mRNA_S-firma_F_contig1089.1181.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1089.1181.1
Unique NamemRNA_S-firma_F_contig1089.1181.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1089.1181.1 vs. uniprot
Match: A0A6H5KE32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE32_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.480e-10
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   13 SSSRCYHVGCPKRPTYGIDLSRRRESCAEHARPGMVNIDLT 135
            +++ C + GCPKRPTYGI+ SRRRE CA HA PGMVNIDLT
Sbjct:   28 ATTSCRYPGCPKRPTYGIEASRRRECCAVHALPGMVNIDLT 68
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BLAST of mRNA_S-firma_F_contig1089.1181.1 vs. uniprot
Match: D7FWU8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU8_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 5.470e-9
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   13 SSSRCYHVGCPKRPTYGIDLSRRRESCAEHARPGMVNIDLT 135
            SS +C H GC KRPTYG++ SR+RE C++HARP MVNIDLT
Sbjct:   52 SSGKCLHPGCSKRPTYGVEASRKRECCSQHARPWMVNIDLT 92
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BLAST of mRNA_S-firma_F_contig1089.1181.1 vs. uniprot
Match: A0A6H5KFP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP4_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.790e-8
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   13 SSSRCYHVGCPKRPTYGIDLSRRRESCAEHARPGMVNIDLT 135
            SS +C + GC KRPTYG++ SR+RE C++HARP MVNIDLT
Sbjct:    3 SSGKCLYSGCSKRPTYGVEASRKRECCSQHARPWMVNIDLT 43
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1089.1181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KE32_9PHAE1.480e-1070.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWU8_ECTSI5.470e-968.29EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KFP4_9PHAE5.790e-865.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1089contigS-firma_F_contig1089:18040..19771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G985
Max annot lvl2880.D7G985|-
Evalue0.000229
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Model size1305
Cds size1305
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1089.1181.1prot_S-firma_F_contig1089.1181.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1089 18040..19771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.5010664-CDS-S-firma_F_contig1089:18039..181761622815632.5010664-CDS-S-firma_F_contig1089:18039..18176Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1089 18040..18176 +
1696949467.3369157-CDS-S-firma_F_contig1089:18039..181761696949467.3369157-CDS-S-firma_F_contig1089:18039..18176Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1089 18040..18176 +
1622815632.5122952-CDS-S-firma_F_contig1089:18477..192201622815632.5122952-CDS-S-firma_F_contig1089:18477..19220Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1089 18478..19220 +
1696949467.3501458-CDS-S-firma_F_contig1089:18477..192201696949467.3501458-CDS-S-firma_F_contig1089:18477..19220Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1089 18478..19220 +
1622815632.5241582-CDS-S-firma_F_contig1089:19346..197711622815632.5241582-CDS-S-firma_F_contig1089:19346..19771Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1089 19347..19771 +
1696949467.3665578-CDS-S-firma_F_contig1089:19346..197711696949467.3665578-CDS-S-firma_F_contig1089:19346..19771Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1089 19347..19771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1089.1181.1

>prot_S-firma_F_contig1089.1181.1 ID=prot_S-firma_F_contig1089.1181.1|Name=mRNA_S-firma_F_contig1089.1181.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=435bp
MQSPSSSRCYHVGCPKRPTYGIDLSRRRESCAEHARPGMVNIDLTRCAKP
NCETRATFGDPVSGRRKFCSKHAPPGMLNVERKKCARENCHMPPAYWHPE
NRKRRCCIEHAEEGMVKLDKKLCPFKGCFTSASYGVPGEKRKFCAAHAQP
GMVSIGGRRCAAEDCTKRANYGVEGTRNRQFCAEHAKAGMVNINNQKPPA
AMIIRRKAGGTAETASPRKKNGGSTGGGLISGGLVGGGSPGSTASTTTSS
FDAGNVGFPPESAVSSHSNMNGNGSRWHLGADVAGAYLGAGGVEDAGTGG
RGGGGGVGVERGPPTRAENRARSSEAGIGEAGSGRAGFEEREISDKKRKP
GGMVASSPRKGKQVRPPGAPEEDEEEEEEEVEEEEDEGATSSSSSAALPG
RSRILLPWPKSKAAPPLLLTSEGWSTWEWRPVEV*
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mRNA from alignment at S-firma_F_contig1089:18040..19771+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1089.1181.1 ID=mRNA_S-firma_F_contig1089.1181.1|Name=mRNA_S-firma_F_contig1089.1181.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1732bp|location=Sequence derived from alignment at S-firma_F_contig1089:18040..19771+ (Sphaerotrichia firma ET2_F female)
ATGCAATCCCCTTCGAGCTCGAGATGCTACCACGTGGGCTGCCCGAAGAG
GCCGACGTACGGAATCGACTTGAGCCGAAGGAGGGAGAGCTGCGCTGAGC
ACGCCCGACCAGGGATGGTGAACATCGATCTCACCAGGTGCGTACTCCCC
TCAACTGTTTTACAGAGTAGTGATGTAGTGCTACTGGTCGTGGCGGTGTC
CAGTTTTTCATGTCCTCGTGATGTCTGCAGCATTTCACTTGCTTCATCGT
CCTCTCCGAGTGAAACTTTCATTTCCTGAACTCTGTGTTCGTTTGCGGGC
TTCCCTTGCCTCCCTTTGAGGGCGGCTTGCCGTTTCCTGTTTGTCGTATT
GTCGCCCACACCAACGTTATACTCCGAGTGTTAATTCCATCGGCGTCTCC
CCCCCCCCCCCATGAATGACTTGTTGTCGCCCCCGAAGGTGCGCCAAGCC
GAACTGCGAGACTCGTGCTACCTTCGGCGACCCGGTGAGTGGGCGGAGGA
AGTTCTGCAGCAAGCACGCGCCACCGGGCATGCTCAACGTCGAGCGCAAG
AAGTGCGCCCGCGAGAACTGCCACATGCCGCCGGCCTACTGGCACCCGGA
GAACCGGAAGCGGCGGTGCTGCATCGAGCACGCGGAGGAGGGTATGGTCA
AGCTCGACAAGAAGCTGTGCCCGTTCAAGGGCTGCTTCACGTCCGCCTCG
TACGGCGTCCCTGGGGAGAAGAGGAAGTTCTGCGCCGCCCACGCTCAGCC
GGGCATGGTGTCGATCGGGGGGCGCAGGTGCGCGGCGGAGGACTGCACCA
AGCGCGCCAACTACGGCGTGGAGGGCACCCGCAACAGGCAGTTCTGCGCG
GAGCACGCGAAGGCCGGGATGGTGAACATCAACAACCAGAAGCCCCCCGC
CGCCATGATCATCAGGAGGAAGGCCGGCGGGACAGCCGAGACGGCCTCCC
CGAGGAAGAAGAACGGCGGCAGCACCGGTGGCGGCCTGATCAGCGGCGGC
CTTGTCGGCGGCGGCAGCCCTGGAAGCACCGCCAGCACCACCACCAGCAG
CTTCGACGCCGGCAACGTCGGCTTTCCTCCGGAATCGGCGGTATCGTCCC
ACTCCAACATGAACGGCAACGGAAGTCGGTGGCACCTGGGAGCCGATGTC
GCCGGAGCGTACCTCGGAGCGGGCGGCGTAGGTGGCGGCAGCCGCTACGC
CTACCGCACGGAGCGACTTCTACCCGCCGACGGAAGCTATCGCCACTATG
CACCGGCCACGGCTGAGCATGCGGGTATGCGGGCGCTGAGCCTCGCCGCG
TTTAGAGAGGATGCTGGCACCGGCGGGCGGGGCGGCGGCGGCGGTGTTGG
AGTCGAGCGTGGCCCTCCTACCCGCGCCGAGAACAGGGCCCGGTCGAGCG
AGGCCGGCATCGGCGAGGCCGGCAGCGGTCGGGCGGGGTTTGAGGAGAGG
GAAATTTCTGACAAAAAGAGGAAGCCCGGAGGTATGGTCGCGTCTTCGCC
CCGCAAGGGGAAGCAGGTTAGGCCGCCGGGGGCGCCAGAGGAGGACGAAG
AAGAAGAGGAGGAGGAGGTGGAGGAAGAGGAAGACGAGGGAGCAACCTCT
TCCTCGAGCAGTGCTGCGCTGCCGGGGCGATCGAGGATTCTGCTGCCGTG
GCCAAAGAGCAAGGCGGCTCCCCCGCTCCTGCTCACCTCGGAAGGGTGGT
CGACTTGGGAGTGGCGCCCGGTGGAAGTATGA
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Coding sequence (CDS) from alignment at S-firma_F_contig1089:18040..19771+

>mRNA_S-firma_F_contig1089.1181.1 ID=mRNA_S-firma_F_contig1089.1181.1|Name=mRNA_S-firma_F_contig1089.1181.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2610bp|location=Sequence derived from alignment at S-firma_F_contig1089:18040..19771+ (Sphaerotrichia firma ET2_F female)
ATGCAATCCCCTTCGAGCTCGAGATGCTACCACGTGGGCTGCCCGAAGAG
GCCGACGTACGGAATCGACTTGAGCCGAAGGAGGGAGAGCTGCGCTGAGC
ACGCCCGACCAGGGATGGTGAACATCGATCTCACCAGATGCAATCCCCTT
CGAGCTCGAGATGCTACCACGTGGGCTGCCCGAAGAGGCCGACGTACGGA
ATCGACTTGAGCCGAAGGAGGGAGAGCTGCGCTGAGCACGCCCGACCAGG
GATGGTGAACATCGATCTCACCAGGTGCGCCAAGCCGAACTGCGAGACTC
GTGCTACCTTCGGCGACCCGGTGAGTGGGCGGAGGAAGTTCTGCAGCAAG
CACGCGCCACCGGGCATGCTCAACGTCGAGCGCAAGAAGTGCGCCCGCGA
GAACTGCCACATGCCGCCGGCCTACTGGCACCCGGAGAACCGGAAGCGGC
GGTGCTGCATCGAGCACGCGGAGGAGGGTATGGTCAAGCTCGACAAGAAG
CTGTGCCCGTTCAAGGGCTGCTTCACGTCCGCCTCGTACGGCGTCCCTGG
GGAGAAGAGGAAGTTCTGCGCCGCCCACGCTCAGCCGGGCATGGTGTCGA
TCGGGGGGCGCAGGTGCGCGGCGGAGGACTGCACCAAGCGCGCCAACTAC
GGCGTGGAGGGCACCCGCAACAGGCAGTTCTGCGCGGAGCACGCGAAGGC
CGGGATGGTGAACATCAACAACCAGAAGCCCCCCGCCGCCATGATCATCA
GGAGGAAGGCCGGCGGGACAGCCGAGACGGCCTCCCCGAGGAAGAAGAAC
GGCGGCAGCACCGGTGGCGGCCTGATCAGCGGCGGCCTTGTCGGCGGCGG
CAGCCCTGGAAGCACCGCCAGCACCACCACCAGCAGCTTCGACGCCGGCA
ACGTCGGCTTTCCTCCGGAATCGGCGGTATCGTCCCACTCCAACATGAAC
GGCAACGGAAGTCGGTGGCACCTGGGAGCCGATGTCGCCGGAGCGTACCT
CGGAGCGGGCGGCGTAGGTGCGCCAAGCCGAACTGCGAGACTCGTGCTAC
CTTCGGCGACCCGGTGAGTGGGCGGAGGAAGTTCTGCAGCAAGCACGCGC
CACCGGGCATGCTCAACGTCGAGCGCAAGAAGTGCGCCCGCGAGAACTGC
CACATGCCGCCGGCCTACTGGCACCCGGAGAACCGGAAGCGGCGGTGCTG
CATCGAGCACGCGGAGGAGGGTATGGTCAAGCTCGACAAGAAGCTGTGCC
CGTTCAAGGGCTGCTTCACGTCCGCCTCGTACGGCGTCCCTGGGGAGAAG
AGGAAGTTCTGCGCCGCCCACGCTCAGCCGGGCATGGTGTCGATCGGGGG
GCGCAGGTGCGCGGCGGAGGACTGCACCAAGCGCGCCAACTACGGCGTGG
AGGGCACCCGCAACAGGCAGTTCTGCGCGGAGCACGCGAAGGCCGGGATG
GTGAACATCAACAACCAGAAGCCCCCCGCCGCCATGATCATCAGGAGGAA
GGCCGGCGGGACAGCCGAGACGGCCTCCCCGAGGAAGAAGAACGGCGGCA
GCACCGGTGGCGGCCTGATCAGCGGCGGCCTTGTCGGCGGCGGCAGCCCT
GGAAGCACCGCCAGCACCACCACCAGCAGCTTCGACGCCGGCAACGTCGG
CTTTCCTCCGGAATCGGCGGTATCGTCCCACTCCAACATGAACGGCAACG
GAAGTCGGTGGCACCTGGGAGCCGATGTCGCCGGAGCGTACCTCGGAGCG
GGCGGCGTAGAGGATGCTGGCACCGGCGGGCGGGGCGGCGGCGGCGGTGT
TGGAGTCGAGCGTGGCCCTCCTACCCGCGCCGAGAACAGGGCCCGGTCGA
GCGAGGCCGGCATCGGCGAGGCCGGCAGCGGTCGGGCGGGGTTTGAGGAG
AGGGAAATTTCTGACAAAAAGAGGAAGCCCGGAGGTATGGTCGCGTCTTC
GCCCCGCAAGGGGAAGCAGGTTAGGCCGCCGGGGGCGCCAGAGGAGGACG
AAGAAGAAGAGGAGGAGGAGGTGGAGGAAGAGGAAGACGAGGGAGCAACC
TCTTCCTCGAGCAGTGCTGCGCTGCCGGGGCGATCGAGGATTCTGCTGCC
GTGGCCAAAGAGCAAGGCGGCTCCCCCGCTCCTGCTCACCTCGGAAGGGT
GGTCGACTTGGGAGTGGCGCCCGGTGGAAGTATGAAGGATGCTGGCACCG
GCGGGCGGGGCGGCGGCGGCGGTGTTGGAGTCGAGCGTGGCCCTCCTACC
CGCGCCGAGAACAGGGCCCGGTCGAGCGAGGCCGGCATCGGCGAGGCCGG
CAGCGGTCGGGCGGGGTTTGAGGAGAGGGAAATTTCTGACAAAAAGAGGA
AGCCCGGAGGTATGGTCGCGTCTTCGCCCCGCAAGGGGAAGCAGGTTAGG
CCGCCGGGGGCGCCAGAGGAGGACGAAGAAGAAGAGGAGGAGGAGGTGGA
GGAAGAGGAAGACGAGGGAGCAACCTCTTCCTCGAGCAGTGCTGCGCTGC
CGGGGCGATCGAGGATTCTGCTGCCGTGGCCAAAGAGCAAGGCGGCTCCC
CCGCTCCTGCTCACCTCGGAAGGGTGGTCGACTTGGGAGTGGCGCCCGGT
GGAAGTATGA
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