mRNA_S-firma_F_contig1084.1126.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1084.1126.1
Unique NamemRNA_S-firma_F_contig1084.1126.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1084.1126.1 vs. uniprot
Match: A0A6H5KK33_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK33_9PHAE)

HSP 1 Score: 399 bits (1025), Expect = 2.960e-120
Identity = 209/363 (57.58%), Postives = 238/363 (65.56%), Query Frame = 2 
Query:  305 ASPPEGMRPPETEEFDLSGWDSLEMTSVLRWPCPLEAVCKIYTAAITSLTEGLPWIRAADVWHVSSILEHEAVFTPEPNP-------------IDNQAIVAGDTNAAGGDTESIGTLTVDSGRTVNT--RCGDGARFCERVIGKTWSGYPAVVLRSLRVPGRDEAACTARWLRGNGEDGGGVFGDDEGWTDQRLRLLADEWRVCTVMGD---------GDGRPGL--------------------------GSSVGSPSASP---GASRRSVPRPFMLHTGHVIVPFLNGCLRESESGGNREVFGHGVVLAVDRGVDWRRWESHLIETAVVATRCFERLERDGEVAERERVKGWKEELLHSQT 1234
            +SPP  +R PE +E  LS WDSL+MTS+LRWPCP EAVC IY+AA+ +LTEGLPW+RAADVWHVSSI +H+ VF PE  P             +D++A +    N   GD   IG+LTVDSG T         GA FCER++GKTWSG PAV+LRSLRVPGRDEA C ARWLRGNGE GGGVFGDD+GWTDQRLRLLADEWR CT  G          G G PG                           GS   +  +SP     S R+ PRPFMLHTGHVIVPFLNG +RE+E G    V GHGVVLAVDRGVDWR WESHL ETA VATRCF+RLER+GE  ERERV  W E+LL+  T
Sbjct: 2547 SSPPRSIRRPELDEVGLSSWDSLDMTSILRWPCPYEAVCNIYSAAVKALTEGLPWVRAADVWHVSSIPDHKKVFEPETPPPPIKTRKDNNDVALDDEASIIDGNNTVDGDMGRIGSLTVDSGGTAGHGGEIRGGAYFCERIVGKTWSGSPAVILRSLRVPGRDEAVCAARWLRGNGEGGGGVFGDDDGWTDQRLRLLADEWRACTSAGGMPDYELASGGGGGPGFRCRDITATTAPATVGSGTSGTAAAIAGSDTAATLSSPLPLALSPRATPRPFMLHTGHVIVPFLNGRVRETEKGCPNVVIGHGVVLAVDRGVDWRCWESHLTETAAVATRCFDRLEREGESVERERVNDWAEKLLNRNT 2909
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BLAST of mRNA_S-firma_F_contig1084.1126.1 vs. uniprot
Match: D8LEV4_ECTSI (C2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV4_ECTSI)

HSP 1 Score: 349 bits (896), Expect = 5.280e-103
Identity = 189/328 (57.62%), Postives = 214/328 (65.24%), Query Frame = 2 
Query:  410 EAVCKIYTAAITSLTEGLPWIRAADVWHVSSILEHEAVFTPEPNP-------------IDNQAIVAGDTNAAGGDTESIGTLTVDSGRTVNTRCGD---GARFCERVIGKTWSGYPAVVLRSLRVPGRDEAACTARWLRGNGEDGGGVFGDDEGWTDQRLRLLADEWRVCTVMGD---------GDGRPG--------------LGSSVGSPSASPGASR--------------RSVPRPFMLHTGHVIVPFLNGCLRESESGGNREVFGHGVVLAVDRGVDWRRWESHLIETAVVATRCFERLERDGEVAERERVKGWKEELLHSQT 1234
            EAVCKIY+AA+ +LTEGLPW+RAADVWHVSSI +H+ VF PEP               +D++A +   +N   GD  SIG+LTVDSG       GD   GA FCER++GKTWSG PAV+LRSLRVPGRDEAAC ARWLR NGE GGGVFGDD+GWTDQRLRLLADEW  CT  G          G G PG              +GS     +A  G+                R+ PRPFMLHTGHVIVPFLNG +RE+E  G   V GHGVVLAVDRGVDWR WESHL ETA VATRCFERLER+GE  ERERV  W E+LL+  T
Sbjct: 5290 EAVCKIYSAAVKALTEGLPWVRAADVWHVSSIPDHKKVFEPEPPXXPIKTRKDNNDVAVDDEASIVDGSNTVDGDMGSIGSLTVDSGGPAG-HGGDIRVGAYFCERIVGKTWSGAPAVILRSLRVPGRDEAACAARWLRENGEGGGGVFGDDDGWTDQRLRLLADEWTACTSAGGMPDYGLASGGGGGPGFRSRDIAATTAPATVGSGTSGTAAVAGSDTAATLSSPLPLVLLPRATPRPFMLHTGHVIVPFLNGRVRETEKRGPNVVIGHGVVLAVDRGVDWRCWESHLTETAAVATRCFERLEREGESVERERVNDWAEKLLNRNT 5616
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1084.1126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KK33_9PHAE2.960e-12057.58C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LEV4_ECTSI5.280e-10357.62C2 domain containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1084contigS-firma_F_contig1084:2..1713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LEV4
PFAMsArfGap,C2
Max annot lvl2759|Eukaryota
KEGG koko:K12486
KEGG Pathwayko04144,map04144
Evalue1.33e-106
EggNOG OGsKOG1030@1|root,KOG1030@2759|Eukaryota
DescriptionGTPase activator activity
COG categoryDTZ
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size1522
Cds size993
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1084.1126.1prot_S-firma_F_contig1084.1126.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1084 267..1449 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.28922-UTR-S-firma_F_contig1084:1..2661622815627.28922-UTR-S-firma_F_contig1084:1..266Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1084 2..266 +
1696949463.4817114-UTR-S-firma_F_contig1084:1..2661696949463.4817114-UTR-S-firma_F_contig1084:1..266Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1084 2..266 +
1622815627.3238447-UTR-S-firma_F_contig1084:1449..17131622815627.3238447-UTR-S-firma_F_contig1084:1449..1713Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1084 1450..1713 +
1696949463.5098984-UTR-S-firma_F_contig1084:1449..17131696949463.5098984-UTR-S-firma_F_contig1084:1449..1713Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1084 1450..1713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.3031085-CDS-S-firma_F_contig1084:266..4131622815627.3031085-CDS-S-firma_F_contig1084:266..413Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1084 267..413 +
1696949463.4919622-CDS-S-firma_F_contig1084:266..4131696949463.4919622-CDS-S-firma_F_contig1084:266..413Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1084 267..413 +
1622815627.3131442-CDS-S-firma_F_contig1084:603..14491622815627.3131442-CDS-S-firma_F_contig1084:603..1449Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1084 604..1449 +
1696949463.5010648-CDS-S-firma_F_contig1084:603..14491696949463.5010648-CDS-S-firma_F_contig1084:603..1449Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1084 604..1449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1084.1126.1

>prot_S-firma_F_contig1084.1126.1 ID=prot_S-firma_F_contig1084.1126.1|Name=mRNA_S-firma_F_contig1084.1126.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=331bp
MDASVGSGRREPGASPPEGMRPPETEEFDLSGWDSLEMTSVLRWPCPLEA
VCKIYTAAITSLTEGLPWIRAADVWHVSSILEHEAVFTPEPNPIDNQAIV
AGDTNAAGGDTESIGTLTVDSGRTVNTRCGDGARFCERVIGKTWSGYPAV
VLRSLRVPGRDEAACTARWLRGNGEDGGGVFGDDEGWTDQRLRLLADEWR
VCTVMGDGDGRPGLGSSVGSPSASPGASRRSVPRPFMLHTGHVIVPFLNG
CLRESESGGNREVFGHGVVLAVDRGVDWRRWESHLIETAVVATRCFERLE
RDGEVAERERVKGWKEELLHSQTRWYSGDP*
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mRNA from alignment at S-firma_F_contig1084:2..1713+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1084.1126.1 ID=mRNA_S-firma_F_contig1084.1126.1|Name=mRNA_S-firma_F_contig1084.1126.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1712bp|location=Sequence derived from alignment at S-firma_F_contig1084:2..1713+ (Sphaerotrichia firma ET2_F female)
ATCACTTTGACAGTATACAGTAACCCGGAGGACGGGGGGGCCGATAGGCC
CCCCCAGTCCGGAGACCCTTGTAGTTTATAATGTTTTTCGGCGTAGGGGG
TATGTATGTATGAATGCGTCCTTACGGCGACCGGAAGAAAGCCACCGCAG
GGCTTCGGTACAAAACAAGCAGTCTCGCAGATTCGTTTTGTGTGCTACTG
TAACAAGCACCCCGGCCTGACACGGGGTCCCTCACGACGTTTGCAGCAGA
GGCATCGAAGGAGCCATGGATGCATCTGTGGGCAGTGGGCGACGCGAACC
AGGCGCGTCACCACCAGAAGGCATGCGTCCACCAGAAACTGAAGAGTTCG
ACCTCTCGGGGTGGGATTCGTTGGAGATGACGTCCGTTCTGCGTTGGCCT
TGCCCCTTGGAGGTAACGGGTTGGGTTGAAGAACAAGCTGCACTGGGTGC
GGAAATGAAGACTCAGAAGTGGCACGTTCTCCGCCGACTTCGACACTTGC
CCAGAAGCCATAATTTCCTAAACATTTCCTTGTGGATGGTATGACAATGA
TTTGTGACCGCTCGCGCCCTCTTCTTCCAATTCTCTCACCTGCGTTTACC
AGGCGGTGTGCAAAATATACACGGCAGCCATCACATCCCTCACGGAGGGC
TTGCCCTGGATTCGGGCGGCGGACGTGTGGCACGTATCTTCCATTCTCGA
ACACGAGGCAGTATTCACGCCCGAGCCAAACCCAATCGACAACCAAGCCA
TCGTTGCCGGCGACACCAACGCCGCCGGCGGAGACACGGAAAGCATCGGC
ACCTTAACCGTTGATTCTGGGCGGACCGTCAACACCCGCTGCGGCGACGG
CGCGCGCTTCTGCGAGCGGGTAATCGGCAAGACATGGTCCGGCTACCCTG
CCGTTGTCCTCAGGTCGCTGCGGGTGCCGGGCAGGGATGAGGCAGCCTGC
ACCGCCCGCTGGCTGCGCGGGAACGGCGAGGACGGTGGAGGCGTGTTCGG
GGACGATGAGGGATGGACAGACCAACGCCTGCGCCTGTTGGCAGACGAGT
GGCGAGTGTGTACGGTGATGGGTGACGGGGACGGTCGTCCCGGTCTGGGT
TCTTCCGTTGGATCACCGTCAGCATCCCCAGGGGCGTCGCGTCGATCGGT
ACCGCGACCGTTCATGTTGCACACCGGACACGTGATCGTGCCCTTCTTGA
ACGGCTGCTTGCGGGAATCGGAAAGCGGAGGGAACAGAGAGGTCTTCGGG
CATGGGGTGGTTCTTGCGGTGGATCGCGGCGTAGACTGGCGGCGATGGGA
GTCCCATCTCATAGAGACCGCCGTCGTTGCCACGCGGTGTTTTGAGCGGC
TAGAGCGCGACGGGGAAGTTGCCGAGAGAGAACGCGTCAAGGGTTGGAAG
GAGGAGCTTCTCCATTCGCAAACCAGATGGTATAGCGGCGATCCGTAGGG
GTGGACAAACACAGGTGCTGTGGCGGTTGTGGCGTATCCACTTTTGTTGT
GCCGTTATCTGCGTAGAAGTATGAGGAGCAAAAGTGGGGCAAGTTCAGCG
ATCTTTGGTAGGTCAATCCCTGGGGTATTTGTGCGGAACCTGCGTTTCTG
ATCGTGTGTGGAGCCGCCACGTTCTTTCTTGCCTGGAGAGCGATCAATCA
AGACCAACCCAATGCTTTGTTTTTGGTGTTGGCCGAACCAAACCAACAAA
ACGTTGCGAGCA
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Coding sequence (CDS) from alignment at S-firma_F_contig1084:2..1713+

>mRNA_S-firma_F_contig1084.1126.1 ID=mRNA_S-firma_F_contig1084.1126.1|Name=mRNA_S-firma_F_contig1084.1126.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1986bp|location=Sequence derived from alignment at S-firma_F_contig1084:2..1713+ (Sphaerotrichia firma ET2_F female)
ATGGATGCATCTGTGGGCAGTGGGCGACGCGAACCAGGCGCGTCACCACC
AGAAGGCATGCGTCCACCAGAAACTGAAGAGTTCGACCTCTCGGGGTGGG
ATTCGTTGGAGATGACGTCCGTTCTGCGTTGGCCTTGCCCCTTGGAGATG
GATGCATCTGTGGGCAGTGGGCGACGCGAACCAGGCGCGTCACCACCAGA
AGGCATGCGTCCACCAGAAACTGAAGAGTTCGACCTCTCGGGGTGGGATT
CGTTGGAGATGACGTCCGTTCTGCGTTGGCCTTGCCCCTTGGAGGCGGTG
TGCAAAATATACACGGCAGCCATCACATCCCTCACGGAGGGCTTGCCCTG
GATTCGGGCGGCGGACGTGTGGCACGTATCTTCCATTCTCGAACACGAGG
CAGTATTCACGCCCGAGCCAAACCCAATCGACAACCAAGCCATCGTTGCC
GGCGACACCAACGCCGCCGGCGGAGACACGGAAAGCATCGGCACCTTAAC
CGTTGATTCTGGGCGGACCGTCAACACCCGCTGCGGCGACGGCGCGCGCT
TCTGCGAGCGGGTAATCGGCAAGACATGGTCCGGCTACCCTGCCGTTGTC
CTCAGGTCGCTGCGGGTGCCGGGCAGGGATGAGGCAGCCTGCACCGCCCG
CTGGCTGCGCGGGAACGGCGAGGACGGTGGAGGCGTGTTCGGGGACGATG
AGGGATGGACAGACCAACGCCTGCGCCTGTTGGCAGACGAGTGGCGAGTG
TGTACGGTGATGGGTGACGGGGACGGTCGTCCCGGTCTGGGTTCTTCCGT
TGGATCACCGTCAGCATCCCCAGGGGCGTCGCGTCGATCGGTACCGCGAC
CGTTCATGTTGCACACCGGACACGTGATCGTGCCCTTCTTGAACGGCTGC
TTGCGGGAATCGGAAAGCGGAGGGAACAGAGAGGTCTTCGGGCATGGGGT
GGTTCTTGCGGTGGATCGCGGCGTAGACTGGCGGCGATGGGAGTCCCATC
TCATAGAGACCGCCGTCGTTGCCACGCGGTGTTTTGAGCGGCTAGAGCGC
GACGGGGAAGTTGCCGAGAGAGAACGCGTCAAGGGTTGGAAGGAGGAGCT
TCTCCATTCGCAAACCAGATGGTATAGCGGCGATCCGTAGGCGGTGTGCA
AAATATACACGGCAGCCATCACATCCCTCACGGAGGGCTTGCCCTGGATT
CGGGCGGCGGACGTGTGGCACGTATCTTCCATTCTCGAACACGAGGCAGT
ATTCACGCCCGAGCCAAACCCAATCGACAACCAAGCCATCGTTGCCGGCG
ACACCAACGCCGCCGGCGGAGACACGGAAAGCATCGGCACCTTAACCGTT
GATTCTGGGCGGACCGTCAACACCCGCTGCGGCGACGGCGCGCGCTTCTG
CGAGCGGGTAATCGGCAAGACATGGTCCGGCTACCCTGCCGTTGTCCTCA
GGTCGCTGCGGGTGCCGGGCAGGGATGAGGCAGCCTGCACCGCCCGCTGG
CTGCGCGGGAACGGCGAGGACGGTGGAGGCGTGTTCGGGGACGATGAGGG
ATGGACAGACCAACGCCTGCGCCTGTTGGCAGACGAGTGGCGAGTGTGTA
CGGTGATGGGTGACGGGGACGGTCGTCCCGGTCTGGGTTCTTCCGTTGGA
TCACCGTCAGCATCCCCAGGGGCGTCGCGTCGATCGGTACCGCGACCGTT
CATGTTGCACACCGGACACGTGATCGTGCCCTTCTTGAACGGCTGCTTGC
GGGAATCGGAAAGCGGAGGGAACAGAGAGGTCTTCGGGCATGGGGTGGTT
CTTGCGGTGGATCGCGGCGTAGACTGGCGGCGATGGGAGTCCCATCTCAT
AGAGACCGCCGTCGTTGCCACGCGGTGTTTTGAGCGGCTAGAGCGCGACG
GGGAAGTTGCCGAGAGAGAACGCGTCAAGGGTTGGAAGGAGGAGCTTCTC
CATTCGCAAACCAGATGGTATAGCGGCGATCCGTAG
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