mRNA_S-firma_F_contig10827.1108.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10827.1108.1
Unique NamemRNA_S-firma_F_contig10827.1108.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10827.1108.1 vs. uniprot
Match: A0A6H5KRH1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRH1_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 1.920e-82
Identity = 160/269 (59.48%), Postives = 175/269 (65.06%), Query Frame = 3 
Query:  225 VLLHAEHITLPRRLLRLPPRSLLPSAGGIDAATLTLRLCGVSASEEGATLAREELVKPLVGRYCDAELLYREQRPGASPSLGG----------QASRPIAVCHIHRRRGVLWRDILQPRPDPKAGFGEHLLSEGLAVLREEVWWGPG-YDAPAPGSTDATAEARTSEA----HHRRSTGGGDARAVRDGDYAKQPFPALKHLLEDRERFVAAERSAELARRGVWELTP--DEGTGRDKTAAGMGGDGVMPAGLKQRSAALVRVFRGFFG 980
            VLLHAEHITLPRRLLRLPPRSLLPSAGG DAAT TLRLCGVSA  EG  LAR ELVKPLVG YCDAELL+REQR  ASPS             Q S P+AVCHIHRRRGVLWRD+LQ R DPKAGFGE+L+S+GLA LREE WW     +   P     TA AR + A     HR  TG   A     GD ++QPFPALK LLEDRE  VAAE  A+ A RG+W+L     EG GRD  AAG          L +  A + RV  G FG
Sbjct:  146 VLLHAEHITLPRRLLRLPPRSLLPSAGGSDAATFTLRLCGVSAESEGVLLARNELVKPLVGFYCDAELLFREQRSAASPSATAGVGFGVGATEQVSGPVAVCHIHRRRGVLWRDMLQSRIDPKAGFGEYLISQGLARLREEQWWAAADRNGLTPAPAVVTAAARPTSAVSAQTHRHRTGA--ASTGEGGDDSEQPFPALKRLLEDREILVAAEGDAKRASRGLWDLPQRGGEGGGRDSAAAG------RAKSLIEGVAGIARVLTGLFG 406
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10827.1108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRH1_9PHAE1.920e-8259.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10827contigS-firma_F_contig10827:50..2232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_005150.1
Exons2
Model size1611
Cds size888
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10827.1108.1prot_S-firma_F_contig10827.1108.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10827 157..1616 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.8528786-UTR-S-firma_F_contig10827:49..1561622815625.8528786-UTR-S-firma_F_contig10827:49..156Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10827 50..156 +
1696949462.602415-UTR-S-firma_F_contig10827:49..1561696949462.602415-UTR-S-firma_F_contig10827:49..156Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10827 50..156 +
1622815625.8991027-UTR-S-firma_F_contig10827:1616..22321622815625.8991027-UTR-S-firma_F_contig10827:1616..2232Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10827 1617..2232 +
1696949462.6420114-UTR-S-firma_F_contig10827:1616..22321696949462.6420114-UTR-S-firma_F_contig10827:1616..2232Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10827 1617..2232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.8648758-CDS-S-firma_F_contig10827:156..5251622815625.8648758-CDS-S-firma_F_contig10827:156..525Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10827 157..525 +
1696949462.6168442-CDS-S-firma_F_contig10827:156..5251696949462.6168442-CDS-S-firma_F_contig10827:156..525Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10827 157..525 +
1622815625.8783884-CDS-S-firma_F_contig10827:1097..16161622815625.8783884-CDS-S-firma_F_contig10827:1097..1616Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10827 1098..1616 +
1696949462.6280077-CDS-S-firma_F_contig10827:1097..16161696949462.6280077-CDS-S-firma_F_contig10827:1097..1616Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10827 1098..1616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10827.1108.1

>prot_S-firma_F_contig10827.1108.1 ID=prot_S-firma_F_contig10827.1108.1|Name=mRNA_S-firma_F_contig10827.1108.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=296bp
MYRRKLQGCRWAPSCIRTAGSLPLSCRAKAPLPPLLTLSVLLHAEHITLP
RRLLRLPPRSLLPSAGGIDAATLTLRLCGVSASEEGATLAREELVKPLVG
RYCDAELLYREQRPGASPSLGGQASRPIAVCHIHRRRGVLWRDILQPRPD
PKAGFGEHLLSEGLAVLREEVWWGPGYDAPAPGSTDATAEARTSEAHHRR
STGGGDARAVRDGDYAKQPFPALKHLLEDRERFVAAERSAELARRGVWEL
TPDEGTGRDKTAAGMGGDGVMPAGLKQRSAALVRVFRGFFGWGGK*
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mRNA from alignment at S-firma_F_contig10827:50..2232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10827.1108.1 ID=mRNA_S-firma_F_contig10827.1108.1|Name=mRNA_S-firma_F_contig10827.1108.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2183bp|location=Sequence derived from alignment at S-firma_F_contig10827:50..2232+ (Sphaerotrichia firma ET2_F female)
GACGGTGGGTGGGATGCCCTTGGCCGTGGCTTGATGTGCCTGGCCGTTGC
GTGTAATGCTGTGCGGTGCGCACAACACACACGTTCCCAACCTTCTGTTT
GTGTGGTATGTATCGTAGGAAATTACAGGGTTGTCGGTGGGCGCCGTCAT
GTATTCGTACCGCTGGCTCGCTACCACTCTCTTGCCGCGCTAAGGCACCT
TTGCCGCCCCTCTTGACCTTGTCAGTACTGCTGCACGCCGAGCACATCAC
CCTCCCCCGGCGGCTCCTTCGCCTGCCACCGAGGTCCCTCCTCCCGAGCG
CCGGCGGCATCGATGCTGCCACCCTCACGCTGAGGCTCTGCGGGGTCTCC
GCCTCAGAGGAGGGCGCTACGCTCGCGCGGGAGGAGCTGGTGAAGCCCTT
GGTCGGACGGTACTGTGACGCCGAGCTGCTGTACCGGGAGCAAAGACCCG
GGGCGTCCCCGAGCTTGGGCGGACAGGTGATCGCAAAGCGGTAGGCATGT
GCAGCGGAAACTACCAGCTCAGGTGCTGGTAGAAGTGTGTTGTTGCAGCT
GCCACTGAGCTTGGGTCAGGTTAACTGTAGGTCTCAAGGTGGACTTAAAG
TGGTCAGCCGTCAGCGTTGACCGCGTAGATCTGGGGAGATGGCTGTGTAC
GGTTTCGCCCACCATGCACGCACGTCGCGTATTTTTTTTCTGTCGCGCGC
TTGTCCAGAGGGGTTCCCTCTCGGGGCATGCATGTGAACGTCGGACCTAG
TCGAATCGGCGGTCTGTTTTGGCGTACGCGAGTGGATCACGGGAATTTGT
TCAGTTGTTCAGAGTCCACCACCCCGACTTGTCTTGTAGCGATCGGTAGT
TTTGCTTGAAGCACGGGGATTTCTTCCGTCACACCAGGCCGCGTGGGTTG
GGGACTGCGAAAAGGAACACACAAGATTTCGACTCGATCTGCGGTCCTCC
GAAGCCTCAGCGCCACCCACTCTCAACGGCTGCAACTGCCTCCGCAAACT
GAACGCTCAACAGTTCTTGGCCCCTTCCACCGCCTCCTTGATCGGCAGGC
TTCCCGGCCGATCGCTGTCTGCCACATCCACCGCCGCAGGGGAGTGCTCT
GGCGGGACATCCTTCAGCCCCGACCCGACCCAAAGGCGGGGTTTGGCGAG
CACCTGCTCTCGGAAGGCCTCGCGGTACTACGGGAGGAAGTGTGGTGGGG
CCCAGGCTACGACGCCCCCGCCCCGGGCTCGACAGACGCAACGGCAGAAG
CGAGGACTTCTGAAGCGCATCATCGCCGGTCGACCGGCGGCGGCGACGCT
CGCGCGGTCAGGGACGGGGACTACGCCAAGCAGCCCTTCCCTGCGCTGAA
GCACCTCCTCGAGGACCGCGAAAGGTTCGTTGCTGCCGAGAGAAGCGCGG
AGCTGGCGAGGAGAGGGGTCTGGGAGTTGACGCCGGACGAGGGTACGGGC
CGAGACAAGACGGCCGCAGGGATGGGTGGGGACGGTGTGATGCCAGCGGG
CTTGAAGCAGCGTTCGGCAGCGCTTGTACGCGTATTCAGGGGTTTCTTTG
GCTGGGGGGGGAAGTGATTGGGGACGGCACCGTATCAGTTCGAGGAGCGC
GTGGGTTGGGAGGGCGGAGTCGCGAATTTTGTGTATGTTGTGACCATGAA
TATGTTCATTGGACGTGAGCTATTGAGGGGGGAGCCCATGGTCACTGATA
GGTTGGGCTACAGGTGCCAATCGTTTTTATGTACCAGCGGTGCAAAATAT
GGTGCATAGGTCCAGGTGACTGTGGCGGCCTCTGAGGTCCACCCTCCTGC
TTGTTTGCCACGCGAGTGTCCTCAACTGTGGACCGCCTGCACTCCGATGA
TGTTCGGAGTATTGGCACTCAGCACGACATAGTCTAGCCGCAGAGACGAT
GGTGCGTGCTTTTGTTAGTGTAGTTTTTCTGACCTTTTTGTGTGTCAGAG
TGCACAGCTTCTACCGGGATGATCCAAGTAGCTTGAACCTACACGTATGT
TCAACAAGGTTTTCATTTCACGCAGTCTACCAGTGTTGCGTTTATCTTGC
GCACAAGTTACGGCCGTAAGTGCCTCTCGACGAACAAGAATAGACCGTAA
CGTTTGTGCACCAGAATGATCGGGAGAGAACGCTCCGGCCCCTCCACCCC
AGTGATGGAAGGGCTGCGTACATACAAATGTGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10827:50..2232+

>mRNA_S-firma_F_contig10827.1108.1 ID=mRNA_S-firma_F_contig10827.1108.1|Name=mRNA_S-firma_F_contig10827.1108.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1776bp|location=Sequence derived from alignment at S-firma_F_contig10827:50..2232+ (Sphaerotrichia firma ET2_F female)
ATGTATCGTAGGAAATTACAGGGTTGTCGGTGGGCGCCGTCATGTATTCG
TACCGCTGGCTCGCTACCACTCTCTTGCCGCGCTAAGGCACCTTTGCCGC
CCCTCTTGACCTTGTCAGTACTGCTGCACGCCGAGCACATCACCCTCCCC
CGGCGGCTCCTTCGCCTGCCACCGAGGTCCCTCCTCCCGAGCGCCGGCGG
CATCGATGCTGCCACCCTCACGCTGAGGCTCTGCGGGGTCTCCGCCTCAG
AGGAGGGCGCTACGCTCGCGCGGGAGGAGCTGGTGAAGCCCTTGGTCGGA
CGGTACTGTGACGCCGAGCTGCTGTACCGGGAGCAAAGACCCGGGGCGTC
CCCGAGCTTGGGCGGACAGATGTATCGTAGGAAATTACAGGGTTGTCGGT
GGGCGCCGTCATGTATTCGTACCGCTGGCTCGCTACCACTCTCTTGCCGC
GCTAAGGCACCTTTGCCGCCCCTCTTGACCTTGTCAGTACTGCTGCACGC
CGAGCACATCACCCTCCCCCGGCGGCTCCTTCGCCTGCCACCGAGGTCCC
TCCTCCCGAGCGCCGGCGGCATCGATGCTGCCACCCTCACGCTGAGGCTC
TGCGGGGTCTCCGCCTCAGAGGAGGGCGCTACGCTCGCGCGGGAGGAGCT
GGTGAAGCCCTTGGTCGGACGGTACTGTGACGCCGAGCTGCTGTACCGGG
AGCAAAGACCCGGGGCGTCCCCGAGCTTGGGCGGACAGGCTTCCCGGCCG
ATCGCTGTCTGCCACATCCACCGCCGCAGGGGAGTGCTCTGGCGGGACAT
CCTTCAGCCCCGACCCGACCCAAAGGCGGGGTTTGGCGAGCACCTGCTCT
CGGAAGGCCTCGCGGTACTACGGGAGGAAGTGTGGTGGGGCCCAGGCTAC
GACGCCCCCGCCCCGGGCTCGACAGACGCAACGGCAGAAGCGAGGACTTC
TGAAGCGCATCATCGCCGGTCGACCGGCGGCGGCGACGCTCGCGCGGTCA
GGGACGGGGACTACGCCAAGCAGCCCTTCCCTGCGCTGAAGCACCTCCTC
GAGGACCGCGAAAGGTTCGTTGCTGCCGAGAGAAGCGCGGAGCTGGCGAG
GAGAGGGGTCTGGGAGTTGACGCCGGACGAGGGTACGGGCCGAGACAAGA
CGGCCGCAGGGATGGGTGGGGACGGTGTGATGCCAGCGGGCTTGAAGCAG
CGTTCGGCAGCGCTTGTACGCGTATTCAGGGGTTTCTTTGGCTGGGGGGG
GAAGTGAGCTTCCCGGCCGATCGCTGTCTGCCACATCCACCGCCGCAGGG
GAGTGCTCTGGCGGGACATCCTTCAGCCCCGACCCGACCCAAAGGCGGGG
TTTGGCGAGCACCTGCTCTCGGAAGGCCTCGCGGTACTACGGGAGGAAGT
GTGGTGGGGCCCAGGCTACGACGCCCCCGCCCCGGGCTCGACAGACGCAA
CGGCAGAAGCGAGGACTTCTGAAGCGCATCATCGCCGGTCGACCGGCGGC
GGCGACGCTCGCGCGGTCAGGGACGGGGACTACGCCAAGCAGCCCTTCCC
TGCGCTGAAGCACCTCCTCGAGGACCGCGAAAGGTTCGTTGCTGCCGAGA
GAAGCGCGGAGCTGGCGAGGAGAGGGGTCTGGGAGTTGACGCCGGACGAG
GGTACGGGCCGAGACAAGACGGCCGCAGGGATGGGTGGGGACGGTGTGAT
GCCAGCGGGCTTGAAGCAGCGTTCGGCAGCGCTTGTACGCGTATTCAGGG
GTTTCTTTGGCTGGGGGGGGAAGTGA
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