mRNA_S-firma_F_contig1091.1216.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1091.1216.1
Unique NamemRNA_S-firma_F_contig1091.1216.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1091.1216.1 vs. uniprot
Match: A0A2L2YG31_PARTP (Speckle-type POZ protein (Fragment) n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YG31_PARTP)

HSP 1 Score: 52.0 bits (123), Expect = 1.810e-5
Identity = 41/125 (32.80%), Postives = 63/125 (50.40%), Query Frame = 1 
Query:    4 DLFTLHKSGVLCDVRVASGDGAEVGAHGCVLGARSALFRGMLEAGLSESRSRVLSVGVEGVPADVAEGFLTFLYCGGVPPELEGESMALVAALGSAHMVERVTARAYRVLLSSFDLSDAGNVLNL 378
            DL  L  SG +CD+ +  G+   + AH  +LGARS +F+ M+E    ES S   SV +   P    + FL +LY G V       +M L+ +LG  + V+ +     R+LL+ F      +V N+
Sbjct:   21 DLRCLFTSGNMCDLEIKIGEDV-LHAHKLILGARSPVFKKMMEYDCLESSSN--SVTITDCPTLPFKKFLKYLYTGEVEDSTVN-TMMLLYSLGEKYNVKALPEACSRILLNKFITEPVDDVANI 141
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1091.1216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2L2YG31_PARTP1.810e-532.80Speckle-type POZ protein (Fragment) n=2 Tax=Parast... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1091contigS-firma_F_contig1091:18459..18836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog4565.Traes_3AL_096A543E1.2
PFAMsBTB,zf-TAZ
Max annot lvl35493|Streptophyta
GOsGO:0000151,GO:0000302,GO:0001101,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009553,GO:0009555,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010498,GO:0010556,GO:0014070,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030162,GO:0030163,GO:0031323,GO:0031326,GO:0031461,GO:0031625,GO:0032501,GO:0032502,GO:0032991,GO:0042221,GO:0042493,GO:0042542,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0046677,GO:0048229,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051252,GO:0051603,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Evalue2.24e-06
EggNOG OGsCOG5076@1|root,KOG1778@2759|Eukaryota,37NKM@33090|Viridiplantae,3G7VF@35493|Streptophyta,3KWBX@4447|Liliopsida,3IFHV@38820|Poales
DescriptionTAZ zinc finger, present in p300 and CBP
COG categoryK
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.6728144-CDS-S-firma_F_contig1091:18458..188361622815635.6728144-CDS-S-firma_F_contig1091:18458..18836Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1091 18459..18836 +
1696949469.4473639-CDS-S-firma_F_contig1091:18458..188361696949469.4473639-CDS-S-firma_F_contig1091:18458..18836Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1091 18459..18836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1091.1216.1prot_S-firma_F_contig1091.1216.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1091 18459..18836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1091.1216.1

>prot_S-firma_F_contig1091.1216.1 ID=prot_S-firma_F_contig1091.1216.1|Name=mRNA_S-firma_F_contig1091.1216.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=126bp
MDLFTLHKSGVLCDVRVASGDGAEVGAHGCVLGARSALFRGMLEAGLSES
RSRVLSVGVEGVPADVAEGFLTFLYCGGVPPELEGESMALVAALGSAHMV
ERVTARAYRVLLSSFDLSDAGNVLNL
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mRNA from alignment at S-firma_F_contig1091:18459..18836+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1091.1216.1 ID=mRNA_S-firma_F_contig1091.1216.1|Name=mRNA_S-firma_F_contig1091.1216.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=378bp|location=Sequence derived from alignment at S-firma_F_contig1091:18459..18836+ (Sphaerotrichia firma ET2_F female)
ATGGACCTGTTCACCCTCCACAAGTCCGGGGTGCTGTGCGACGTGCGTGT
GGCGAGCGGGGACGGGGCGGAGGTGGGGGCCCACGGGTGCGTTCTTGGGG
CCCGGTCGGCGCTGTTCCGGGGCATGCTGGAGGCAGGGCTGTCGGAGAGC
CGGAGCCGGGTGCTGTCGGTGGGAGTGGAGGGCGTTCCGGCGGATGTTGC
GGAGGGCTTCCTGACGTTTCTGTACTGCGGCGGTGTGCCACCGGAGCTGG
AGGGGGAGTCCATGGCGCTGGTGGCGGCGCTGGGGTCGGCGCACATGGTG
GAGCGGGTGACGGCGCGTGCGTACCGTGTGCTGCTGTCGTCGTTCGACTT
GAGCGACGCGGGGAACGTGTTGAACCTG
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Coding sequence (CDS) from alignment at S-firma_F_contig1091:18459..18836+

>mRNA_S-firma_F_contig1091.1216.1 ID=mRNA_S-firma_F_contig1091.1216.1|Name=mRNA_S-firma_F_contig1091.1216.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=756bp|location=Sequence derived from alignment at S-firma_F_contig1091:18459..18836+ (Sphaerotrichia firma ET2_F female)
ATGGACCTGTTCACCCTCCACAAGTCCGGGGTGCTGTGCGACGTGCGTGT
GGCGAGCGGGGACGGGGCGGAGGTGGGGGCCCACGGGTGCGTTCTTGGGG
CCCGGTCGGCGCTGTTCCGGGGCATGCTGGAGGCAGGGCTGTCGGAGAGC
CGGAGCCGGGTGCTGTCGGTGGGAGTGGAGGGCGTTCCGGCGGATGTTGC
GGAGGGCTTCCTGACGTTTCTGTACTGCGGCGGTGTGCCACCGGAGCTGG
AGGGGGAGTCCATGGCGCTGGTGGCGGCGCTGGGGTCGGCGCACATGGTG
GAGCGGGTGACGGCGCGTGCGTACCGTGTGCTGCTGTCGTCGTTCGACTT
GAGCGACGCGGGGAACGTGTTGAACCTGATGGACCTGTTCACCCTCCACA
AGTCCGGGGTGCTGTGCGACGTGCGTGTGGCGAGCGGGGACGGGGCGGAG
GTGGGGGCCCACGGGTGCGTTCTTGGGGCCCGGTCGGCGCTGTTCCGGGG
CATGCTGGAGGCAGGGCTGTCGGAGAGCCGGAGCCGGGTGCTGTCGGTGG
GAGTGGAGGGCGTTCCGGCGGATGTTGCGGAGGGCTTCCTGACGTTTCTG
TACTGCGGCGGTGTGCCACCGGAGCTGGAGGGGGAGTCCATGGCGCTGGT
GGCGGCGCTGGGGTCGGCGCACATGGTGGAGCGGGTGACGGCGCGTGCGT
ACCGTGTGCTGCTGTCGTCGTTCGACTTGAGCGACGCGGGGAACGTGTTG
AACCTG
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