mRNA_S-firma_F_contig10880.1171.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10880.1171.1
Unique NamemRNA_S-firma_F_contig10880.1171.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10880.1171.1 vs. uniprot
Match: D7G7E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E7_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.250e-26
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:  319 KVLVRLRHVYGHDAELYDEFSRELLSPLLRLVPSALSSPEAVRLSSTVVVSLRENCAACLFRE 507
            +VLVRLRHVY HDAELY+EFSRELLSP+LRLVPSALSS +AVRLSS VVVSLRENC ACL R+
Sbjct:   34 EVLVRLRHVYDHDAELYEEFSRELLSPVLRLVPSALSSLDAVRLSSRVVVSLRENCVACLVRK 96
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10880.1171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7E7_ECTSI2.250e-2684.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10880contigS-firma_F_contig10880:457..1777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size510
Cds size510
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10880.1171.1prot_S-firma_F_contig10880.1171.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10880 457..1777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.829635-CDS-S-firma_F_contig10880:456..6451622815631.829635-CDS-S-firma_F_contig10880:456..645Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10880 457..645 -
1696949466.8908224-CDS-S-firma_F_contig10880:456..6451696949466.8908224-CDS-S-firma_F_contig10880:456..645Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10880 457..645 -
1622815631.842818-CDS-S-firma_F_contig10880:1127..12461622815631.842818-CDS-S-firma_F_contig10880:1127..1246Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10880 1128..1246 -
1696949466.9249544-CDS-S-firma_F_contig10880:1127..12461696949466.9249544-CDS-S-firma_F_contig10880:1127..1246Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10880 1128..1246 -
1622815631.852904-CDS-S-firma_F_contig10880:1575..17771622815631.852904-CDS-S-firma_F_contig10880:1575..1777Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10880 1576..1777 -
1696949466.9401445-CDS-S-firma_F_contig10880:1575..17771696949466.9401445-CDS-S-firma_F_contig10880:1575..1777Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10880 1576..1777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10880.1171.1

>prot_S-firma_F_contig10880.1171.1 ID=prot_S-firma_F_contig10880.1171.1|Name=mRNA_S-firma_F_contig10880.1171.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=170bp
QSRLSALGFGRDLSSGGGGGGGGGLSMWDTDPMGGDDDEEDGEGGQGYVP
VWHGAAGGGGGGGGGGRGNGGEDEDQEHDDDEQEEEEEEEEEEEDAESAD
KFPPDGKVLVRLRHVYGHDAELYDEFSRELLSPLLRLVPSALSSPEAVRL
SSTVVVSLRENCAACLFREV
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mRNA from alignment at S-firma_F_contig10880:457..1777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10880.1171.1 ID=mRNA_S-firma_F_contig10880.1171.1|Name=mRNA_S-firma_F_contig10880.1171.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1321bp|location=Sequence derived from alignment at S-firma_F_contig10880:457..1777- (Sphaerotrichia firma ET2_F female)
CAGTCGAGATTGTCCGCTCTGGGCTTCGGACGGGACCTCTCCAGCGGCGG
CGGCGGCGGCGGAGGCGGAGGGTTGTCGATGTGGGACACTGACCCTATGG
GCGGGGACGACGACGAAGAGGACGGCGAGGGTGGGCAGGGCTATGTCCCG
GTGTGGCACGGGGCCGCTGGAGGCGGCGGCGGTGGCGGCGGCGGCGGGAG
AGGTGAGCTTGGGCGTTTTTTTTCTCCTTGGCTTGTTTTTGAGGCTTTAG
AGTCGTGAGTTTTCTAAGAAAGCTCCTCGTTGTGTAGACGTGAGGCTCTC
GGTTGGTGTTTTTTTCGTTTTTTTTCTGAGAAAACTCTTCGTTTTGTTGA
CAAAGTCGGGTTTGAAATTCGTTTTCCCCGCGTTTGGGAGAGCTACAACA
CGGTATACTCCCATCCTACTCTGTACGGACCCTCCTTCAGATAACACCCC
CCACACTCCATGGAGCCCCTTCAATGACATCCCATCCTACGACGCCCCCT
AATCCATCCTACGGGCCCCCCTCAGGCGGAGGCAACGGCGGCGAGGACGA
GGATCAGGAACACGATGACGACGAGCAGGAGGAGGAAGAAGAGGAAGAGG
AGGAGGAGGAAGACGCAGAGAGCGCAGACAAGTTTCCTCCGGACGGCAAG
GTGTGTGCTCTTCTTACAAAAAAAAAAAAACGAGATTTTTGCAGTGGAAA
TCGAACTTGGGATATTTGTTTGCGTTTCCAACAGCATTTTTTCGTTTTTC
CTCCCAAAACCGCTCGAACCCCGAAAACAAATAAAAACCAAGAAAATTGC
GTGGACGGACAACACCAGGAGCGAGAAAACGGGATTTTGGTGCAACACCG
TGTGTGGTGCGCTGCATGCAAGCAACCACGGAGACATGCTTGGCGCGGTA
GAGGGACCACGAACCCCAACCATTGTGTGCACGCGCACCACGCCCCCCCC
ATCCCTATTTTCTGGGTTTTCCGGTTTTCTTCTCTCTTTCTCTTTCTCTT
TTGGCTGTTTGTTTGTTGCCTTGAGCGTTCAATCTGTCTCTCGCCGCCGC
CGTCGTGTTTTTTGAAAGACAAAACTTTAAATGAAGAATCTAAAGTCGTC
GACACGCGACACGCCGTGTCCCACCAAACCAGGTGCTCGTGCGGCTGCGG
CACGTGTACGGGCACGACGCGGAGCTGTACGACGAGTTCTCCCGGGAGCT
GCTGTCGCCGCTGCTGCGCCTCGTGCCCTCAGCGCTGTCGTCCCCGGAGG
CGGTGCGGCTGTCGTCGACGGTGGTGGTGTCGCTCCGAGAGAACTGCGCC
GCCTGCCTGTTCCGCGAGGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10880:457..1777-

>mRNA_S-firma_F_contig10880.1171.1 ID=mRNA_S-firma_F_contig10880.1171.1|Name=mRNA_S-firma_F_contig10880.1171.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1020bp|location=Sequence derived from alignment at S-firma_F_contig10880:457..1777- (Sphaerotrichia firma ET2_F female)
CAGTCGAGATTGTCCGCTCTGGGCTTCGGACGGGACCTCTCCAGCGGCGG
CGGCGGCGGCGGAGGCGGAGGGTTGTCGATGTGGGACACTGACCCTATGG
GCGGGGACGACGACGAAGAGGACGGCGAGGGTGGGCAGGGCTATGTCCCG
GTGTGGCACGGGGCCGCTGGAGGCGGCGGCGGTGGCGGCGGCGGCGGGAG
AGCAGTCGAGATTGTCCGCTCTGGGCTTCGGACGGGACCTCTCCAGCGGC
GGCGGCGGCGGCGGAGGCGGAGGGTTGTCGATGTGGGACACTGACCCTAT
GGGCGGGGACGACGACGAAGAGGACGGCGAGGGTGGGCAGGGCTATGTCC
CGGTGTGGCACGGGGCCGCTGGAGGCGGCGGCGGTGGCGGCGGCGGCGGG
AGAGGCAACGGCGGCGAGGACGAGGATCAGGAACACGATGACGACGAGCA
GGAGGAGGAAGAAGAGGAAGAGGAGGAGGAGGAAGACGCAGAGAGCGCAG
ACAAGTTTCCTCCGGACGGCAAGGCAACGGCGGCGAGGACGAGGATCAGG
AACACGATGACGACGAGCAGGAGGAGGAAGAAGAGGAAGAGGAGGAGGAG
GAAGACGCAGAGAGCGCAGACAAGTTTCCTCCGGACGGCAAGGTGCTCGT
GCGGCTGCGGCACGTGTACGGGCACGACGCGGAGCTGTACGACGAGTTCT
CCCGGGAGCTGCTGTCGCCGCTGCTGCGCCTCGTGCCCTCAGCGCTGTCG
TCCCCGGAGGCGGTGCGGCTGTCGTCGACGGTGGTGGTGTCGCTCCGAGA
GAACTGCGCCGCCTGCCTGTTCCGCGAGGTGGTGCTCGTGCGGCTGCGGC
ACGTGTACGGGCACGACGCGGAGCTGTACGACGAGTTCTCCCGGGAGCTG
CTGTCGCCGCTGCTGCGCCTCGTGCCCTCAGCGCTGTCGTCCCCGGAGGC
GGTGCGGCTGTCGTCGACGGTGGTGGTGTCGCTCCGAGAGAACTGCGCCG
CCTGCCTGTTCCGCGAGGTG
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