..16751622815642.870961-CDS-S-firma_F_contig10984:1603..1675Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10984 1604..1675 -
1696949473.9622386-CDS-S-firma_F_contig10984:1603..16751696949473.9622386-CDS-S-firma_F_contig10984:1603..1675Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10984 1604..1675 -
1622815642.8827488-CDS-S-firma_F_contig10984:2649..28021622815642.8827488-CDS-S-firma_F_contig10984:2649..2802Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10984 2650..2802 -
1696949473.9713314-CDS-S-firma_F_contig10984:2649..28021696949473.9713314-CDS-S-firma_F_contig10984:2649..2802Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10984 2650..2802 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.8927584-UTR-S-firma_F_contig10984:2802..28271622815642.8927584-UTR-S-firma_F_contig10984:2802..2827Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10984 2803..2827 -
1696949473.9804378-UTR-S-firma_F_contig10984:2802..28271696949473.9804378-UTR-S-firma_F_contig10984:2802..2827Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10984 2803..2827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10984.1295.1

>prot_S-firma_F_contig10984.1295.1 ID=prot_S-firma_F_contig10984.1295.1|Name=mRNA_S-firma_F_contig10984.1295.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=127bp
MAAPPASAPFPPQEVSRNVLPVARDCGGGGGGGEDGEGSVVGVEDTYDML
MVMSEATKEEAKERFLRGDYMGAAKKYFLAAETLDQRPPPTHPRLAGLRG
RLRDLYLACMCNAAVAGFKAAKASPAP
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mRNA from alignment at S-firma_F_contig10984:774..2827-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10984.1295.1 ID=mRNA_S-firma_F_contig10984.1295.1|Name=mRNA_S-firma_F_contig10984.1295.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2054bp|location=Sequence derived from alignment at S-firma_F_contig10984:774..2827- (Sphaerotrichia firma ET2_F female)
GTGGTCGCCGGCGGGGGGGGGGGCGATGGCCGCTCCGCCTGCGAGTGCCC
CCTTCCCGCCGCAGGAAGTTTCGCGGAACGTTCTGCCGGTGGCTAGGGAT
TGCGGCGGCGGCGGCGGTGGCGGGGAGGACGGGGAAGGGAGCGTAGTGGG
GGTAGAGGACACGTACGACATGCTCATGGTGAGGCGCGGCCGTTGAGGAT
GGACTGTCGTTTGCTTTTAATAAGTTTTCTATCTACTGCTGTCATCAGCC
GTATACCGGTACGTCCGTCCTGTGAATAAGTCGTTCCAGGGGGACTGACT
GTTGTGTACACACTAACCCTCCCCGTCCCAGCCAACAGCACAAAATCCGC
AATCCGTTAGGTTTATTGGTTGTCTAGATTCGTAGTTTGCGAGGGGGTAT
GGTATTCAGCGTATGTGATGTGTTGTCTTCCGTCGGTCACCGGAAGTGAA
AAGAGGTTGCTCCTGTGGTACACAATAGGGCAGCGATATTTTTTTGCTCT
TGGCTGATTTCTGATTTCTAATTTCTAGTGTTTGTGTGGTACCGTATTTA
GTCTCGACATGGTGGTGCATGTATCGTAAAACGATTTCAGCGGAGGCAAA
AGAATGTGTCTGTCCAGACTCGAACCCGCGGAAATTTCTCCTAGCACTGC
GTGAATCGTAAAACGATCTCAGCGGAGGCAAGAATGTGTCTGTCCAGACT
CGAACCCGAGGAAATTTCTCCTAGCACTGCGTGAATCGTAAAACGATTTC
AGCGGAGGCAAGAATGTGTCTGTCCGGACTCGAACCCGAGGAAATTTCTC
CTAGCACTGCTCCACAGCCTCGCCCCACCCCGTGCCACCACGGCGCTACA
AATACCGCCGTACCAGATGTGCGGAGATGCGGAGACCAAGCGTTGTCCAC
CCGGCTTTCCCGAGTGAAATTGCACGAGGAAAAAGGGGGAGAAGTAAAGA
AGCGATTTCCACAAGATGGTGCGCACATCGACGCTCAAGATATTCAGTTT
TTTTTGGAAGTTTGCTATGTACGGAGTACTGTATGTGCAACACCTGCTGT
GCCGCCCTGCTTGCTGTCTCTGGTTCTGACGAGAGTCTTGGCCTGTTTTT
GTTTCTTTCGGTGGCGCTCGGTCGTGTTTTTGTTTTTTTGCGTTGTCGGA
AGGTGATGTCGGAAGCGACGAAAGAGGAAGCGAAGGAGAGGTTTCTCAGG
GGGGACTACATGGGCGCCGCAAAGGTGAGGTATCTTGTGTTTTCGACCGA
GCATCTCACGGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCGGCCCCGCCCCCGCCCCCCCCCC
CCCGCCCCCCCCCCCCCCCCCCCCCCCCCAGTCCCCTCCCCGGCACTCCT
TCGCCCACCGGTGGGTCGATTTTCCACGCCCCCACAACAGCGTGGATACC
GATACATCCTCTGGAATTGGACTCGAGTGTTAGGAGGTGGTGGATGATAC
ATCCCCTGGAATTGGACTCGAGTGTTAGGCGGTGGTGGATGGGCAAGGCC
TCGTCGAGGTGGAAGGAGCAGTCACGCTTCTTTCAACGGCAGGCCCATAA
AAGGGTGTGCCTATTTTCATGTCCTTCGGTACACGGCAGTCGACGTTGTT
GGCAGGTCATCTATCTCACCTGAGCCGGTGTGGAACGCTTAAACGACACG
AGGGAGGGCGGGGGGGGGGGGGGCAGCTCAAAAACATCCCTCCTGTACAC
CCGCTTTTTTTTCTTGTGGTCAGCCAATTCCAACGCGGTCGGCAATACAA
ATTACACCCGAAACACACACACGCCAAGCACTGCACGCACACACCCTCCT
GCTGCGATTGTCTTCTTCCTTCCTCCCTCCCTCCCTCCCTCCCACCAGAA
ATACTTCCTGGCCGCGGAGACCCTCGACCAGCGCCCCCCGCCCACCCACC
CCCGCCTCGCGGGGCTCCGCGGACGGCTCAGAGACCTGTACCTGGCGTGC
ATGTGCAACGCCGCCGTGGCGGGCTTCAAGGCCGCGAAGGCGTCCCCGGC
CCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10984:774..2827-

>mRNA_S-firma_F_contig10984.1295.1 ID=mRNA_S-firma_F_contig10984.1295.1|Name=mRNA_S-firma_F_contig10984.1295.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=762bp|location=Sequence derived from alignment at S-firma_F_contig10984:774..2827- (Sphaerotrichia firma ET2_F female)
ATGGCCGCTCCGCCTGCGAGTGCCCCCTTCCCGCCGCAGGAAGTTTCGCG
GAACGTTCTGCCGGTGGCTAGGGATTGCGGCGGCGGCGGCGGTGGCGGGG
AGGACGGGGAAGGGAGCGTAGTGGGGGTAGAGGACACGTACGACATGCTC
ATGATGGCCGCTCCGCCTGCGAGTGCCCCCTTCCCGCCGCAGGAAGTTTC
GCGGAACGTTCTGCCGGTGGCTAGGGATTGCGGCGGCGGCGGCGGTGGCG
GGGAGGACGGGGAAGGGAGCGTAGTGGGGGTAGAGGACACGTACGACATG
CTCATGGTGATGTCGGAAGCGACGAAAGAGGAAGCGAAGGAGAGGTTTCT
CAGGGGGGACTACATGGGCGCCGCAAAGGTGATGTCGGAAGCGACGAAAG
AGGAAGCGAAGGAGAGGTTTCTCAGGGGGGACTACATGGGCGCCGCAAAG
AAATACTTCCTGGCCGCGGAGACCCTCGACCAGCGCCCCCCGCCCACCCA
CCCCCGCCTCGCGGGGCTCCGCGGACGGCTCAGAGACCTGTACCTGGCGT
GCATGTGCAACGCCGCCGTGGCGGGCTTCAAGGCCGCGAAGGCGTCCCCG
GCCCCCAAATACTTCCTGGCCGCGGAGACCCTCGACCAGCGCCCCCCGCC
CACCCACCCCCGCCTCGCGGGGCTCCGCGGACGGCTCAGAGACCTGTACC
TGGCGTGCATGTGCAACGCCGCCGTGGCGGGCTTCAAGGCCGCGAAGGCG
TCCCCGGCCCCC
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