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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 2891 |
| Cds size | 1854 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815628.429274-UTR-S-firma_F_contig1085:8771..8886 | 1622815628.429274-UTR-S-firma_F_contig1085:8771..8886 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1085 8772..8886 + |
| 1696949464.2618666-UTR-S-firma_F_contig1085:8771..8886 | 1696949464.2618666-UTR-S-firma_F_contig1085:8771..8886 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1085 8772..8886 + |
| 1622815628.4388914-UTR-S-firma_F_contig1085:9252..9321 | 1622815628.4388914-UTR-S-firma_F_contig1085:9252..9321 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1085 9253..9321 + |
| 1696949464.271575-UTR-S-firma_F_contig1085:9252..9321 | 1696949464.271575-UTR-S-firma_F_contig1085:9252..9321 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1085 9253..9321 + |
| 1622815628.4699576-UTR-S-firma_F_contig1085:12219..13072 | 1622815628.4699576-UTR-S-firma_F_contig1085:12219..13072 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1085 12220..13072 + |
| 1696949464.301082-UTR-S-firma_F_contig1085:12219..13072 | 1696949464.301082-UTR-S-firma_F_contig1085:12219..13072 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1085 12220..13072 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815628.448298-CDS-S-firma_F_contig1085:9321..9345 | 1622815628.448298-CDS-S-firma_F_contig1085:9321..9345 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1085 9322..9345 + |
| 1696949464.2811394-CDS-S-firma_F_contig1085:9321..9345 | 1696949464.2811394-CDS-S-firma_F_contig1085:9321..9345 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1085 9322..9345 + |
| 1622815628.459664-CDS-S-firma_F_contig1085:10389..12219 | 1622815628.459664-CDS-S-firma_F_contig1085:10389..12219 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1085 10390..12219 + |
| 1696949464.2909446-CDS-S-firma_F_contig1085:10389..12219 | 1696949464.2909446-CDS-S-firma_F_contig1085:10389..12219 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1085 10390..12219 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1085.1139.1 >prot_S-firma_F_contig1085.1139.1 ID=prot_S-firma_F_contig1085.1139.1|Name=mRNA_S-firma_F_contig1085.1139.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=618bp
MTRGGRNKEKSMGADHPELANTFCNLGADAAEANKFEEAVRYYRRALAIQ EKALGVDHPEVGNILASVGTCAGKLGKTEEADRHCRRALEIRKKTLGVGH PNLRNILLHLGNYNHQMGRFEEAEQYSRRGLAILEKTLGVDHPQAAKALF NLGVYARTAGKTEEAERYYRRALAIQEKKLGVDHPELARTLDTLGVCASE AGRMEEAERYGRRAVASHTKALGADHPQVAMTLHNLGVSAGRAGRAEEAA GYHRRALAIQEKTLGVDHPHVATSLCSLGAGAGEAGRPEEAERYYRRALK IREKKLGSEHPDVVNVMLLLGNYNNEMGRTEEAVRYRRRALAIQERTLGA DDPAVAGNLHNLGIYAREAGKTGEAEAYLRRALAIREKTQGGLEVTRCLV QLGVTLREAGRADEAEGYFRRARETGKTGEAEGYIRRALAIMREKALGAG DPDLARFLFQLGVTASEAGRGEEAKGYFQRALAIQEELVGADNPSLIAVL SALGAGVYAAGRPEEAEGYYRRALTIQMQALGFDHPDVATTLSKLGCCAR KLGLKEDAERLFRQALVITEGKLGPDHPRTVETRAELAELGKPSWNVMIA TVAVGLASFYFGWSWRS* back to topmRNA from alignment at S-firma_F_contig1085:8772..13072+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig1085.1139.1 ID=mRNA_S-firma_F_contig1085.1139.1|Name=mRNA_S-firma_F_contig1085.1139.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4301bp|location=Sequence derived from alignment at S-firma_F_contig1085:8772..13072+ (Sphaerotrichia firma ET2_F female) GTTATCCCCTATCTCCCCCTGCGCTCGGTCTTCCGATTTCTCTCTCTACA
CGGTCCAGTGCACGCGGTCAGCAACGCTCTGTGATCTCCGAAGCACACGC
AAGGAGAAACTGAAGGTGCGCCAGCCTCTCTTTGTGGCATTCGTCCGCCG
GTGTGGTCCCCTCCCCCTTCTGAACATGTCGCGCACCATCCAGTAGCAGA
GCAGGTAGCAGGTAGCACGGCGTACGCGATGCGTAGCGATCGTGGTGGCC
ACGCTGAGTGTTCTAGTGGACCAATCGCCGAGACACCTCTGGTGCCGGAG
TCGTGTTCTTTGCTGTCACCCGAACTCCCATAAACACCACAAACACACAC
ACATGCGCTGCCTTTTGTGTCGCCAGATTTGGCAACCACCGCCCTTTTGA
CCTTGCCTTGCTGACCGGCGATTTGACCTACACGCTTGTTTGTGTGCTGT
TATGCACCTCTTCACCCCACTTTTCCAACAGGCAAGAGCTGCCATCTTGG
GAGAGGCGTTGACTGAGAGAGAGTCTCACGCCAGGAGTTCAGCCACAGAG
ATGACTCGTGGCGGCAGGAACAAGGTACGCATCTTGTGTACAACCGAACA
TGTGTTGACACTTGAGACAGCCCACAGCTACGCCTGCCTAGCGTTCCCTG
GTTTTGTGTACCAACGCGGAGGGCGTCATCGTTTAACTTGGTGTACAGCA
GTACGTGCAGTCTACTGCTTTACCTGCGTACATCTAGCACTCTGTGGCAA
AAGGGATCAATAATTCGATCCGTCGACTTTCCCCCGCTAGTCCAGAAAAA
TGCCGCCCCACACCCCTGTGGTCACGATCTTAGAACAGCACATCTCATCA
CAGGACATCCCCCCGGGGCAGGCTTGAAATTCCTTGTATATCGAACAGCG
GTATCCAGAAACAGCGATTTCGAGCCGCTGCGTGAAAAAGAGCGGCGCAA
CTTGGACTTGGATTTGGGCAGCGGCTCATGCCGGGACTCTCACCACCCAG
CAAGAGCGGCTGCGGGGAGACAGAGATGTACCTAAAGCACGTCAGAGCAA
CCACCGGACCTCAGCAGTGGCGGTACCCCCCCGTGGGAATATCAGCGGCG
CTTGCCATTTCAAGCTTCTCACATCTAGCAGTATTTTGATGCTGTTCATC
TTGTGCTGATTTGAATTTGAGCAAGAGTAGGCGTCTTTCGGCAGTGTATT
ATATACACTCCGAAGACACGAAGGCAACCTCGAGGTAGCTGATGTCCGGA
GGTGTCGGTATTTTGTTTAACATGGTGGACAACGATATAGACGGCAATGT
GATTCCCTGTGGCGCACAGGCATGCCTCATGGAACGAGAAAAAAATGCCG
AGAGTACGCCATGTCACTGGTCATGCATATCTTCGAGTGGCCGCAACTAG
TGGAGGTTGTGTCAGACGACCGCGCAACCGGGTTCCTCTCCATCTATATT
GACCCAGGGGAATCGGTGCGGTAGAAAACAGAGTGTGAGTCGTCGAAATT
GTGTCTGTACTCAGGCTTCAAGTTGAAATCGAATTTCAATCTCGAGGGTG
CTCTTCAACTCCCCCCCCCCCCCGATTCTTCTCCACGGATTTCGATTTTT
CAAACGTACTCCTTTCAGGAAAAATCGATGGGCGCCGATCACCCGGAGTT
GGCCAACACCTTCTGCAACCTCGGGGCTGATGCTGCTGAGGCCAACAAGT
TCGAGGAGGCCGTGAGGTACTACCGACGTGCGCTGGCGATTCAGGAGAAA
GCGCTGGGCGTCGATCACCCGGAGGTGGGGAATATCCTTGCCAGCGTCGG
AACTTGCGCCGGCAAGTTAGGGAAGACGGAGGAGGCCGACAGGCACTGCC
GACGTGCTCTCGAAATACGGAAGAAAACGCTGGGCGTCGGCCACCCGAAC
CTTCGGAACATCCTGCTGCACCTCGGGAATTACAATCACCAGATGGGGAG
GTTCGAGGAGGCCGAGCAGTACTCCCGACGGGGGCTGGCGATCCTGGAGA
AAACGCTTGGCGTCGATCATCCGCAGGCGGCCAAGGCCCTGTTCAACCTT
GGGGTTTACGCCCGCACGGCCGGGAAGACGGAGGAGGCCGAGAGGTACTA
CCGACGGGCACTGGCGATTCAGGAGAAAAAACTGGGCGTTGATCACCCAG
AGTTGGCGAGGACCCTGGACACCCTCGGGGTTTGCGCCAGCGAGGCCGGG
AGGATGGAGGAGGCCGAGAGGTATGGTCGGCGTGCGGTCGCGAGTCACAC
GAAGGCGTTGGGCGCCGACCATCCGCAGGTGGCGATGACTCTGCACAACC
TCGGGGTGAGCGCTGGCCGGGCGGGCAGAGCAGAAGAGGCCGCGGGGTAT
CATAGACGCGCTCTCGCGATTCAGGAGAAAACGCTGGGCGTCGATCACCC
GCACGTGGCAACCAGCCTGTGCAGCCTCGGGGCTGGTGCTGGAGAGGCTG
GGAGGCCAGAGGAGGCCGAGAGGTACTATCGACGTGCTCTCAAGATCCGG
GAGAAAAAGCTGGGCTCCGAACACCCGGACGTGGTAAACGTCATGCTGCT
CCTCGGGAATTACAATAACGAGATGGGGAGGACAGAGGAGGCGGTGCGGT
ATCGTCGGCGTGCTCTCGCGATTCAGGAGCGAACGTTAGGCGCCGATGAT
CCCGCTGTGGCGGGCAACTTGCACAACCTCGGAATTTATGCTCGTGAGGC
GGGCAAGACTGGGGAGGCCGAGGCGTATCTTCGGCGCGCGCTCGCGATTC
GGGAGAAGACGCAGGGCGGTCTGGAGGTGACAAGATGCCTGGTTCAGCTC
GGGGTTACTCTTCGTGAGGCAGGAAGGGCAGACGAGGCCGAGGGGTACTT
TCGCCGCGCTCGTGAGACGGGCAAGACAGGGGAGGCCGAAGGGTATATTC
GACGAGCGCTCGCGATTATGCGGGAGAAAGCGTTGGGCGCCGGTGACCCG
GACTTGGCAAGATTCCTGTTTCAGCTCGGGGTTACCGCTAGTGAGGCGGG
GAGGGGAGAGGAGGCCAAGGGGTACTTTCAGCGCGCTCTCGCTATTCAGG
AGGAATTGGTTGGTGCTGACAATCCGAGCCTTATCGCCGTCCTTTCCGCA
CTCGGGGCTGGTGTTTACGCGGCAGGGAGGCCGGAGGAGGCTGAGGGCTA
CTACCGGCGTGCTCTTACGATTCAGATGCAAGCGTTGGGTTTCGATCACC
CGGACGTGGCAACGACCCTTTCCAAGCTCGGGTGTTGCGCACGAAAGCTA
GGGCTAAAGGAGGACGCCGAGAGGTTGTTTCGGCAAGCGCTTGTCATCAC
GGAGGGCAAGCTTGGTCCTGATCACCCACGGACGGTGGAAACGCGTGCGG
AGCTAGCAGAACTAGGCAAGCCCAGCTGGAATGTCATGATCGCAACGGTT
GCTGTCGGTCTGGCGAGTTTTTATTTCGGCTGGTCTTGGCGCTCGTAAAT
ACTCATGATAAGACACAGCACGCGTCGACACGACTTTTTGTTTAAATCAC
GTTTTCCCCTTTAAGCTACTGCTGCCGAGTGTGGGCGAACGTGAAGCGCT
GGTCGGGACAGGGTGTAGTGTTTGTTTCGGAGATGGTTGATTTTCTTGTC
TAGTTTGAACGTGATGTGAACACAACCCAAACAGAACAGGTCTTTGTTTG
TCGCTGTAGATTCACGAGCCGCTTGCTCGGCACGAGCACCACGGCCCGCC
CGAAAGCTTGCAACGGAAAGCGTATGTAGTAAATCCCCAACGTGTTCGAA
TGGCTTTCTTGTTTCTGTGATGCACGTGAGGTTTGATCCACGCAGTACGC
TCCGATGCACCCGCGCAAAGTCTTTTCCAAGAGCGTGACTTTTGGTTTCA
GCTGCCGGCGGCGGTTGTCGATGCTTGGCGGTTGTCGATGCTTGGTGGGC
GCCTTTTGAGCATAAGTGTTGGGTCTAGGAGGGGGATGGTTGCCTGGACG
ACCTTGGGCTGTGTGTGCTCTCTAAGTGGTTTTGAGATGGGGGGGTAATT
TGGTGGAACGAAAGAAACGCATTGAGTGCTGTCTCCGTGTTGGCGCAAAA
TTGTGTCTTCTTGTACCAATCAGATGCTTCATTCCATTCTGTTGGCGTTA
CCATCTTAAGTCCTGAGTCAATTGCGTCAAAGTTGTGCAGAGAAGAAACC
CAGTGGAAGCTTCGGCTGGGATACCTGCAATGTCGTTTCGTCTTATATAT
GCACGGCAAATCGTGCGGAATGGATTTCGTCTTTGCGGTAACTCGGTGTA
GACTAGTCTAAACCTTTGTGTTTTTTAGCCAACCAAATACGTTCGTTCCC
G back to topCoding sequence (CDS) from alignment at S-firma_F_contig1085:8772..13072+ >mRNA_S-firma_F_contig1085.1139.1 ID=mRNA_S-firma_F_contig1085.1139.1|Name=mRNA_S-firma_F_contig1085.1139.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3708bp|location=Sequence derived from alignment at S-firma_F_contig1085:8772..13072+ (Sphaerotrichia firma ET2_F female) ATGACTCGTGGCGGCAGGAACAAGATGACTCGTGGCGGCAGGAACAAGGA AAAATCGATGGGCGCCGATCACCCGGAGTTGGCCAACACCTTCTGCAACC TCGGGGCTGATGCTGCTGAGGCCAACAAGTTCGAGGAGGCCGTGAGGTAC TACCGACGTGCGCTGGCGATTCAGGAGAAAGCGCTGGGCGTCGATCACCC GGAGGTGGGGAATATCCTTGCCAGCGTCGGAACTTGCGCCGGCAAGTTAG GGAAGACGGAGGAGGCCGACAGGCACTGCCGACGTGCTCTCGAAATACGG AAGAAAACGCTGGGCGTCGGCCACCCGAACCTTCGGAACATCCTGCTGCA CCTCGGGAATTACAATCACCAGATGGGGAGGTTCGAGGAGGCCGAGCAGT ACTCCCGACGGGGGCTGGCGATCCTGGAGAAAACGCTTGGCGTCGATCAT CCGCAGGCGGCCAAGGCCCTGTTCAACCTTGGGGTTTACGCCCGCACGGC CGGGAAGACGGAGGAGGCCGAGAGGTACTACCGACGGGCACTGGCGATTC AGGAGAAAAAACTGGGCGTTGATCACCCAGAGTTGGCGAGGACCCTGGAC ACCCTCGGGGTTTGCGCCAGCGAGGCCGGGAGGATGGAGGAGGCCGAGAG GTATGGTCGGCGTGCGGTCGCGAGTCACACGAAGGCGTTGGGCGCCGACC ATCCGCAGGTGGCGATGACTCTGCACAACCTCGGGGTGAGCGCTGGCCGG GCGGGCAGAGCAGAAGAGGCCGCGGGGTATCATAGACGCGCTCTCGCGAT TCAGGAGAAAACGCTGGGCGTCGATCACCCGCACGTGGCAACCAGCCTGT GCAGCCTCGGGGCTGGTGCTGGAGAGGCTGGGAGGCCAGAGGAGGCCGAG AGGTACTATCGACGTGCTCTCAAGATCCGGGAGAAAAAGCTGGGCTCCGA ACACCCGGACGTGGTAAACGTCATGCTGCTCCTCGGGAATTACAATAACG AGATGGGGAGGACAGAGGAGGCGGTGCGGTATCGTCGGCGTGCTCTCGCG ATTCAGGAGCGAACGTTAGGCGCCGATGATCCCGCTGTGGCGGGCAACTT GCACAACCTCGGAATTTATGCTCGTGAGGCGGGCAAGACTGGGGAGGCCG AGGCGTATCTTCGGCGCGCGCTCGCGATTCGGGAGAAGACGCAGGGCGGT CTGGAGGTGACAAGATGCCTGGTTCAGCTCGGGGTTACTCTTCGTGAGGC AGGAAGGGCAGACGAGGCCGAGGGGTACTTTCGCCGCGCTCGTGAGACGG GCAAGACAGGGGAGGCCGAAGGGTATATTCGACGAGCGCTCGCGATTATG CGGGAGAAAGCGTTGGGCGCCGGTGACCCGGACTTGGCAAGATTCCTGTT TCAGCTCGGGGTTACCGCTAGTGAGGCGGGGAGGGGAGAGGAGGCCAAGG GGTACTTTCAGCGCGCTCTCGCTATTCAGGAGGAATTGGTTGGTGCTGAC AATCCGAGCCTTATCGCCGTCCTTTCCGCACTCGGGGCTGGTGTTTACGC GGCAGGGAGGCCGGAGGAGGCTGAGGGCTACTACCGGCGTGCTCTTACGA TTCAGATGCAAGCGTTGGGTTTCGATCACCCGGACGTGGCAACGACCCTT TCCAAGCTCGGGTGTTGCGCACGAAAGCTAGGGCTAAAGGAGGACGCCGA GAGGTTGTTTCGGCAAGCGCTTGTCATCACGGAGGGCAAGCTTGGTCCTG ATCACCCACGGACGGTGGAAACGCGTGCGGAGCTAGCAGAACTAGGCAAG CCCAGCTGGAATGTCATGATCGCAACGGTTGCTGTCGGTCTGGCGAGTTT TTATTTCGGCTGGTCTTGGCGCTCGTAAGAAAAATCGATGGGCGCCGATC ACCCGGAGTTGGCCAACACCTTCTGCAACCTCGGGGCTGATGCTGCTGAG GCCAACAAGTTCGAGGAGGCCGTGAGGTACTACCGACGTGCGCTGGCGAT TCAGGAGAAAGCGCTGGGCGTCGATCACCCGGAGGTGGGGAATATCCTTG CCAGCGTCGGAACTTGCGCCGGCAAGTTAGGGAAGACGGAGGAGGCCGAC AGGCACTGCCGACGTGCTCTCGAAATACGGAAGAAAACGCTGGGCGTCGG CCACCCGAACCTTCGGAACATCCTGCTGCACCTCGGGAATTACAATCACC AGATGGGGAGGTTCGAGGAGGCCGAGCAGTACTCCCGACGGGGGCTGGCG ATCCTGGAGAAAACGCTTGGCGTCGATCATCCGCAGGCGGCCAAGGCCCT GTTCAACCTTGGGGTTTACGCCCGCACGGCCGGGAAGACGGAGGAGGCCG AGAGGTACTACCGACGGGCACTGGCGATTCAGGAGAAAAAACTGGGCGTT GATCACCCAGAGTTGGCGAGGACCCTGGACACCCTCGGGGTTTGCGCCAG CGAGGCCGGGAGGATGGAGGAGGCCGAGAGGTATGGTCGGCGTGCGGTCG CGAGTCACACGAAGGCGTTGGGCGCCGACCATCCGCAGGTGGCGATGACT CTGCACAACCTCGGGGTGAGCGCTGGCCGGGCGGGCAGAGCAGAAGAGGC CGCGGGGTATCATAGACGCGCTCTCGCGATTCAGGAGAAAACGCTGGGCG TCGATCACCCGCACGTGGCAACCAGCCTGTGCAGCCTCGGGGCTGGTGCT GGAGAGGCTGGGAGGCCAGAGGAGGCCGAGAGGTACTATCGACGTGCTCT CAAGATCCGGGAGAAAAAGCTGGGCTCCGAACACCCGGACGTGGTAAACG TCATGCTGCTCCTCGGGAATTACAATAACGAGATGGGGAGGACAGAGGAG GCGGTGCGGTATCGTCGGCGTGCTCTCGCGATTCAGGAGCGAACGTTAGG CGCCGATGATCCCGCTGTGGCGGGCAACTTGCACAACCTCGGAATTTATG CTCGTGAGGCGGGCAAGACTGGGGAGGCCGAGGCGTATCTTCGGCGCGCG CTCGCGATTCGGGAGAAGACGCAGGGCGGTCTGGAGGTGACAAGATGCCT GGTTCAGCTCGGGGTTACTCTTCGTGAGGCAGGAAGGGCAGACGAGGCCG AGGGGTACTTTCGCCGCGCTCGTGAGACGGGCAAGACAGGGGAGGCCGAA GGGTATATTCGACGAGCGCTCGCGATTATGCGGGAGAAAGCGTTGGGCGC CGGTGACCCGGACTTGGCAAGATTCCTGTTTCAGCTCGGGGTTACCGCTA GTGAGGCGGGGAGGGGAGAGGAGGCCAAGGGGTACTTTCAGCGCGCTCTC GCTATTCAGGAGGAATTGGTTGGTGCTGACAATCCGAGCCTTATCGCCGT CCTTTCCGCACTCGGGGCTGGTGTTTACGCGGCAGGGAGGCCGGAGGAGG CTGAGGGCTACTACCGGCGTGCTCTTACGATTCAGATGCAAGCGTTGGGT TTCGATCACCCGGACGTGGCAACGACCCTTTCCAAGCTCGGGTGTTGCGC ACGAAAGCTAGGGCTAAAGGAGGACGCCGAGAGGTTGTTTCGGCAAGCGC TTGTCATCACGGAGGGCAAGCTTGGTCCTGATCACCCACGGACGGTGGAA ACGCGTGCGGAGCTAGCAGAACTAGGCAAGCCCAGCTGGAATGTCATGAT CGCAACGGTTGCTGTCGGTCTGGCGAGTTTTTATTTCGGCTGGTCTTGGC GCTCGTAA back to top
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