mRNA_S-firma_F_contig10867.1155.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10867.1155.1
Unique NamemRNA_S-firma_F_contig10867.1155.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10867.1155.1 vs. uniprot
Match: A0A6H5LD80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD80_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.450e-49
Identity = 88/118 (74.58%), Postives = 100/118 (84.75%), Query Frame = 1 
Query:    1 QKRMVLSQVDLEERAKRDLDQARARRQEAADREFQRKEADDKRKAAARGRWDGVPVDRSRLLRDTKASKERALEPEDLDDLEDARASLPAHCSRIAISGRDHRVNAGRAVPAWRRGVL 354
            QKR++ SQVD+E+RA+RD+D+ARARRQE A +E  +KEA+ ++KAAA GRW GV  DRSRLLR TKASKER LEPEDLDDLED RASLPAHCS IAISGRD R N GRAVPAWRRG L
Sbjct:   71 QKRIMFSQVDIEDRARRDVDRARARRQEVALKELHQKEAEQRKKAAACGRWVGVEADRSRLLRGTKASKERMLEPEDLDDLEDRRASLPAHCSPIAISGRDLRFNQGRAVPAWRRGCL 188
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10867.1155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LD80_9PHAE2.450e-4974.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10867contigS-firma_F_contig10867:2232..3000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_001250.1
Exons2
Model size357
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10867.1155.1prot_S-firma_F_contig10867.1155.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10867 2241..3000 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.374775-UTR-S-firma_F_contig10867:2231..22401622815630.374775-UTR-S-firma_F_contig10867:2231..2240Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10867 2232..2240 +
1696949465.814697-UTR-S-firma_F_contig10867:2231..22401696949465.814697-UTR-S-firma_F_contig10867:2231..2240Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10867 2232..2240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.388633-CDS-S-firma_F_contig10867:2240..24291622815630.388633-CDS-S-firma_F_contig10867:2240..2429Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10867 2241..2429 +
1696949465.8234005-CDS-S-firma_F_contig10867:2240..24291696949465.8234005-CDS-S-firma_F_contig10867:2240..2429Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10867 2241..2429 +
1622815630.3991206-CDS-S-firma_F_contig10867:2841..30001622815630.3991206-CDS-S-firma_F_contig10867:2841..3000Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10867 2842..3000 +
1696949465.8316472-CDS-S-firma_F_contig10867:2841..30001696949465.8316472-CDS-S-firma_F_contig10867:2841..3000Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10867 2842..3000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10867.1155.1

>prot_S-firma_F_contig10867.1155.1 ID=prot_S-firma_F_contig10867.1155.1|Name=mRNA_S-firma_F_contig10867.1155.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=116bp
MVLSQVDLEERAKRDLDQARARRQEAADREFQRKEADDKRKAAARGRWDG
VPVDRSRLLRDTKASKERALEPEDLDDLEDARASLPAHCSRIAISGRDHR
VNAGRAVPAWRRGVL*
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mRNA from alignment at S-firma_F_contig10867:2232..3000+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10867.1155.1 ID=mRNA_S-firma_F_contig10867.1155.1|Name=mRNA_S-firma_F_contig10867.1155.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=769bp|location=Sequence derived from alignment at S-firma_F_contig10867:2232..3000+ (Sphaerotrichia firma ET2_F female)
CAGAAGAGGATGGTGCTGTCGCAAGTCGACCTCGAGGAGCGCGCCAAGAG
AGACCTAGACCAGGCCCGGGCACGCCGCCAAGAGGCCGCCGACAGGGAGT
TCCAGCGCAAGGAGGCCGACGACAAGAGGAAAGCGGCGGCCAGGGGGAGG
TGGGATGGGGTCCCCGTGGATCGATCCAGGCTCCTCCGGGACACCAAGGT
GTGGAGGGTGTGTTCGTTTGTCGGCAATGAGAATGAAAATGGCGTGGATA
GGAATGCGCGCGATTTGTTTTGGGGTGCAAAGAGAGGCCCCGCAAGGTGG
TGTTGGGGGGGGGGAGGGGGCTCCGGGGCTCGCGGGGTTGGGGTTTTGTT
GCTGCTGTTGGAGCTGTCGGGCATGTTCCCACCCCACCCCTTTTTATTTT
TCGTTTTTTCTCATTTTCTTGGCCTGTTCGCAGCCTCTGCTTCTCCTTCT
CATGGCGTTTTTTTTCCTCTCGAGGCCTGGAAGGACGAAAAAACCCCCAA
AAAAACCCGGCTCTCTCTCTCTCTCTCGGCCACAAAAAAACGACTCCTCA
CGAACAGAACCGCCAACGCCGCGCTGCTCGTGTCCTCTGTTCCGCTCGTC
TGTCCCCAAGGCCTCCAAGGAGAGGGCGCTCGAGCCCGAGGACCTGGATG
ACCTGGAGGACGCACGGGCGAGCCTCCCGGCCCACTGCTCCCGCATCGCC
ATCAGCGGGCGCGACCATCGGGTTAACGCTGGTCGCGCCGTCCCAGCCTG
GCGCCGCGGTGTTCTCTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10867:2232..3000+

>mRNA_S-firma_F_contig10867.1155.1 ID=mRNA_S-firma_F_contig10867.1155.1|Name=mRNA_S-firma_F_contig10867.1155.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=696bp|location=Sequence derived from alignment at S-firma_F_contig10867:2232..3000+ (Sphaerotrichia firma ET2_F female)
ATGGTGCTGTCGCAAGTCGACCTCGAGGAGCGCGCCAAGAGAGACCTAGA
CCAGGCCCGGGCACGCCGCCAAGAGGCCGCCGACAGGGAGTTCCAGCGCA
AGGAGGCCGACGACAAGAGGAAAGCGGCGGCCAGGGGGAGGTGGGATGGG
GTCCCCGTGGATCGATCCAGGCTCCTCCGGGACACCAAGATGGTGCTGTC
GCAAGTCGACCTCGAGGAGCGCGCCAAGAGAGACCTAGACCAGGCCCGGG
CACGCCGCCAAGAGGCCGCCGACAGGGAGTTCCAGCGCAAGGAGGCCGAC
GACAAGAGGAAAGCGGCGGCCAGGGGGAGGTGGGATGGGGTCCCCGTGGA
TCGATCCAGGCTCCTCCGGGACACCAAGGCCTCCAAGGAGAGGGCGCTCG
AGCCCGAGGACCTGGATGACCTGGAGGACGCACGGGCGAGCCTCCCGGCC
CACTGCTCCCGCATCGCCATCAGCGGGCGCGACCATCGGGTTAACGCTGG
TCGCGCCGTCCCAGCCTGGCGCCGCGGTGTTCTCTGAGCCTCCAAGGAGA
GGGCGCTCGAGCCCGAGGACCTGGATGACCTGGAGGACGCACGGGCGAGC
CTCCCGGCCCACTGCTCCCGCATCGCCATCAGCGGGCGCGACCATCGGGT
TAACGCTGGTCGCGCCGTCCCAGCCTGGCGCCGCGGTGTTCTCTGA
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