mRNA_S-firma_F_contig1083.1115.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1083.1115.1 vs. uniprot
Match: A0A6H5JI30_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI30_9PHAE) HSP 1 Score: 619 bits (1597), Expect = 1.320e-193 Identity = 505/1198 (42.15%), Postives = 622/1198 (51.92%), Query Frame = 3
Query: 210 GVDNVSASNGGXXDGDTRPAALKEEVEDKQRSSAAKKGLQMLMNPASPIISLTKKFRSRPSRGASLEG--LQALSGMDGSGEFVMTPVGSDAAR-AGDGDGEVSCAGSDD-GSVESGESV--EEGGXXXXXXXXXXXDAGTVVGDAGAAAAKPKRVTKLARGISHGFRRMKKGARPMGASEAMTIGRASLMGGSSDNSYLRAHD--FDGEGARSLSGGWGKGSSSPEGGARG-KIPQNWDLPTTNIPTSAAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMPPPVPPQMQRVLTEPCTAYSSAR--------SLDSPRKEDLAELGGREFGSGDMCRTPAIATATATPGGHSALEQETAAPGPXXRGRPSALE--KSXXXXPKGMWXXXXXXXXXXXXXXXXXXXXGSPRRLRDHFSRSRPHSPQSXXXXXXXXXXXXXXAGRSPGADSLQGSHRSHDEEAGAAPRLHTASEAAAXXXXXXADVCRAKVNLEKIFHDKRISDENIGVPELSNKEQEXXXXXXQQLTALSGPKDATATTTAQVTAQPQLEPHKCVPAAPPSELKYGDRLRLWVRLRSPSRNHHRLAGGSDILNMAADNWQGQRVGGKDSGAGGTPADGVLAAGGGGYVGSLDKVQRVSKKLFKRSELAMIGQPEGN-AAGFATCHFKAVDPENKHRDGDVVRYGDVVLLVDDRNYVWTDNAHLLPGSLRMKPRGSKRQITVAFKPFLAELKADQNDVLPPVVFGPQGLQIMTVDHGHKDSGNRKRRTSSRKGFHALTAFSKKNSGGSNVAGAFLCSDGRGEAIVFEVHLPNASPVGDPSPVVTKVTIHVDEQSQHQAXXXXXXXXXXXXXXXPALSEKPPGVLKSTNAVTSLEAPGRKTTWAGEAPTAPLTPLVNGTGXXXXXXXVDGLHGRGHGSGDIAGSDSGIGVGPEIGRGVVEREREEGEKKRPKSMVA----AKRLLKTVHKRRSSLNHARSGSFAGGILDGRVS-RTNLYSLSASGPGRSPTNAEAASG---GDDE---LSEDGDASSGGEMVMGAFEGLKWGEMVQFKMPAQGEVGPNDPLLTLRLSNRYTATLTSKQLRDNAGLGKFPVKASKMKGPRAVSDPSGDLPTGNGLVYLKCTLTPIVCSEPEESALHARPEKLPPTEADADEQAAGRLGRRFLPRALRTLFPTPGKAVVAKAS 3710
G+ N S SNGG G+ +PA + E + K R + +KKG Q + P SPI L KKFRS+ SRG SL+G L+ALSG+D G+FV+TPVGSD AGD D DD GS SG V EEGG G G+ + +PKR KLARG+S+ RR+ K R +G+SEA N YLRAHD FDG+G RS +GGWG +SPE G R K+PQ+W +P T+ ++ G+PP +P ++ R T+P + S R +S RKEDL E G + +CR A EQE RGRP LE S PKG W SP+R+ + F+R +P SP S GR G D +G A + T++ + +AK+N EKI + SDE I S +DA A A V P CVPAA P ELKYGDRLRL R+ HHR +GGSDI VG G G PA+ + GGGG+VGSL+KVQ+VS KLF+R+E+A+I Q EGN AAGF +CHFKAVDPENK +DGD+VRYGDV+ LVDDRNYVW+DN HLLPGSLRMK RGSKRQI V+FKPFLA LK D N+ LP VVF GLQIMTV++G KD +KRRTS+RK FHALTAFSKKNSG +V GAFLC+DGRGE +VFEVHLPN SP+GDPSPVVTKVT+HVDE+ P L +K +L + V W EA TAPL+ + G G G G A SGI + I +G EK RPKSMV+ R LK HKRRSSL+ R S + G S R + S P SPTN+E + GDDE +SE+G A S G+MV EGL+WG+ V+FKMP +G+ +D L+TLRLSN YTATLTS++LR +AGLGKFPVKA KMKG +A++ SGDLP+GNGLV+LKC LTP CSE + +A + P + G L R R LFP G V A S
Sbjct: 36 GISNTS-SNGGLS-GEVQPAGISEGEDSKNRDTVSKKGFQRWLRPPSPIPGLKKKFRSKRSRGGSLDGQVLRALSGVDREGDFVLTPVGSDGTNYAGDLDTSAGTDALDDAGSDNSGAGVGVEEGGVSAEAVAANLRGGGRGEGE-DRSTGQPKRSIKLARGLSNVARRLTK--RSVGSSEA--------------NIYLRAHDADFDGDGDRSYTGGWGNSPTSPEHGERHRKLPQDWHVPLTS---TSPVTPPLASPPPQADQGRPPRSSTSSRRPSPTTSGEMLMPGLPPQLP-RITRGFTDPGSPGDSRRFEGTVTGVGNESRRKEDLLEKG-----ADGVCRA-------------EAREQEGKPE--VARGRPGLLEGSNSKSLSPKGGWEGIRERHRSRS---------ASPKRV-NPFNR-KPVSPSSTGNGQDQDQTQ----GR--GQDGQEGHTDQATSSFNPASPVTTSATPRSNEVTAPQATSKAKLNAEKILLGRSRSDEVI----------HGHVKRGDSGHPSSVVEDAPA---APVKVSP------CVPAAQPPELKYGDRLRLKARV------HHRPSGGSDIS-----------VGALGEGGAGPPAESAVG-GGGGFVGSLEKVQKVSTKLFRRNEVAVISQSEGNNAAGFTSCHFKAVDPENKKKDGDIVRYGDVIFLVDDRNYVWSDNGHLLPGSLRMKSRGSKRQIAVSFKPFLAPLKLDANNELPAVVFSTHGLQIMTVEYGSKDQNIKKRRTSTRKNFHALTAFSKKNSGNPSVNGAFLCADGRGEGVVFEVHLPNESPIGDPSPVVTKVTVHVDEK--------------------PRLHDKMSYLLPLSTKVHEAH-------WPSEALTAPLSCVA--------------ADGSGTGQGSSA---SGIRLEDGISQG--------SEKPRPKSMVSKVLPVGRKLKKAHKRRSSLSQKRPKSASVGHSRSATSGRGFMVPASIPSPACSPTNSELSRNNLDGDDEELLVSEEGGALSDGDMV----EGLRWGDSVRFKMPDEGQEILDDKLMTLRLSNGYTATLTSEELRKHAGLGKFPVKAIKMKGSQALNQ-SGDLPSGNGLVFLKCMLTPCSCSETDNAAADTGAASVTPL---GQGEVVG-LAERVFHNVSRILFPDAGGKVEASFS 1075
BLAST of mRNA_S-firma_F_contig1083.1115.1 vs. uniprot
Match: D7FMT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT9_ECTSI) HSP 1 Score: 166 bits (421), Expect = 7.830e-41 Identity = 148/391 (37.85%), Postives = 189/391 (48.34%), Query Frame = 3
Query: 219 NVSASNGGXXDGDTRPAALKEEVEDKQRSSAAKKGLQMLMNPASPIISLTKKFRSRPSRGASLEG--LQALSGMDGSGEFVMTPVGSDAAR-AGDGDGEVSCAGSDD-GSVESGESVEEGGXXXXXXXXXXXDAGTVVGDAGAAAAKPKRVTKLARGISHGFRRMKKGARPMGASEAMTIGRASLMGGSSDNSYLRAHD--FDGEGARSLSGGWGKGSSSPEGGARG-KIPQNWDLPTTNIPTSAAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMPPPVPPQMQRVLTEPCTAYSSAR--------SLDSPRKEDLAELGGREFGSGDMCRTPAIATATATPGGHSALEQETAAPGPXXRGRPSALE--KSXXXXPKGMW 1340
N + S+ G G+ +PA + E + + R + +KKG Q + P SPI L KKFRS+ SRG+SL+G L ALSG+D G+FV+TPVGSD AGD D DD GS SG SVEEGG G G+ + +PKR TKLARG+S+ RR+ K R +G+SEAM++GR DNSYLRAHD FDG+G RS +GGW +SPE G R K+PQ+W LP T+ ++ G+PPP P++ R LT+P + R +S RKEDL E GG +CR A EQE RGR LE KS PKG W
Sbjct: 32 NSNTSSNGGLSGEVQPAVISEGEDSRNRDTVSKKGFQRWLRPPSPIPGLKKKFRSKRSRGSSLDGEVLHALSGVDREGDFVLTPVGSDGNNYAGDLDTSAGTDALDDAGSDNSGASVEEGGVSAEAVAANLRGGGRGEGE-DHSTGQPKRATKLARGLSNVARRLTK--RSVGSSEAMSLGR--------DNSYLRAHDADFDGDGPRSFTGGWSNSPTSPEHGERHRKLPQDWHLPLTS---TSPVTPPMASPPPQADQGRPPRSSTSSRRPSPTTSGEMLMPGLPPPRMPRITRGLTDPGSPCDHRRFEGTVTGVGSESRRKEDLLEKGGE-----GVCRA-------------EAREQEGKPE--VARGRRGLLEGSKSKSLSPKGGW 388
BLAST of mRNA_S-firma_F_contig1083.1115.1 vs. uniprot
Match: D7G345_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G345_ECTSI) HSP 1 Score: 157 bits (396), Expect = 1.440e-37 Identity = 143/363 (39.39%), Postives = 175/363 (48.21%), Query Frame = 3
Query: 300 RSSAAKKGLQMLMNPASPIISLTKKFRSRPSRGASLEG--LQALSGMDGSGEFVMTPVGSDAAR-AGDGDGEVSCAGSDD-GSVESGESVEEGGXXXXXXXXXXXDAGTVVGDAGAAAAKPKRVTKLARGISHGFRRMKKGARPMGASEAMTIGRASLMGGSSDNSYLRAHD--FDGEGARSLSGGWGKGSSSPEGGARGKIPQNWDLPTTNIPTSAAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMPPPVPPQMQRVLTE---PCT-----AYSSARSLDSPRKEDLAELGGREFGSGDMCRTPAIATATATPGGHSALEQETAAPGPXXRGRPSALE--KSXXXXPKGMW 1340
R + +KKG Q L+ P SPI L KKFRS+ SRG+SL+G L ALSG+D G+FV+TPVGSD AG D DD GS SG SVEEGG G G+ + +PKR TKLARG+ + RR+ K R +G+SEAM+IGR DNSYLRAHD FDGEG RS +GGW +SPE G R K+PQ+W LP T+ ++ G+PPP P + R LT+ PC ++ +S RKEDL E GG +CR A EQE RGRP LE KS PKG W
Sbjct: 59 RDTVSKKGFQRLLRPPSPIPGLKKKFRSKRSRGSSLDGEVLHALSGVDREGDFVLTPVGSDGNNYAGGLDTSAGTDALDDAGSDNSGASVEEGGVSAEAVAANLRGGGRGKGE-DHSTGQPKRATKLARGLLNVARRLTK--RSVGSSEAMSIGR--------DNSYLRAHDADFDGEGPRSFTGGWSNSPTSPEHGER-KLPQDWHLPLTS---TSPVTPPMASPPPQADQGRPPRSSTGSRRPSPTRSGEILMPGLPPPRMPPITRGLTDLGSPCDHRRFEGTATGVGSESRRKEDLLEKGGE-----GVCRA-------------EAREQEGKPE--VARGRPGLLEGSKSKSLSPKGGW 386 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1083.1115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1083.1115.1 >prot_S-firma_F_contig1083.1115.1 ID=prot_S-firma_F_contig1083.1115.1|Name=mRNA_S-firma_F_contig1083.1115.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=1212bp MDPTVVSQPAGGSRGSNNSSGVDNVSASNGGGGDGDTRPAALKEEVEDKQback to top mRNA from alignment at S-firma_F_contig1083:6745..17852+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1083.1115.1 ID=mRNA_S-firma_F_contig1083.1115.1|Name=mRNA_S-firma_F_contig1083.1115.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=11108bp|location=Sequence derived from alignment at S-firma_F_contig1083:6745..17852+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1083:6745..17852+ >mRNA_S-firma_F_contig1083.1115.1 ID=mRNA_S-firma_F_contig1083.1115.1|Name=mRNA_S-firma_F_contig1083.1115.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=7272bp|location=Sequence derived from alignment at S-firma_F_contig1083:6745..17852+ (Sphaerotrichia firma ET2_F female)back to top |