mRNA_S-firma_F_contig10847.1135.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10847.1135.1
Unique NamemRNA_S-firma_F_contig10847.1135.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10847.1135.1 vs. uniprot
Match: UPI0018D655C1 (zinc finger FYVE domain-containing protein 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D655C1)

HSP 1 Score: 56.6 bits (135), Expect = 9.400e-6
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:  295 CSACGIQFTWRMRRHHCRGCKKAVCDPCSKERLQIVG-GDNKRHRVCHPCIKQ 450
            CS C ++FT +MR+HHCR C K VCD CS +R  +   G ++  RVC  C K+
Sbjct:  995 CSCCQVEFTSKMRKHHCRACGKGVCDECSGKRSPVPSRGWDEAVRVCDNCDKK 1047
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BLAST of mRNA_S-firma_F_contig10847.1135.1 vs. uniprot
Match: A0A8B7Y0G1_ACAPL (zinc finger FYVE domain-containing protein 1-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y0G1_ACAPL)

HSP 1 Score: 55.8 bits (133), Expect = 1.710e-5
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:  295 CSACGIQFTWRMRRHHCRGCKKAVCDPCSKERLQIVG-GDNKRHRVCHPCIKQ 450
            CS C ++FT +MR+HHCR C K VC  CS++R  +   G ++  RVC+ C K+
Sbjct: 1000 CSCCQLEFTSKMRKHHCRACGKGVCGDCSEKRRPVPSRGWDEAVRVCNKCDKK 1052
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BLAST of mRNA_S-firma_F_contig10847.1135.1 vs. uniprot
Match: A0A0S7GUH1_9TELE (FYCO1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7GUH1_9TELE)

HSP 1 Score: 53.9 bits (128), Expect = 7.390e-5
Identity = 29/83 (34.94%), Postives = 36/83 (43.37%), Query Frame = 1 
Query:  283 QSKSCSACGIQFTWRMRRHHCRGCKKAVCDPCSKERLQIVGGDNKRHRVCHPCIKQHLASGRTRDNRLVRPQSVAPSSLRSSP 531
            ++  C  C  QFTW +RRHHCR C +  C  CS     +     K+ R C  C  QH A         V    V PS  R+ P
Sbjct:  657 EATHCLGCNDQFTWWVRRHHCRVCGRIFCYNCSNN-FVLTKHSGKKERCCSDCYMQHSAVVEKYIESEVSSSDVLPSPARAGP 738
[Close]
BLAST of mRNA_S-firma_F_contig10847.1135.1 vs. uniprot
Match: A0A0S7GRV8_9TELE (FYCO1 (Fragment) n=3 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7GRV8_9TELE)

HSP 1 Score: 53.9 bits (128), Expect = 7.670e-5
Identity = 29/83 (34.94%), Postives = 36/83 (43.37%), Query Frame = 1 
Query:  283 QSKSCSACGIQFTWRMRRHHCRGCKKAVCDPCSKERLQIVGGDNKRHRVCHPCIKQHLASGRTRDNRLVRPQSVAPSSLRSSP 531
            ++  C  C  QFTW +RRHHCR C +  C  CS     +     K+ R C  C  QH A         V    V PS  R+ P
Sbjct:  847 EATHCLGCNDQFTWWVRRHHCRVCGRIFCYNCSNN-FVLTKHSGKKERCCSDCYMQHSAVVEKYIESEVSSSDVLPSPARAGP 928
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10847.1135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI0018D655C19.400e-647.17zinc finger FYVE domain-containing protein 1-like ... [more]
A0A8B7Y0G1_ACAPL1.710e-545.28zinc finger FYVE domain-containing protein 1-like ... [more]
A0A0S7GUH1_9TELE7.390e-534.94FYCO1 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
A0A0S7GRV8_9TELE7.670e-534.94FYCO1 (Fragment) n=3 Tax=Poeciliopsis prolifica Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10847contigS-firma_F_contig10847:2454..4807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LNH7
PFAMsDUF3480,FYVE,PI3K_C2,PI3Ka,PI3_PI4_kinase
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00914,ko:K04679
KEGG ReactionR03362
KEGG Pathwayko00562,ko01100,ko04070,ko04136,ko04138,ko04140,ko04144,ko04145,ko04350,ko04371,ko05152,ko05167,map00562,map01100,map04070,map04136,map04138,map04140,map04144,map04145,map04350,map04371,map05152,map05167
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
Evalue7.54e-78
EggNOG OGsCOG5032@1|root,KOG1841@1|root,KOG0906@2759|Eukaryota,KOG1841@2759|Eukaryota
EC2.7.1.137
Description1-phosphatidylinositol binding
COG categoryS
BRITEko00000,ko00001,ko01000,ko01009,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size662
Cds size660
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10847.1135.1prot_S-firma_F_contig10847.1135.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10847 2454..4807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.1184359-CDS-S-firma_F_contig10847:2453..26301622815628.1184359-CDS-S-firma_F_contig10847:2453..2630Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10847 2454..2630 -
1696949464.0871563-CDS-S-firma_F_contig10847:2453..26301696949464.0871563-CDS-S-firma_F_contig10847:2453..2630Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10847 2454..2630 -
1622815628.1342525-CDS-S-firma_F_contig10847:3012..31351622815628.1342525-CDS-S-firma_F_contig10847:3012..3135Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10847 3013..3135 -
1696949464.1131608-CDS-S-firma_F_contig10847:3012..31351696949464.1131608-CDS-S-firma_F_contig10847:3012..3135Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10847 3013..3135 -
1622815628.1476283-CDS-S-firma_F_contig10847:4447..48071622815628.1476283-CDS-S-firma_F_contig10847:4447..4807Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10847 4448..4807 -
1696949464.1237278-CDS-S-firma_F_contig10847:4447..48071696949464.1237278-CDS-S-firma_F_contig10847:4447..4807Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10847 4448..4807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10847.1135.1

>prot_S-firma_F_contig10847.1135.1 ID=prot_S-firma_F_contig10847.1135.1|Name=mRNA_S-firma_F_contig10847.1135.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=220bp
MSDTEDVQLPIPSRTTGVYASGVNSLRSGRGGTAGAAGRSSRKVVEGLRT
ASSRRLNYSSFTSNGSNKGMNGENTEGSATGSIAGAGRGGGGGTQSKSCS
ACGIQFTWRMRRHHCRGCKKAVCDPCSKERLQIVGGDNKRHRVCHPCIKQ
HLASGRTRDNRLVRPQSVAPSSLRSSPFESRDTSRNVSRDASRHGPGSSS
KGLATYAEDQEPGEPRPPPP
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mRNA from alignment at S-firma_F_contig10847:2454..4807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10847.1135.1 ID=mRNA_S-firma_F_contig10847.1135.1|Name=mRNA_S-firma_F_contig10847.1135.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2354bp|location=Sequence derived from alignment at S-firma_F_contig10847:2454..4807- (Sphaerotrichia firma ET2_F female)
ATGAGCGACACTGAGGATGTGCAGCTCCCGATCCCATCGAGAACGACGGG
AGTGTACGCCAGCGGCGTGAACAGCCTGCGATCAGGGCGTGGAGGCACGG
CAGGGGCAGCTGGGCGTTCGTCGAGGAAGGTGGTCGAGGGCCTGAGGACG
GCCAGCTCTCGGCGCCTCAACTACAGCTCCTTCACCTCGAATGGCTCGAA
CAAGGGCATGAACGGGGAGAACACGGAGGGATCGGCCACGGGGAGCATCG
CCGGCGCGGGGCGGGGAGGCGGGGGTGGCACCCAGAGCAAGTCATGCTCG
GCATGCGGCATACAGTTCACGTGGCGAATGAGGCGCCATCACTGCCGAGG
CTGCAAGAAGGTCGGTTGCGTGATCTTTGGAGCCTGCGGCAGGGCTAGCC
ACCGACGTAGAAGGGCGGTAGGCGAGTCCTGGGTTGGGTGTTTCGACGTG
TTGGGCAGCGGGGGATACCAGGTGTGTGTGGTCAGGATCCCACACGCATG
TGTGTACAGTAGTAGTGTGAAGATGAGAGAGCAGCTCGGGCGCAAACACG
CAACACATTTCAAAAACTAAATTTTGTTGAAGTTTTTACCCTCCTCCCCC
GCCTCCGCCTTCACACGCCAGGGTGGTGGTACGGCGCTGCGTGCGCTGCC
TGTGTAGAGCGGGCTTCTCTCCCCGGCGATTTCGCGTACGCAGAAGGAAC
ATCCTTTCCCCTGCTCTGCTGTGTACGCAGGGATGCAAGGGTTCTCTCAG
AACACAAACGATTTTTTTTTGAAATTGTCGGGTACCCAGCGAAAAACAGC
GGCAGCTTTTCCAAAACCGGCAGTCGTCACCCTCGCGTCCCCTCCCGTCT
CTCTCTCTCTTTCCAACACACGCACGTCCTTGTCCCGAAAGTAGGACAGG
AACTCTTGCGTTTAGTCTTGTTTTTGTCACAAAGCTTCGTTGAAGCTGGC
GTGGATGAATCGTAATCATAATCATCCACAGGCAGAGAGGGAAACGGGTT
CAAAGAGCGAATTGACCATGTGCATCAGAAAATAAGCAGACTAAATAATA
GCGCCTTTTACGGCAACCGGAAGACGAAAACGTTTAGCCGCCGCGTTAAA
CTCGTATCGTAGGCACATCGTCCGTCCTTAACGGGCATTCCATTAGAAGC
ATGTGGGTATTTTTTTTTGCGTTTTCTCTTCCAGATACAGAGTACTCCAA
CAAACAGGTGTCCCCCGTTGCTGTTGTTTCAAAATCCGCGTACTAGAAAT
GGTTGATCGAACGATAAGCGGATGGCCGAATCACGCCATCGTCGAGAAAC
CAACGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGTGCACCAACCGC
ACGCAGTTTTAACTATGATGGCTTGCTTTTCCCCAAGCGGCGGTCATGTC
GTATGATACCTCACGGGCATCACAGCATCAGAAAAGCATACGGATTGCGG
ATTTTGTGCTGTTGGCTGGGACGGGGAGGGTAGACTAGTGTGTGAGTCCC
CCTGGACCGACGTGTTCACAGGACGGACGTATAAGGCTGACGAATATAGA
AAATTTATGAAAAGAATGTTAATTAAGGGGTGACGACGTGGATCGTATAT
CCGCGGACCATCGGACTCATTCATGAACGCGGCCGCGATCCGTCCCATTC
TCTCTCGCCCCCCCCGCCCCAGGCGGTCTGTGACCCTTGCAGCAAGGAGC
GGCTGCAGATCGTAGGCGGGGACAACAAGCGGCATCGTGTGTGCCACCCT
TGCATCAAGCAGCACCTCGCATCGGGCCGTACGCGCGACAATCGGGTGAG
CGTTGTAGCATTGTATTGGCTAGCCGCGGGAATAGTGGTTGATGTAACGA
AGATGGCCCTAAATATAAAGCCAGATCGCGATGCCGCTACTGATAGCGAT
GCAGTAGTGTGCACCTTCATCGCCCGGCGAAGACGGTGTCCGTGCTCGTA
GATGAGGGAGATTCCTGCTGCATCACTGGCCTCGTACTACTGTAGCGCAT
CAAGAGGGAGAGCGCGTCCGTCCGTCGACCTCTGACAAAACTCCCCCGTC
TCTCGCGCGCTCTTCTCTTTTCTCTTACAACCCCAAAACCGACTCACTCC
TCGCGGCAACAACGCGTGCGTGCATGACGCTGCCTCTTGTCTCCGAACGC
ACCCCCCCGACACCTGGACGGGAACAGCTGGTCCGACCGCAGTCGGTGGC
ACCGTCGAGCCTCCGGTCCTCCCCCTTCGAGTCCCGAGACACCTCGAGGA
ACGTCTCTCGAGACGCTTCCCGCCACGGCCCCGGCAGCAGCAGCAAGGGA
CTGGCCACGTACGCCGAAGACCAAGAGCCCGGGGAGCCGCGGCCGCCCCC
GCCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10847:2454..4807-

>mRNA_S-firma_F_contig10847.1135.1 ID=mRNA_S-firma_F_contig10847.1135.1|Name=mRNA_S-firma_F_contig10847.1135.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1320bp|location=Sequence derived from alignment at S-firma_F_contig10847:2454..4807- (Sphaerotrichia firma ET2_F female)
ATGAGCGACACTGAGGATGTGCAGCTCCCGATCCCATCGAGAACGACGGG
AGTGTACGCCAGCGGCGTGAACAGCCTGCGATCAGGGCGTGGAGGCACGG
CAGGGGCAGCTGGGCGTTCGTCGAGGAAGGTGGTCGAGGGCCTGAGGACG
GCCAGCTCTCGGCGCCTCAACTACAGCTCCTTCACCTCGAATGGCTCGAA
CAAGGGCATGAACGGGGAGAACACGGAGGGATCGGCCACGGGGAGCATCG
CCGGCGCGGGGCGGGGAGGCGGGGGTGGCACCCAGAGCAAGTCATGCTCG
GCATGCGGCATACAGTTCACGTGGCGAATGAGGCGCCATCACTGCCGAGG
CTGCAAGAAGATGAGCGACACTGAGGATGTGCAGCTCCCGATCCCATCGA
GAACGACGGGAGTGTACGCCAGCGGCGTGAACAGCCTGCGATCAGGGCGT
GGAGGCACGGCAGGGGCAGCTGGGCGTTCGTCGAGGAAGGTGGTCGAGGG
CCTGAGGACGGCCAGCTCTCGGCGCCTCAACTACAGCTCCTTCACCTCGA
ATGGCTCGAACAAGGGCATGAACGGGGAGAACACGGAGGGATCGGCCACG
GGGAGCATCGCCGGCGCGGGGCGGGGAGGCGGGGGTGGCACCCAGAGCAA
GTCATGCTCGGCATGCGGCATACAGTTCACGTGGCGAATGAGGCGCCATC
ACTGCCGAGGCTGCAAGAAGGCGGTCTGTGACCCTTGCAGCAAGGAGCGG
CTGCAGATCGTAGGCGGGGACAACAAGCGGCATCGTGTGTGCCACCCTTG
CATCAAGCAGCACCTCGCATCGGGCCGTACGCGCGACAATCGGGCGGTCT
GTGACCCTTGCAGCAAGGAGCGGCTGCAGATCGTAGGCGGGGACAACAAG
CGGCATCGTGTGTGCCACCCTTGCATCAAGCAGCACCTCGCATCGGGCCG
TACGCGCGACAATCGGCTGGTCCGACCGCAGTCGGTGGCACCGTCGAGCC
TCCGGTCCTCCCCCTTCGAGTCCCGAGACACCTCGAGGAACGTCTCTCGA
GACGCTTCCCGCCACGGCCCCGGCAGCAGCAGCAAGGGACTGGCCACGTA
CGCCGAAGACCAAGAGCCCGGGGAGCCGCGGCCGCCCCCGCCGCTGGTCC
GACCGCAGTCGGTGGCACCGTCGAGCCTCCGGTCCTCCCCCTTCGAGTCC
CGAGACACCTCGAGGAACGTCTCTCGAGACGCTTCCCGCCACGGCCCCGG
CAGCAGCAGCAAGGGACTGGCCACGTACGCCGAAGACCAAGAGCCCGGGG
AGCCGCGGCCGCCCCCGCCG
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