mRNA_S-firma_F_contig10816.1092.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A4P9ZUX7_9FUNG (Ribonuclease Z n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZUX7_9FUNG) HSP 1 Score: 99.8 bits (247), Expect = 8.960e-22 Identity = 52/130 (40.00%), Postives = 76/130 (58.46%), Query Frame = 1
Query: 1 VSYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFIGADAALVV------CLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
++Y+CT P VPG+F A+ALGVP GRL GQL + + L DGTV++P+Q P PG V V CP++A++D ++ P + + D+ V CL+H GV+ D +YQA+M RF H+
Sbjct: 219 LTYICTGPSVPGKFDVKAAEALGVPKGRLRGQLVRGETIVLPDGTVISPDQCVHPGRPGAVFIVCDCPSVAYIDSLIKQPGFKPYYRDDSTHVTSDRSVDCLIHNTGPGVLQDPRYQAWMHRFGAETHHL 348
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A7S0BHQ7_9RHOD (Ribonuclease Z (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BHQ7_9RHOD) HSP 1 Score: 98.6 bits (244), Expect = 1.410e-21 Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 1
Query: 1 VSYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWA-KFIGADAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
+ Y+C + +PG+F P KA ALG+P G LFG+L+K VTL DG V+ P QV P TPG +V +V CP ++++ +++ + K++ +C++H V+ D +Y ++MA F HI
Sbjct: 166 ICYVCKIKDIPGKFDPQKASALGIPRGPLFGKLTKGEEVTLPDGRVIAPGQVILPPTPGPIVMIVCCPDVSYIASLISESGLSSKYLNPSMERNLCIIHFSTLSVLSDQRYSSWMASFGGNATHI 290
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A059LHW6_9CHLO (Ribonuclease Z (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LHW6_9CHLO) HSP 1 Score: 96.7 bits (239), Expect = 2.860e-21 Identity = 51/118 (43.22%), Postives = 75/118 (63.56%), Query Frame = 1
Query: 4 SYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFIG--ADAALVVCLVHLGPRGVVLDGKYQAFMARF 351
+Y+C + VPGRF P KA +LGVP G+ +GQL + VT +G VTP +V +P TPG VV V+ CP++A+ + A P + +G A AA + C+VHL P+ VV D +Y ++ + F
Sbjct: 232 AYLCRLADVPGRFLPQKAASLGVPRGKAYGQLVRGESVTAANGQTVTPAEVCEPSTPGPVVLVMDCPSMAYFQSLRAQPDLERCLGDPAWAARLACVVHLAPKEVVEDERYASWASGF 349
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A8H7PSE7_9FUNG (Ribonuclease Z n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PSE7_9FUNG) HSP 1 Score: 97.8 bits (242), Expect = 4.250e-21 Identity = 49/125 (39.20%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 1 VSYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFIGA-DAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
+SY+C P V G+F+ A ALG+ PG ++G+L + +TLDDGTVVTP++V DP PG V V CP+ ++ + + ++++ GA + + + +VH+ +GV+ + +YQ +M FP VQHI
Sbjct: 336 ISYICRGPEVKGKFNKAAAVALGIKPGPMYGKLHRGESITLDDGTVVTPDRVCDPSIPGHVFIVADCPSPEYIQSLTSSSLFSEYQGASNGSRLSVIVHMLGKGVLENQQYQEWMNTFPSTVQHI 460
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A507DNV9_9FUNG (Ribonuclease Z n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DNV9_9FUNG) HSP 1 Score: 97.1 bits (240), Expect = 7.930e-21 Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 1
Query: 1 VSYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAK-FIGADAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHIFVRR 384
+ Y+ P + G+FHP KAK LG PG FG L +PVTLDDGTV+ P+QV D D PG + ++ CP +++ + + A+ F G V ++H+ V+ +Y+ +M FP+ QH+ + R
Sbjct: 305 ICYIAQGPTMKGKFHPQKAKGLGAQPGNQFGMLYNRIPVTLDDGTVIYPDQVNDADVPGSIFIIIECPNALYIESLTKNSAFEPHFRGNTQNEVKVIIHILGDDVLDHVQYRNWMNEFPEDTQHLIISR 433
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A8H7BQ21_9FUNG (Ribonuclease Z n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BQ21_9FUNG) HSP 1 Score: 94.4 bits (233), Expect = 6.910e-20 Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query: 1 VSYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFIGADAA-LVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
+SY+C P + G+F+ A ALG+ PG ++G+L K VTL+DG V+TP+QV P PG + +V CP +++VD +++ P++ K+ D +VHL V+ D +Y+ +M RF +HI
Sbjct: 274 ISYICRGPTLLGKFNKQAALALGINPGPIYGKLHKGETVTLEDGRVITPDQVSSPPVPGYLFLIVDCPDISYVDNLISSPSFEKYQTIDETDSPSVIVHLVGDDVLQDARYRQWMNRFNPKTEHI 398
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A1Y2DWP0_9FUNG (Ribonuclease Z n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2DWP0_9FUNG) HSP 1 Score: 92.4 bits (228), Expect = 3.280e-19 Identity = 54/131 (41.22%), Postives = 71/131 (54.20%), Query Frame = 1
Query: 7 YMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVV---------AHPAWAKFIGADAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
Y+C IVPG+F+P KAKALGV PG+ FG LS+ VT DGTVV PEQVK+PD + VV CP+L H+ ++ HP I LG ++ D YQ++M +FP+ HI
Sbjct: 285 YICQGHIVPGKFNPQKAKALGVIPGKQFGLLSRGECVTTSDGTVVRPEQVKEPDKISSIFIVVDCPSLDHIPSLIQQDCFRDPKVHPYTRNIIHI----------LGDPLILKDPSYQSWMKQFPENCNHI 405
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A0D2N138_9CHLO (Ribonuclease Z n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N138_9CHLO) HSP 1 Score: 92.0 bits (227), Expect = 4.490e-19 Identity = 54/142 (38.03%), Postives = 69/142 (48.59%), Query Frame = 1
Query: 7 YMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHP--------------------AWAKFIGADAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
Y+C + VPG+F P KAKALGVPPG L+GQL ++ PVT G V P V P PG ++ +V CPT AH+ V P A A + ++HL P V YQAFMARF +H+
Sbjct: 263 YLCELADVPGKFDPVKAKALGVPPGPLYGQLQRDTPVTTPAGVTVQPSDVMSPAVPGPLLLIVDCPTAAHLAAVEGAPQVQRLQXXXXXXXXXXXXXXATAAGAQQQPGRELFVIHLTPADVSESAAYQAFMARFGPACRHV 404
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A2P6VBD5_9CHLO (Ribonuclease Z n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VBD5_9CHLO) HSP 1 Score: 89.4 bits (220), Expect = 3.870e-18 Identity = 53/125 (42.40%), Postives = 70/125 (56.00%), Query Frame = 1
Query: 7 YMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFI-GADAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHIFV 378
Y+C +P VPG+F P KA ALGVP G L+G+L K VT +G VV P V +P TPG VV VV CP+ A + + A P G+ V +VHL P V Y+A++A F +H+ V
Sbjct: 229 YICELPDVPGKFMPQKAAALGVPRGPLYGKLVKGEEVTAANGQVVRPADVMEPATPGPVVLVVDCPSAAFLPALAAAPQLKDCSSGSKRDKVAVVVHLSPLEVTRLPAYRAWLACFAPEAKHLLV 353
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Match: A0A1X2GSV3_9FUNG (Ribonuclease Z n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GSV3_9FUNG) HSP 1 Score: 88.6 bits (218), Expect = 7.210e-18 Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 1 VSYMCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKDPDTPGQVVGVVACPTLAHVDGVVAHPAWAKFIGADAALVVCLVHLGPRGVVLDGKYQAFMARFPDGVQHI 372
+SY+C +P G F P +A LGV PG LFGQL + VTL+DGTVVT +QV PD PG + V+ CP +++D +V+ A+ + + V+ VHL V+ + Y+ +M F HI
Sbjct: 252 ISYICRLPTRRGTFLPKEAIKLGVKPGPLFGQLQRGGSVTLEDGTVVTHDQVCQPDIPGPLFMVIDCPDPSYIDELVSATAFQPYYNDENVKVI--VHLTSDEVLAEPSYRQWMNNFHQNTDHI 373 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10816.1092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10816.1092.1 >prot_S-firma_F_contig10816.1092.1 ID=prot_S-firma_F_contig10816.1092.1|Name=mRNA_S-firma_F_contig10816.1092.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=129bp MCTVPIVPGRFHPDKAKALGVPPGRLFGQLSKNMPVTLDDGTVVTPEQVKback to top mRNA from alignment at S-firma_F_contig10816:3614..4009- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10816.1092.1 ID=mRNA_S-firma_F_contig10816.1092.1|Name=mRNA_S-firma_F_contig10816.1092.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=396bp|location=Sequence derived from alignment at S-firma_F_contig10816:3614..4009- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10816:3614..4009- >mRNA_S-firma_F_contig10816.1092.1 ID=mRNA_S-firma_F_contig10816.1092.1|Name=mRNA_S-firma_F_contig10816.1092.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=774bp|location=Sequence derived from alignment at S-firma_F_contig10816:3614..4009- (Sphaerotrichia firma ET2_F female)back to top |