mRNA_S-firma_F_contig10901.1204.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10901.1204.1
Unique NamemRNA_S-firma_F_contig10901.1204.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10901.1204.1 vs. uniprot
Match: A0A0L0DTL8_THETB (Nuclear pore complex protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DTL8_THETB)

HSP 1 Score: 158 bits (399), Expect = 1.090e-36
Identity = 213/703 (30.30%), Postives = 298/703 (42.39%), Query Frame = 1 
Query:    1 GLVSTLDPDAPLREP-AAHLVSEDTAAEADLLLSLWQLLRCGLIAQARNLCEQYGHPWRAAFLSGGFLWQDAAAGPTAQGVVER------GGNPFSLLWKWVCWQAGEKAAQAPAQATSSTARRVAATEHALYALLGGHATQLLKSPLVHTWDDAVWALCVCAREARLARKVAAVRQAQLEETAHVPVAASDGGAGATTALLAALDGGEFALSRVSAGGVWGHLRESALLGDGAKAGGSLPFAAIQERLVQAAEGGPGAADQVVVQLRALVGALAAPSAGGVPQAAVRLPTAPLPAEAL------SFCRFAAHYAVLHMPEGEPLVAACREVVLVYASHLMATLQVDKVARFVCHCGPAR-VHEYVKFLHLVVDAPQRALAVTEAHQWMASDLRAVLSLTVESLARLQGGGAGGVARLMAIKWLLQPSTPQFLGDAVAAANALMR-FLMTEPSPSRLVRSLSA-PQQAAAGGGNLGAATLLLVGSPADRLPPILPPNVLDLLEEHRGGQARPD-----DDLTHAIAEHSAWVQYLHARHAYAGWAAVLTEELPLPXXXXXXDGGHTHAARARFERDTIDHEEFLRAAEVEVRRRAADAALRLNQVLQAGADWLSPPEALAPRGDGNAGALFVSVDVGEV-RSTCLPPVALMLHDVLYRT---AMCLQVADVVADEVSRLSDLFPPAALRDLLTRVNLSAAQLL 2034
            GLV TLDPDAPLR+P A+ L  +D   E  LL  LW L++ G + +ARN+C + G PWRAA L GG  + DA      +   ER       GN   LLW+ +         Q  A   SS        E ALY +L G  + +L  PL  +W+D +WA C  A  + L   +A  R +   E     + A+   A   +A  + LD      + +S         +S  L    +A    PF  IQ+ L+ A E            L  L G   A SA  V +A   LP +   A A+      S   F     V   PE E   AA   ++  Y  HL+A+ Q   +A +      +R V  Y KFL  V D   RA A+  A      D+RA+ S  V ++       A    ++ +++WL     P    +A+  ANAL R  L+     +R   SL A P  A A    L A  +  V      L  +LP + LD+L   R G A  +         +A+ E    V YL    AY  W+ +L E  P+P           ++ +  ++++   H+E     +  +    A     LN  L   + WL     + P   G         D  E+ RS C+P +  MLH VLY T   A  L+VAD+VAD    L+  F PA LR LL    LS+ QLL
Sbjct:  187 GLVKTLDPDAPLRDPDASGLHPDDADLEERLLRHLWLLVKAGKLDEARNVCRKVGQPWRAASLGGGAAFHDAIYAGEVKLTGERIDDAAPAGNVQRLLWRQMV--------QVLASEASSQ------YERALYGVLAGSLSAVL--PLCTSWEDHLWARCATALTSVLDTHLATARPSANAELVRTGLPAAMDIAQPESAGASQLDMQSMFAALLSEA-------QSPELRTATRA----PFHTIQQLLITAQEN---------AALVTLAGWAVADSAAAV-EALDALPGSHAHARAILLRFGASLVLFFRSIEVALSPEAE---AAGVALLTGYVEHLIASGQSALIALYTAQLPSSRQVGIYAKFLEGVDDGSARADALRAAEA-ARLDVRAITSQVVRNIYLASEAEASDERKVHSLQWLC--FYPDQRAEALVQANALARSLLLAHVESARFDASLKATPADAVAA--LLAAVPVAKVEVTRQLLSVVLPADTLDIL---RDGWAEAELVEAPAREANAVHEFQCLVAYLEVLSAYDEWSNILFER-PVPPAEPDSS---RYSDKLMYDQEKKAHDEAYELWQQAMGDSTAVVLDLLNATLLFPSGWLKD---VVPIDHGRTAGDAARADQLELLRSVCIPSLCFMLHRVLYDTHDFAGSLKVADLVADPHYNLAATFSPAELRQLLRLFRLSSLQLL 834
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BLAST of mRNA_S-firma_F_contig10901.1204.1 vs. uniprot
Match: A0A024U1T4_9STRA (Nuclear pore complex protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1T4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.310e-19
Identity = 57/152 (37.50%), Postives = 80/152 (52.63%), Query Frame = 1 
Query:   13 TLDPDAPLREPAAHLVSEDTAAEADLLLSLWQLLRCGLIAQARNLCEQYGHPWRAAFLSGGFLWQDAAAGPTAQGVVERGGNPFSLLWKWVCWQAGEKAAQAPAQATSSTARRVAATEHALYALLGGHATQLLKSPLVHTWDDAVWALCVCA 468
            ++DPD+ LR+    + ++D   EADLL S+WQLLR G   +A  LC Q G PWRAA L+GG       +     G V+R GNPF ++WK +CWQ  +       +     +      E  +Y  L G+   LL+S L  +W+D  WAL   A
Sbjct:  389 SVDPDSTLRDGDFQVDNDDAEDEADLLKSVWQLLRAGQPREAAELCIQLGQPWRAASLNGGDF---CGSCDNDDGGVQRWGNPFRMVWKNMCWQFAQAPLNDGRKLHKGKSLEAREYESIIYGALSGNTAVLLRSALCESWEDHCWALLSAA 537
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BLAST of mRNA_S-firma_F_contig10901.1204.1 vs. uniprot
Match: A0A2P6VQT8_9CHLO (Nuclear pore complex protein n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VQT8_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 2.400e-15
Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 1 
Query:    4 LVSTLDPDAPLREPAAHLVSEDTAAEADLLLSLWQLLRCGLIAQARNLCEQYGHPWRAAFLSGGFLW--------QDAA-----AGPTAQGV---VERGGNPFSLLWKWVCWQAGEKAAQAPAQATSSTARRVAATEHALYALLGGHATQLLKSPLVHTWDDAVWALCVC 465
            LV+ LDPDAP R+  A L ++D   E  L   L++LLR G +A+A  LCE  G PWRAA L GG +          +AA     AG  AQ +   VE GG     LW+W C Q  E+A  A A+A+ +        E A+YA LG H  ++L  P+  +W+DA WA   C
Sbjct:  281 LVTELDPDAPSRQHKA-LHADDAKDEERLAARLFRLLRAGRVAEACQLCEAVGQPWRAASLGGGGVHGALPLGAAAEAADGLDPAGEQAQDLAAEVEGGGALLRALWRWSCLQLAERAGAA-AEASGAGLH-----EAAVYAALGCHVARVL--PVCTSWEDACWAYLRC 441
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BLAST of mRNA_S-firma_F_contig10901.1204.1 vs. uniprot
Match: UPI0014432E7F (nuclear pore complex protein Nup107 n=1 Tax=Megalopta genalis TaxID=115081 RepID=UPI0014432E7F)

HSP 1 Score: 76.3 bits (186), Expect = 1.330e-10
Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 1 
Query:    4 LVSTLDPDAPLRE--PAAHLVSEDTAAEADLLLSLWQLLRCGLIAQARNLCEQYGHPWRAAFLSGGFLWQDAA-AGPTAQGVVERGGNPFSLLWKWVCWQAGEKAAQAPAQATSSTARRVAATEHALYALLGGHATQLLKSPLVHTWDDAVWALCVCAREARLARKV 495
            L+S+LDPDAP+RE  P   L  ED   +A L   ++  +RCG +A+A+ L E  G PWRAA L G   +QD     P     +   GNP   LWK   W+  +              +R+     A+YA L G+  Q+L+  +  +W DA+WA      + ++ R++
Sbjct:  303 LISSLDPDAPIREGKPLHDLDRED---DARLEKRMFIEVRCGRLAKAQALAEHCGQPWRAACLLGWIPYQDPNYKNPLTDTKLPIEGNPNRSLWKLCAWELCQD-------------KRIGQFYRAVYASLCGNVQQMLQ--VATSWQDALWAHMKALLDIKVEREI 451
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BLAST of mRNA_S-firma_F_contig10901.1204.1 vs. uniprot
Match: UPI0013041FBE (nuclear pore complex protein Nup107 n=1 Tax=Nomia melanderi TaxID=2448451 RepID=UPI0013041FBE)

HSP 1 Score: 76.3 bits (186), Expect = 1.330e-10
Identity = 56/167 (33.53%), Postives = 82/167 (49.10%), Query Frame = 1 
Query:    4 LVSTLDPDAPLRE--PAAHLVSEDTAAEADLLLSLWQLLRCGLIAQARNLCEQYGHPWRAAFLSGGFLWQDAA-AGPTAQGVVERGGNPFSLLWKWVCWQAGEKAAQAPAQATSSTARRVAATEHALYALLGGHATQLLKSPLVHTWDDAVWALCVCAREARLARKV 495
            LVS+LDPDAP+RE  P   L  ED   +A L   ++  +RCG +++A+ L E  G PWRAA L G   + D     P +   +   GNP   LWK   W   +              +RV     A+YA L G+  Q+L+  +  +W DA+WA      + ++ R+V
Sbjct:  304 LVSSLDPDAPIREGKPLHDLDRED---DARLEKRMFIEVRCGRLSKAQALAEYCGQPWRAACLLGWIPYHDPNYKNPLSDTKLPIEGNPNRSLWKLCAWDLSQD-------------KRVGQFYRAIYASLCGNVQQMLQ--VASSWQDALWAFMKTLLDIKVEREV 452
[Close]
BLAST of mRNA_S-firma_F_contig10901.1204.1 vs. uniprot
Match: UPI0007670DAB (nuclear pore complex protein Nup107 n=1 Tax=Dufourea novaeangliae TaxID=178035 RepID=UPI0007670DAB)

HSP 1 Score: 73.9 bits (180), Expect = 6.610e-10
Identity = 56/167 (33.53%), Postives = 81/167 (48.50%), Query Frame = 1 
Query:    4 LVSTLDPDAPLRE--PAAHLVSEDTAAEADLLLSLWQLLRCGLIAQARNLCEQYGHPWRAAFLSGGFLWQDAA-AGPTAQGVVERGGNPFSLLWKWVCWQAGEKAAQAPAQATSSTARRVAATEHALYALLGGHATQLLKSPLVHTWDDAVWALCVCAREARLARKV 495
            LVS+LDPDAP+RE  P   L  ED   +A L   ++  +RCG + +A+ L E  G PWRAA L G     D     P +   +   GNP   LWK   W+  +              +RV     A+YA L G+  Q+L+  +  +W DA+WA      + ++ R+V
Sbjct:  226 LVSSLDPDAPIREGKPLHDLDRED---DARLEKRMFIEVRCGRLTKAQALAEHCGQPWRAACLLGWIPHHDPNYKNPLSDTKLSIEGNPNRSLWKLCAWELCQD-------------KRVGQFYRAIYASLCGNVQQMLQ--IACSWQDALWAYIKTLLDIKVEREV 374
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BLAST of mRNA_S-firma_F_contig10901.1204.1 vs. uniprot
Match: A0A2J7QXA4_9NEOP (Nuclear pore complex protein n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QXA4_9NEOP)

HSP 1 Score: 73.6 bits (179), Expect = 9.070e-10
Identity = 54/157 (34.39%), Postives = 78/157 (49.68%), Query Frame = 1 
Query:    4 LVSTLDPDAPLRE--PAAHLVSEDTAAEADLLLSLWQLLRCGLIAQARNLCEQYGHPWRAAFLSGGFLWQDAAAGPTAQGVVERG-----GNPFSLLWKWVCWQAGEKAAQAPAQATSSTARRVAATEHALYALLGGHATQLLKSPLVHTWDDAVWA 453
            +VSTLDPDAPLRE  P   +  ED   E+ L+  ++  +RCG + +A+ LC   G  WRAA L G  L  D     TA+G+ E       GNP   +WK + W+  E              +R+     A +A L GH + L+   +  +W+D +WA
Sbjct:  283 IVSTLDPDAPLREGKPLHDIDMED---ESRLVKEVFVQIRCGQLEEAQMLCMHTGQEWRAAALEGWRLHHDPNY-ETARGIDEVDKLPIEGNPNRDIWKLMAWRMAED-------------KRMPVYTRATFAALCGHLSALVD--VCQSWEDLLWA 420
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BLAST of mRNA_S-firma_F_contig10901.1204.1 vs. uniprot
Match: A0A6P3UUL5_BOMIM (Nuclear pore complex protein n=13 Tax=Apinae TaxID=70987 RepID=A0A6P3UUL5_BOMIM)

HSP 1 Score: 73.6 bits (179), Expect = 9.090e-10
Identity = 54/167 (32.34%), Postives = 81/167 (48.50%), Query Frame = 1 
Query:    4 LVSTLDPDAPLRE--PAAHLVSEDTAAEADLLLSLWQLLRCGLIAQARNLCEQYGHPWRAAFLSGGFLWQDAA-AGPTAQGVVERGGNPFSLLWKWVCWQAGEKAAQAPAQATSSTARRVAATEHALYALLGGHATQLLKSPLVHTWDDAVWALCVCAREARLARKV 495
            LVS+LDPDAP+RE  P   L  ED   +A +   ++  +RCG + +A+ L +  G PWRAA L G     D     P +   +   GNP   LWK   W+  ++             RRV      +YA L G+  Q+L+  +  +W DA+WA      + ++ R+V
Sbjct:  299 LVSSLDPDAPIREGKPLHDLDRED---DARMEKRMFIEVRCGRLQKAQALAQYCGQPWRAACLLGWIPHHDPNYQNPLSDSKLPIEGNPNRSLWKLCAWELSQE-------------RRVGQFYRTIYASLCGNVQQMLQ--VASSWQDALWAYMKTLLDIKVEREV 447
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BLAST of mRNA_S-firma_F_contig10901.1204.1 vs. uniprot
Match: A0A0L7RBR0_9HYME (Nuclear pore complex protein n=2 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7RBR0_9HYME)

HSP 1 Score: 73.6 bits (179), Expect = 9.100e-10
Identity = 55/167 (32.93%), Postives = 80/167 (47.90%), Query Frame = 1 
Query:    4 LVSTLDPDAPLRE--PAAHLVSEDTAAEADLLLSLWQLLRCGLIAQARNLCEQYGHPWRAAFLSGGFLWQDAA-AGPTAQGVVERGGNPFSLLWKWVCWQAGEKAAQAPAQATSSTARRVAATEHALYALLGGHATQLLKSPLVHTWDDAVWALCVCAREARLARKV 495
            LVS+LDPDAP+RE  P   L  ED   +A L   ++  +RCG + +A+ L E  G PWRAA L G     D     P +   +   GNP   LWK   W+  +              +RV     A+YA L G+  Q+L+  +  +W D +WA      + ++ R+V
Sbjct:  303 LVSSLDPDAPIRENKPLHDLDRED---DARLEKRMFIEVRCGRLQKAQALAEHCGQPWRAACLLGWIPHHDPNYRNPLSDTKLPIQGNPNRSLWKLCAWELSQD-------------KRVGQFYRAIYASLCGNVQQMLQ--VASSWQDGLWAYMKALLDIKVEREV 451
[Close]
BLAST of mRNA_S-firma_F_contig10901.1204.1 vs. uniprot
Match: A0A8K0KK25_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KK25_LADFU)

HSP 1 Score: 73.2 bits (178), Expect = 1.150e-9
Identity = 56/160 (35.00%), Postives = 74/160 (46.25%), Query Frame = 1 
Query:    4 LVSTLDPDAPLREPAAHLVSEDTAAEADLLLSLWQLLRCGLIAQARNLCEQYGHPWRAAFLSGGFLWQDAAAG-----PTAQGVVERGGNPFSLLWKWVCWQAGEKAAQAPAQATSSTARRVAATEHALYALLGGHATQLLKSPLVHTWDDAVWALCVCA 468
            LV+++DPDAPLRE    L   D   E  L   ++ LLRCG + +A+ LC   G  WRAA L G  L+ D+         T +  VE  GNP   +WK + W+  E               RV     A Y +L GH   LL   +  TW D +WA   C+
Sbjct:  278 LVTSMDPDAPLREQK-QLHDLDQEDEVRLARQIFLLLRCGQLGRAQALCCHCGQEWRAATLDGWRLFHDSNYNLPHIPHTQKTQVE--GNPNRDIWKLMAWRLAED-------------ERVHPFIRASYGMLCGHLPSLLN--VCTTWKDQLWARLRCS 419
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10901.1204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0DTL8_THETB1.090e-3630.30Nuclear pore complex protein n=1 Tax=Thecamonas tr... [more]
A0A024U1T4_9STRA4.310e-1937.50Nuclear pore complex protein n=2 Tax=Aphanomyces i... [more]
A0A2P6VQT8_9CHLO2.400e-1540.00Nuclear pore complex protein n=2 Tax=Micractinium ... [more]
UPI0014432E7F1.330e-1032.93nuclear pore complex protein Nup107 n=1 Tax=Megalo... [more]
UPI0013041FBE1.330e-1033.53nuclear pore complex protein Nup107 n=1 Tax=Nomia ... [more]
UPI0007670DAB6.610e-1033.53nuclear pore complex protein Nup107 n=1 Tax=Dufour... [more]
A0A2J7QXA4_9NEOP9.070e-1034.39Nuclear pore complex protein n=1 Tax=Cryptotermes ... [more]
A0A6P3UUL5_BOMIM9.090e-1032.34Nuclear pore complex protein n=13 Tax=Apinae TaxID... [more]
A0A0L7RBR0_9HYME9.100e-1032.93Nuclear pore complex protein n=2 Tax=Habropoda lab... [more]
A0A8K0KK25_LADFU1.150e-935.00Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10901contigS-firma_F_contig10901:1143..3341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog529818.AMSG_01851T0
Preferred nameNUP107
PFAMsNup84_Nup100
Max annot lvl2759|Eukaryota
KEGG koko:K12816,ko:K14301
KEGG TC1.I.1
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00355,M00427
GOsGO:0000003,GO:0000280,GO:0000724,GO:0000725,GO:0000910,GO:0000972,GO:0000973,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006406,GO:0006407,GO:0006606,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0006999,GO:0007049,GO:0007088,GO:0007110,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008585,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010965,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016458,GO:0016973,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0030154,GO:0030466,GO:0030703,GO:0031080,GO:0031081,GO:0031090,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031990,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033206,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034399,GO:0034501,GO:0034502,GO:0034504,GO:0034508,GO:0034605,GO:0034613,GO:0034622,GO:0034629,GO:0034641,GO:0035392,GO:0040029,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046545,GO:0046660,GO:0046907,GO:0046931,GO:0048137,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051029,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051292,GO:0051301,GO:0051321,GO:0051382,GO:0051383,GO:0051640,GO:0051641,GO:0051649,GO:0051664,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0060255,GO:0060341,GO:0061458,GO:0061640,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071427,GO:0071428,GO:0071459,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0072594,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090304,GO:0097064,GO:0097298,GO:0140013,GO:1900037,GO:1900180,GO:1900182,GO:1901360,GO:1902679,GO:1902680,GO:1903046,GO:1903506,GO:1903507,GO:1903508,GO:1903827,GO:1903829,GO:1905818,GO:2000112,GO:2000113,GO:2001141
Evalue1.79e-37
EggNOG OGsKOG1964@1|root,KOG1964@2759|Eukaryota
Descriptionposttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size2034
Cds size2034
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10901.1204.1prot_S-firma_F_contig10901.1204.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10901 1143..3341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.794521-CDS-S-firma_F_contig10901:1142..12571622815634.794521-CDS-S-firma_F_contig10901:1142..1257Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10901 1143..1257 -
1696949468.904365-CDS-S-firma_F_contig10901:1142..12571696949468.904365-CDS-S-firma_F_contig10901:1142..1257Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10901 1143..1257 -
1622815634.8080435-CDS-S-firma_F_contig10901:1323..20371622815634.8080435-CDS-S-firma_F_contig10901:1323..2037Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10901 1324..2037 -
1696949468.9282324-CDS-S-firma_F_contig10901:1323..20371696949468.9282324-CDS-S-firma_F_contig10901:1323..2037Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10901 1324..2037 -
1622815634.8177702-CDS-S-firma_F_contig10901:2136..33411622815634.8177702-CDS-S-firma_F_contig10901:2136..3341Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10901 2137..3341 -
1696949468.9362197-CDS-S-firma_F_contig10901:2136..33411696949468.9362197-CDS-S-firma_F_contig10901:2136..3341Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10901 2137..3341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10901.1204.1

>prot_S-firma_F_contig10901.1204.1 ID=prot_S-firma_F_contig10901.1204.1|Name=mRNA_S-firma_F_contig10901.1204.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=678bp
GLVSTLDPDAPLREPAAHLVSEDTAAEADLLLSLWQLLRCGLIAQARNLC
EQYGHPWRAAFLSGGFLWQDAAAGPTAQGVVERGGNPFSLLWKWVCWQAG
EKAAQAPAQATSSTARRVAATEHALYALLGGHATQLLKSPLVHTWDDAVW
ALCVCAREARLARKVAAVRQAQLEETAHVPVAASDGGAGATTALLAALDG
GEFALSRVSAGGVWGHLRESALLGDGAKAGGSLPFAAIQERLVQAAEGGP
GAADQVVVQLRALVGALAAPSAGGVPQAAVRLPTAPLPAEALSFCRFAAH
YAVLHMPEGEPLVAACREVVLVYASHLMATLQVDKVARFVCHCGPARVHE
YVKFLHLVVDAPQRALAVTEAHQWMASDLRAVLSLTVESLARLQGGGAGG
VARLMAIKWLLQPSTPQFLGDAVAAANALMRFLMTEPSPSRLVRSLSAPQ
QAAAGGGNLGAATLLLVGSPADRLPPILPPNVLDLLEEHRGGQARPDDDL
THAIAEHSAWVQYLHARHAYAGWAAVLTEELPLPPPPPPADGGHTHAARA
RFERDTIDHEEFLRAAEVEVRRRAADAALRLNQVLQAGADWLSPPEALAP
RGDGNAGALFVSVDVGEVRSTCLPPVALMLHDVLYRTAMCLQVADVVADE
VSRLSDLFPPAALRDLLTRVNLSAAQLL
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mRNA from alignment at S-firma_F_contig10901:1143..3341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10901.1204.1 ID=mRNA_S-firma_F_contig10901.1204.1|Name=mRNA_S-firma_F_contig10901.1204.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2199bp|location=Sequence derived from alignment at S-firma_F_contig10901:1143..3341- (Sphaerotrichia firma ET2_F female)
GGCCTGGTGAGCACCCTGGACCCCGACGCGCCCCTGCGGGAGCCCGCCGC
GCACCTGGTGTCCGAGGACACGGCGGCGGAGGCGGACTTGCTGCTGAGCC
TGTGGCAGCTGCTGCGGTGCGGCCTCATTGCCCAAGCCCGCAACCTGTGC
GAGCAGTACGGGCACCCGTGGCGGGCGGCCTTCCTCTCCGGCGGCTTCCT
GTGGCAGGACGCCGCCGCCGGCCCCACGGCGCAGGGCGTCGTGGAGCGGG
GCGGGAACCCGTTTTCGCTGCTGTGGAAGTGGGTGTGCTGGCAGGCTGGG
GAGAAGGCCGCCCAGGCGCCGGCGCAGGCGACGTCCTCCACCGCCCGCCG
GGTGGCGGCGACGGAGCACGCGCTGTACGCGCTGCTGGGCGGGCACGCCA
CCCAGTTGCTCAAGTCCCCCCTGGTGCACACCTGGGACGACGCCGTGTGG
GCGCTGTGTGTGTGCGCCCGGGAGGCCCGGCTTGCCCGCAAGGTGGCCGC
CGTGCGGCAAGCCCAGCTGGAGGAGACGGCCCACGTGCCCGTGGCGGCCT
CCGACGGCGGCGCGGGGGCGACGACGGCCCTGCTTGCCGCCCTGGACGGC
GGCGAGTTCGCGCTGTCCCGGGTGTCGGCCGGCGGCGTGTGGGGCCACCT
GCGGGAGTCTGCCCTGCTGGGGGACGGCGCCAAGGCCGGCGGCAGCCTGC
CCTTTGCCGCCATTCAGGAGCGCCTGGTGCAGGCGGCGGAGGGCGGCCCC
GGCGCCGCGGACCAGGTGGTTGTGCAGCTGCGCGCCCTCGTGGGCGCCCT
GGCGGCGCCGTCCGCGGGTGGCGTGCCGCAGGCGGCGGTGCGGCTGCCCA
CCGCCCCCCTCCCGGCGGAAGCGCTGTCATTTTGCCGGTTCGCGGCGCAC
TACGCCGTCCTGCACATGCCGGAGGGCGAGCCCCTGGTGGCCGCCTGCCG
GGAGGTGGTGCTCGTGTACGCCTCCCACCTCATGGCCACCCTGCAGGTGG
ACAAGGTGGCCCGCTTCGTGTGCCACTGCGGCCCCGCCCGCGTCCACGAA
TACGTCAAGTTCCTGCACCTGGTGGTGGACGCCCCCCAGCGGGCGCTGGC
CGTCACGGAGGCCCACCAGTGGATGGCGTCCGACCTCCGCGCCGTGCTCA
GCCTGACGGTGGAGTCCCTGGCGCGGCTCCAGGGGGGGGGCGCCGGTGGC
GTCGCGTACCTGCCGTCGGACTTTCCGCTGCCGGTGCCGCCCATGGACGC
CGCCATCACGCCGGCCCTGGCGGACAAGTTTGGCCTGGACCGCCCGACGT
GGAGCCGCCTGATGGCCATCAAGTGGCTCCTGCAGCCCAGCACACCGCAG
TTCCTGGGGGACGCCGTCGCCGCCGCCAACGCCCTCATGCGGTTCCTCAT
GACGGAGCCGTCGCCGTCGCGCCTTGTGCGGTCGCTGTCCGCGCCGCAGC
AGGCGGCTGCCGGCGGCGGCAACCTCGGCGCCGCCACCCTGCTGCTGGTG
GGGTCCCCAGCGGACCGCCTGCCGCCCATCCTGCCGCCCAACGTCCTGGA
CCTCCTGGAGGAGCACCGCGGCGGCCAGGCCCGCCCGGACGACGACCTCA
CCCACGCCATTGCGGAGCACTCGGCGTGGGTGCAGTACCTGCACGCCCGC
CACGCGTACGCCGGGTGGGCGGCGGTGCTGACGGAGGAGCTGCCCCTGCC
CCCCCCGCCGCCGCCTGCCGACGGAGGCCACACCCACGCCGCCCGCGCCC
GCTTCGAGCGGGACACCATTGACCACGAGGAGTTCCTGCGGGCGGCGGAG
GTGGAGGTCCGCCGCCGTGCCGCAGACGCCGCCCTCCGCCTCAACCAAGT
CCTGCAGGCGGGCGCGGACTGGCTGTCGCCCCCAGAGGCGCTGGCGCCCC
GGGGCGACGGCAACGCCGGCGCCCTGTTTGTGTCCGTGGACGTGGGCGAG
GTGCGGTCCACGTGCCTCCCCCCCGTCGCCCTCATGCTCCACGACGTCCT
GTACCGCACCGCCATGTGGTACCTGTCCCGGCCGGCGCTGGTGGCCGCCC
ACCGCCGGGACGCCTGCGACCTCCTCAAGCAAAGCCTCCAGGTGGCGGAC
GTGGTGGCGGACGAGGTCTCCCGGCTGTCGGACTTGTTCCCGCCGGCTGC
CCTGCGGGACCTCCTCACCCGCGTCAACCTCAGCGCCGCCCAGCTCCTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10901:1143..3341-

>mRNA_S-firma_F_contig10901.1204.1 ID=mRNA_S-firma_F_contig10901.1204.1|Name=mRNA_S-firma_F_contig10901.1204.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=4068bp|location=Sequence derived from alignment at S-firma_F_contig10901:1143..3341- (Sphaerotrichia firma ET2_F female)
GGCCTGGTGAGCACCCTGGACCCCGACGCGCCCCTGCGGGAGCCCGCCGC
GCACCTGGTGTCCGAGGACACGGCGGCGGAGGCGGACTTGCTGCTGAGCC
TGTGGCAGCTGCTGCGGTGCGGCCTCATTGCCCAAGCCCGCAACCTGTGC
GAGCAGTACGGGCACCCGTGGCGGGCGGCCTTCCTCTCCGGCGGCTTCCT
GTGGCAGGACGCCGCCGCCGGCCCCACGGCGCAGGGCGTCGTGGAGCGGG
GCGGGAACCCGTTTTCGCTGCTGTGGAAGTGGGTGTGCTGGCAGGCTGGG
GAGAAGGCCGCCCAGGCGCCGGCGCAGGCGACGTCCTCCACCGCCCGCCG
GGTGGCGGCGACGGAGCACGCGCTGTACGCGCTGCTGGGCGGGCACGCCA
CCCAGTTGCTCAAGTCCCCCCTGGTGCACACCTGGGACGACGCCGTGTGG
GCGCTGTGTGTGTGCGCCCGGGAGGCCCGGCTTGCCCGCAAGGTGGCCGC
CGTGCGGCAAGCCCAGCTGGAGGAGACGGCCCACGTGCCCGTGGCGGCCT
CCGACGGCGGCGCGGGGGCGACGACGGCCCTGCTTGCCGCCCTGGACGGC
GGCGAGTTCGCGCTGTCCCGGGTGTCGGCCGGCGGCGTGTGGGGCCACCT
GCGGGAGTCTGCCCTGCTGGGGGACGGCGCCAAGGCCGGCGGCAGCCTGC
CCTTTGCCGCCATTCAGGAGCGCCTGGTGCAGGCGGCGGAGGGCGGCCCC
GGCGCCGCGGACCAGGTGGTTGTGCAGCTGCGCGCCCTCGTGGGCGCCCT
GGCGGCGCCGTCCGCGGGTGGCGTGCCGCAGGCGGCGGTGCGGCTGCCCA
CCGCCCCCCTCCCGGCGGAAGCGCTGTCATTTTGCCGGTTCGCGGCGCAC
TACGCCGTCCTGCACATGCCGGAGGGCGAGCCCCTGGTGGCCGCCTGCCG
GGAGGTGGTGCTCGTGTACGCCTCCCACCTCATGGCCACCCTGCAGGTGG
ACAAGGTGGCCCGCTTCGTGTGCCACTGCGGCCCCGCCCGCGTCCACGAA
TACGTCAAGTTCCTGCACCTGGTGGTGGACGCCCCCCAGCGGGCGCTGGC
CGTCACGGAGGCCCACCAGTGGATGGCGTCCGACCTCCGCGCCGTGCTCA
GCCTGACGGTGGAGTCCCTGGCGCGGCTCCAGGGGGGGGGCGCCGGTGGC
GTCGCGGCCTGGTGAGCACCCTGGACCCCGACGCGCCCCTGCGGGAGCCC
GCCGCGCACCTGGTGTCCGAGGACACGGCGGCGGAGGCGGACTTGCTGCT
GAGCCTGTGGCAGCTGCTGCGGTGCGGCCTCATTGCCCAAGCCCGCAACC
TGTGCGAGCAGTACGGGCACCCGTGGCGGGCGGCCTTCCTCTCCGGCGGC
TTCCTGTGGCAGGACGCCGCCGCCGGCCCCACGGCGCAGGGCGTCGTGGA
GCGGGGCGGGAACCCGTTTTCGCTGCTGTGGAAGTGGGTGTGCTGGCAGG
CTGGGGAGAAGGCCGCCCAGGCGCCGGCGCAGGCGACGTCCTCCACCGCC
CGCCGGGTGGCGGCGACGGAGCACGCGCTGTACGCGCTGCTGGGCGGGCA
CGCCACCCAGTTGCTCAAGTCCCCCCTGGTGCACACCTGGGACGACGCCG
TGTGGGCGCTGTGTGTGTGCGCCCGGGAGGCCCGGCTTGCCCGCAAGGTG
GCCGCCGTGCGGCAAGCCCAGCTGGAGGAGACGGCCCACGTGCCCGTGGC
GGCCTCCGACGGCGGCGCGGGGGCGACGACGGCCCTGCTTGCCGCCCTGG
ACGGCGGCGAGTTCGCGCTGTCCCGGGTGTCGGCCGGCGGCGTGTGGGGC
CACCTGCGGGAGTCTGCCCTGCTGGGGGACGGCGCCAAGGCCGGCGGCAG
CCTGCCCTTTGCCGCCATTCAGGAGCGCCTGGTGCAGGCGGCGGAGGGCG
GCCCCGGCGCCGCGGACCAGGTGGTTGTGCAGCTGCGCGCCCTCGTGGGC
GCCCTGGCGGCGCCGTCCGCGGGTGGCGTGCCGCAGGCGGCGGTGCGGCT
GCCCACCGCCCCCCTCCCGGCGGAAGCGCTGTCATTTTGCCGGTTCGCGG
CGCACTACGCCGTCCTGCACATGCCGGAGGGCGAGCCCCTGGTGGCCGCC
TGCCGGGAGGTGGTGCTCGTGTACGCCTCCCACCTCATGGCCACCCTGCA
GGTGGACAAGGTGGCCCGCTTCGTGTGCCACTGCGGCCCCGCCCGCGTCC
ACGAATACGTCAAGTTCCTGCACCTGGTGGTGGACGCCCCCCAGCGGGCG
CTGGCCGTCACGGAGGCCCACCAGTGGATGGCGTCCGACCTCCGCGCCGT
GCTCAGCCTGACGGTGGAGTCCCTGGCGCGGCTCCAGGGGGGGGGCGCCG
GTGGCGTCGCCCGCCTGATGGCCATCAAGTGGCTCCTGCAGCCCAGCACA
CCGCAGTTCCTGGGGGACGCCGTCGCCGCCGCCAACGCCCTCATGCGGTT
CCTCATGACGGAGCCGTCGCCGTCGCGCCTTGTGCGGTCGCTGTCCGCGC
CGCAGCAGGCGGCTGCCGGCGGCGGCAACCTCGGCGCCGCCACCCTGCTG
CTGGTGGGGTCCCCAGCGGACCGCCTGCCGCCCATCCTGCCGCCCAACGT
CCTGGACCTCCTGGAGGAGCACCGCGGCGGCCAGGCCCGCCCGGACGACG
ACCTCACCCACGCCATTGCGGAGCACTCGGCGTGGGTGCAGTACCTGCAC
GCCCGCCACGCGTACGCCGGGTGGGCGGCGGTGCTGACGGAGGAGCTGCC
CCTGCCCCCCCCGCCGCCGCCTGCCGACGGAGGCCACACCCACGCCGCCC
GCGCCCGCTTCGAGCGGGACACCATTGACCACGAGGAGTTCCTGCGGGCG
GCGGAGGTGGAGGTCCGCCGCCGTGCCGCAGACGCCGCCCTCCGCCTCAA
CCAAGTCCTGCAGGCGGGCGCGGACTGGCTGTCGCCCCCAGAGGCGCTGG
CGCCCCGGGGCGACGGCAACGCCGGCGCCCTGTTTGTGTCCGTGGACGTG
GGCGAGGTGCGGTCCACGTGCCTCCCCCCCGTCGCCCTCATGCTCCACGA
CGTCCTGTACCGCACCGCCATGTGCCGCCTGATGGCCATCAAGTGGCTCC
TGCAGCCCAGCACACCGCAGTTCCTGGGGGACGCCGTCGCCGCCGCCAAC
GCCCTCATGCGGTTCCTCATGACGGAGCCGTCGCCGTCGCGCCTTGTGCG
GTCGCTGTCCGCGCCGCAGCAGGCGGCTGCCGGCGGCGGCAACCTCGGCG
CCGCCACCCTGCTGCTGGTGGGGTCCCCAGCGGACCGCCTGCCGCCCATC
CTGCCGCCCAACGTCCTGGACCTCCTGGAGGAGCACCGCGGCGGCCAGGC
CCGCCCGGACGACGACCTCACCCACGCCATTGCGGAGCACTCGGCGTGGG
TGCAGTACCTGCACGCCCGCCACGCGTACGCCGGGTGGGCGGCGGTGCTG
ACGGAGGAGCTGCCCCTGCCCCCCCCGCCGCCGCCTGCCGACGGAGGCCA
CACCCACGCCGCCCGCGCCCGCTTCGAGCGGGACACCATTGACCACGAGG
AGTTCCTGCGGGCGGCGGAGGTGGAGGTCCGCCGCCGTGCCGCAGACGCC
GCCCTCCGCCTCAACCAAGTCCTGCAGGCGGGCGCGGACTGGCTGTCGCC
CCCAGAGGCGCTGGCGCCCCGGGGCGACGGCAACGCCGGCGCCCTGTTTG
TGTCCGTGGACGTGGGCGAGGTGCGGTCCACGTGCCTCCCCCCCGTCGCC
CTCATGCTCCACGACGTCCTGTACCGCACCGCCATGTGCCTCCAGGTGGC
GGACGTGGTGGCGGACGAGGTCTCCCGGCTGTCGGACTTGTTCCCGCCGG
CTGCCCTGCGGGACCTCCTCACCCGCGTCAACCTCAGCGCCGCCCAGCTC
CTGCCTCCAGGTGGCGGACGTGGTGGCGGACGAGGTCTCCCGGCTGTCGG
ACTTGTTCCCGCCGGCTGCCCTGCGGGACCTCCTCACCCGCGTCAACCTC
AGCGCCGCCCAGCTCCTG
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