mRNA_S-firma_F_contig10849.1137.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10849.1137.1
Unique NamemRNA_S-firma_F_contig10849.1137.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10849.1137.1 vs. uniprot
Match: A0A6H5KMY2_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY2_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 1.430e-76
Identity = 180/336 (53.57%), Postives = 211/336 (62.80%), Query Frame = 1 
Query:  313 ARQDWKAWYKDFPVVRRMVCTMLCRALVRGCDEAAALLTPAATVAVRRMADQRWLWATLGELLQKSADATAATGEAGERGGADKGGG----GSVGKKSGKEKGAVPRVLKPETLVLILKLFSIGLESAAVSDAVFFKALDVVANLLRLASPPXXXXXXXXXT----SDGKRKPPXLXXXXXXXXXXXXXXXXXXXXAVVPRSALEDVVNQAAIRATRPTRRPRTEVEEEQIKEAFERVFAKSPPAWASKLSEYRAKHAEKLAK------------------------KASEISKPISIKGPKREREEAXXXXXXXXXXXXXXSDAARKRKSRRVDV 1224
            A QDW+ WY D P +RR+VCTMLCRA+VRG DEAAA+L PAA  AV+RMADQRWLWA+LGEL Q+SADA+AAT  A      ++GGG    G  GKK GKEKG +PRVLKPETL+L+L+LFS GLE A V+DAVF KAL++VA LL LASP XXXXXXXXX        K KP                       A++PRSALEDVVNQAA RA RP RRP ++ EE + KEAF +V AKSPP WA+K+SEYRAK AEK  K                         A   S+PISIKGPKR R+EA               D   ++KSRRV+V
Sbjct:  281 AGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGELAQRSADASAATAAAAAP--VNEGGGVVAAGVAGKKCGKEKGTMPRVLKPETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXGGDKSKP------------KPSAPGKGAVTALLPRSALEDVVNQAAARAARPPRRPLSQAEELRAKEAFAKVLAKSPPGWANKVSEYRAKLAEKSRKGGGGKVVGDGGGXXXXXXXXXXXXXAGRPSRPISIKGPKRGRQEAGGGGDEGV------DDTDSRKKSRRVNV 596
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BLAST of mRNA_S-firma_F_contig10849.1137.1 vs. uniprot
Match: D7FZE7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE7_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 1.080e-74
Identity = 188/339 (55.46%), Postives = 216/339 (63.72%), Query Frame = 1 
Query:  307 AAARQDWKAWYKDFPVVRRMVCTMLCRALVRGCDEAAALLTPAATVAVRRMADQRWLWATLGELLQKSADATAATGEAGERGGADKGGG----GSVGKKSGKEKGAVPRVLKPETLVLILKLFSIGLESAAVSDAVFFKALDVVANLLRLASPPXXXXXXXXXT-----SDGKRKPPXLXXXXXXXXXXXXXXXXXXXXAVVPRSALEDVVNQAAIRATRPTRRPRTEVEEEQIKEAFERVFAKSPPAWASKLSEYRAKHAEKLAKKAS------------------------EISKPISIKGPKREREEAXXXXXXXXXXXXXXSDAARKRKSRRVDV 1224
            A A QDW+ WY D P +RR+VCTMLCRA+VRG DEAA +L PAA  AV+RMADQRWLWA+LGEL+Q+SADA+AA   A     A  GGG    G  GKK GKEKGAVPRVLKPETL+L+L+LFS GLE A V+DAVF KAL++VA LL LASP XXXXXXXXX         K KP                       A++PRSALEDVVNQAA RA RP RRP +E EE + KEAF +VFAKSPP WA+K+SEYRAK AEK  K  +                            PISIKGPKR R+E   XXXXX         A+RK+KSRRV+V
Sbjct:  538 ATAGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAGVLMPAAKAAVKRMADQRWLWASLGELVQRSADASAAAVAAAP---AKDGGGVVAAGVAGKKGGKEKGAVPRVLKPETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXXGGDKSKP------------KPSAPGKGAVAALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPGWANKVSEYRAKLAEKSRKGGAGKVVGGGDXXXXXXXXXXXXXXXXXXXXPISIKGPKRGRQETGGXXXXXVDDA-----ASRKKKSRRVNV 856
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10849.1137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMY2_9PHAE1.430e-7653.57Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FZE7_ECTSI1.080e-7455.46Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10849contigS-firma_F_contig10849:792..2829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FZE7
Preferred nameBPTF
PFAMsBromodomain,DDT,PHD,WHIM1,WSD
Max annot lvl2759|Eukaryota
Evalue2.08e-67
EggNOG OGsCOG5076@1|root,KOG1472@2759|Eukaryota
Descriptionhistone acetyltransferase activity
COG categoryBK
Hectar predicted targeting categoryother localisation
Exons2
Model size1618
Cds size864
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10849.1137.1prot_S-firma_F_contig10849.1137.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10849 1155..2438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.3525739-UTR-S-firma_F_contig10849:791..11541622815628.3525739-UTR-S-firma_F_contig10849:791..1154Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10849 792..1154 +
1696949464.2230175-UTR-S-firma_F_contig10849:791..11541696949464.2230175-UTR-S-firma_F_contig10849:791..1154Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10849 792..1154 +
1622815628.3923209-UTR-S-firma_F_contig10849:2438..28291622815628.3923209-UTR-S-firma_F_contig10849:2438..2829Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10849 2439..2829 +
1696949464.2527978-UTR-S-firma_F_contig10849:2438..28291696949464.2527978-UTR-S-firma_F_contig10849:2438..2829Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10849 2439..2829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.3661156-CDS-S-firma_F_contig10849:1154..14271622815628.3661156-CDS-S-firma_F_contig10849:1154..1427Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10849 1155..1427 +
1696949464.2347405-CDS-S-firma_F_contig10849:1154..14271696949464.2347405-CDS-S-firma_F_contig10849:1154..1427Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10849 1155..1427 +
1622815628.379709-CDS-S-firma_F_contig10849:1847..24381622815628.379709-CDS-S-firma_F_contig10849:1847..2438Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10849 1848..2438 +
1696949464.2437377-CDS-S-firma_F_contig10849:1847..24381696949464.2437377-CDS-S-firma_F_contig10849:1847..2438Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10849 1848..2438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10849.1137.1

>prot_S-firma_F_contig10849.1137.1 ID=prot_S-firma_F_contig10849.1137.1|Name=mRNA_S-firma_F_contig10849.1137.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=288bp
MVCTMLCRALVRGCDEAAALLTPAATVAVRRMADQRWLWATLGELLQKSA
DATAATGEAGERGGADKGGGGSVGKKSGKEKGAVPRVLKPETLVLILKLF
SIGLESAAVSDAVFFKALDVVANLLRLASPPPPASTTTAATSDGKRKPPP
LPLPGKGSSAAGAGAGAGAAAAVVPRSALEDVVNQAAIRATRPTRRPRTE
VEEEQIKEAFERVFAKSPPAWASKLSEYRAKHAEKLAKKASEISKPISIK
GPKREREEASGGGGGGAGGEVGGSDAARKRKSRRVDV*
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mRNA from alignment at S-firma_F_contig10849:792..2829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10849.1137.1 ID=mRNA_S-firma_F_contig10849.1137.1|Name=mRNA_S-firma_F_contig10849.1137.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2038bp|location=Sequence derived from alignment at S-firma_F_contig10849:792..2829+ (Sphaerotrichia firma ET2_F female)
GGGGCGCCAATTTCCTCTGAAAGGGTCTCGTATAGTTGGCGGCCTGCGGC
CGCAAAAACGCTGGCCCGGTACATCAAAAAAATTTCCCTGAACTACCCGC
AACTCCTCCCATTTTCGCTGTGTCGCTTACGCGTGCAGAGTGCATGCATC
CCCCAATATTTCATTCAACGCACAGACAAGTATTCCACGACGCGCCTCTT
GCCTTTCTTCCCCTCCGCTCCCTTCTCCTCCTATCGCCGCTGCTTTCGCG
CATCTTTCTCAGCCGCACCGCCTGCCTCCGACGCCGAGAAGGAGGAGGAC
GCCGCGGCGGCAGCCCGGCAGGACTGGAAGGCGTGGTACAAAGACTTCCC
CGTGGTGCGGCGCATGGTCTGCACGATGCTGTGCCGGGCGCTGGTGAGGG
GCTGCGACGAGGCCGCGGCCCTGCTCACGCCGGCGGCGACGGTGGCGGTA
AGGAGGATGGCGGACCAGCGGTGGCTCTGGGCGACCCTGGGGGAGCTGCT
GCAGAAGAGCGCGGATGCGACGGCGGCGACGGGGGAGGCGGGCGAACGCG
GGGGCGCGGACAAGGGCGGCGGGGGAAGTGTCGGGAAGAAAAGTGGAAAG
GAGAAGGGGGCTGTGCCGCGGGTGCTGAAGCCTGAGGTGCGGGTGGTTGC
CGATGCTGAGTACGAGTTGGTTCAACGGGAGATCAAAACCGGGCGCTTTC
ACTGTCCCGTTAGTCGGTTGTTTGTTGCCGCAATAGATGTTTTGTCTGTC
GTCGTGCGTAGGTTTGGGGGGGCGCCGGGAGGCAGGGTGGTGTTCAGATG
TTTTCACCCTACTCCGTACACCAGCAGGCACCTTGTAGCATAGCTATTGG
AAAGACGGTAATCTTTTCTCATGCTCTCCTCGATGTGTTTTGGCACGTGC
CCATATACAAGACATTGCTTTGCCCCCCATACTGTACCTGCGGATTTTGG
TAGCTACCTTCCATCGACACGAAGAACCTACGACCTTACAACAACAGCGC
ACACCCCTTCCCCCAACGTTCCTACCCGTCCCACCCTTTCGTCGAACAAA
AAAAAGACATTGGTGCTCATCCTGAAGCTGTTCTCGATAGGGCTGGAATC
GGCGGCTGTCTCGGACGCCGTTTTCTTCAAGGCGCTCGACGTTGTGGCCA
ACCTCTTGCGTCTGGCATCCCCGCCACCCCCTGCGTCCACCACTACCGCG
GCCACCAGCGACGGCAAGCGGAAGCCGCCGCCGCTGCCGTTGCCTGGCAA
AGGATCCAGCGCTGCCGGTGCTGGTGCCGGTGCTGGTGCTGCCGCCGCTG
TCGTACCCCGCTCGGCGTTGGAGGATGTCGTGAATCAGGCCGCCATCCGG
GCAACGCGCCCCACGCGGCGCCCGAGAACGGAGGTGGAGGAGGAACAGAT
CAAGGAGGCCTTCGAGAGAGTGTTTGCGAAGTCGCCGCCCGCGTGGGCGA
GCAAGCTCTCGGAGTACAGGGCCAAGCATGCGGAGAAGCTCGCGAAGAAG
GCGTCGGAGATTAGCAAGCCCATCTCGATCAAGGGTCCCAAGAGGGAACG
CGAGGAGGCCAGCGGTGGCGGCGGCGGCGGGGCTGGTGGTGAAGTCGGCG
GGTCGGACGCCGCCCGGAAAAGAAAAAGTCGGCGGGTTGACGTGTGATGG
ACTTTTTCTTTACGGTGACTGACGCCGTTGGTAGGTTAGTTGTGCTAGTT
TTGAGGCCACGATCCTAGCCGAAGAGAACGATTGAAAGGGTCAAGTAGGC
GCCAGGTTAACGAGGTGGTGAAGGCCCGAGTCGTGCCTCCTCTATGAAGC
AAAGTGTGCCGTCGTTAGTGAGGCCTGATTGCCGACCGTCCGGACGAAGA
AGTCGGAGGTTGGAGCGGGATGTGCGAAGGTGCTAAGCAGTATGTACATC
TGAAACAGGTGTAGTCGCGCGCTAGCTGTTGCTTTGGCAGTGCACTGCTT
CAGTGGGAAGAAGGGAGGGAGGGAGGGTGCTCCCACCTGGGGCAGCGGTT
GTCTACCTTGGGTTCGAATGCCGGCTCGGAAAATACAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10849:792..2829+

>mRNA_S-firma_F_contig10849.1137.1 ID=mRNA_S-firma_F_contig10849.1137.1|Name=mRNA_S-firma_F_contig10849.1137.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1728bp|location=Sequence derived from alignment at S-firma_F_contig10849:792..2829+ (Sphaerotrichia firma ET2_F female)
ATGGTCTGCACGATGCTGTGCCGGGCGCTGGTGAGGGGCTGCGACGAGGC
CGCGGCCCTGCTCACGCCGGCGGCGACGGTGGCGGTAAGGAGGATGGCGG
ACCAGCGGTGGCTCTGGGCGACCCTGGGGGAGCTGCTGCAGAAGAGCGCG
GATGCGACGGCGGCGACGGGGGAGGCGGGCGAACGCGGGGGCGCGGACAA
GGGCGGCGGGGGAAGTGTCGGGAAGAAAAGTGGAAAGGAGAAGGGGGCTG
TGCCGCGGGTGCTGAAGCCTGAGATGGTCTGCACGATGCTGTGCCGGGCG
CTGGTGAGGGGCTGCGACGAGGCCGCGGCCCTGCTCACGCCGGCGGCGAC
GGTGGCGGTAAGGAGGATGGCGGACCAGCGGTGGCTCTGGGCGACCCTGG
GGGAGCTGCTGCAGAAGAGCGCGGATGCGACGGCGGCGACGGGGGAGGCG
GGCGAACGCGGGGGCGCGGACAAGGGCGGCGGGGGAAGTGTCGGGAAGAA
AAGTGGAAAGGAGAAGGGGGCTGTGCCGCGGGTGCTGAAGCCTGAGACAT
TGGTGCTCATCCTGAAGCTGTTCTCGATAGGGCTGGAATCGGCGGCTGTC
TCGGACGCCGTTTTCTTCAAGGCGCTCGACGTTGTGGCCAACCTCTTGCG
TCTGGCATCCCCGCCACCCCCTGCGTCCACCACTACCGCGGCCACCAGCG
ACGGCAAGCGGAAGCCGCCGCCGCTGCCGTTGCCTGGCAAAGGATCCAGC
GCTGCCGGTGCTGGTGCCGGTGCTGGTGCTGCCGCCGCTGTCGTACCCCG
CTCGGCGTTGGAGGATGTCGTGAATCAGGCCGCCATCCGGGCAACGCGCC
CCACGCGGCGCCCGAGAACGGAGGTGGAGGAGGAACAGATCAAGGAGGCC
TTCGAGAGAGTGTTTGCGAAGTCGCCGCCCGCGTGGGCGAGCAAGCTCTC
GGAGTACAGGGCCAAGCATGCGGAGAAGCTCGCGAAGAAGGCGTCGGAGA
TTAGCAAGCCCATCTCGATCAAGGGTCCCAAGAGGGAACGCGAGGAGGCC
AGCGGTGGCGGCGGCGGCGGGGCTGGTGGTGAAGTCGGCGGGTCGGACGC
CGCCCGGAAAAGAAAAAGTCGGCGGGTTGACGTGTGAACATTGGTGCTCA
TCCTGAAGCTGTTCTCGATAGGGCTGGAATCGGCGGCTGTCTCGGACGCC
GTTTTCTTCAAGGCGCTCGACGTTGTGGCCAACCTCTTGCGTCTGGCATC
CCCGCCACCCCCTGCGTCCACCACTACCGCGGCCACCAGCGACGGCAAGC
GGAAGCCGCCGCCGCTGCCGTTGCCTGGCAAAGGATCCAGCGCTGCCGGT
GCTGGTGCCGGTGCTGGTGCTGCCGCCGCTGTCGTACCCCGCTCGGCGTT
GGAGGATGTCGTGAATCAGGCCGCCATCCGGGCAACGCGCCCCACGCGGC
GCCCGAGAACGGAGGTGGAGGAGGAACAGATCAAGGAGGCCTTCGAGAGA
GTGTTTGCGAAGTCGCCGCCCGCGTGGGCGAGCAAGCTCTCGGAGTACAG
GGCCAAGCATGCGGAGAAGCTCGCGAAGAAGGCGTCGGAGATTAGCAAGC
CCATCTCGATCAAGGGTCCCAAGAGGGAACGCGAGGAGGCCAGCGGTGGC
GGCGGCGGCGGGGCTGGTGGTGAAGTCGGCGGGTCGGACGCCGCCCGGAA
AAGAAAAAGTCGGCGGGTTGACGTGTGA
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