mRNA_S-firma_F_contig10814.1090.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10814.1090.1 vs. uniprot
Match: D8LNE8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE8_ECTSI) HSP 1 Score: 448 bits (1153), Expect = 1.080e-151 Identity = 219/267 (82.02%), Postives = 244/267 (91.39%), Query Frame = 1
Query: 124 AILSKSEHMAALFMEYSVALRAIDIQWGWTALHCAANVGMDNVTKSLLGKRASPYAKSKTGQTPLDVARDGRQLKTAALLEAFLRAEPAHEVLAEAGANIWQGSHEAAHPVWASDQGFECVLTIADPRFPDKKLGWLDDDGDIDHLRVEAEVDEEDTTPRPWNNVAQYTRIMVSFLYKAVRRRKKILIHCRHGCSTSAAVLAVYRLLKHGVGVRNTLSAIADARGDSMDLSPAMAAGLFQLQEDFAKEKERRLVERARMAPILSLGF 924
AILSKSE MAALFM+YSVAL+A D+QWGWTALHCAA+VGM V ++LLGKRASPYA+SK GQTPLDVA RQ+KT ALLEAFLRAEPAHEV+AEAGANIWQGSH AAHPVWASDQGFEC+L+I DPRFPDKKLGWL+DDGD+ HLRVEAEVD+EDT+PR WNN+AQ+TR+++SFLY AVRRRKKIL+HCR+G STS A+L YRLLKHGVGVRNTLS IA ARG+SMDLSPAMAAGL QLQEDFAKEKE+RLVERAR APILSLGF
Sbjct: 378 AILSKSEVMAALFMDYSVALQATDVQWGWTALHCAAHVGMVKVVENLLGKRASPYAESKIGQTPLDVASRARQIKTTALLEAFLRAEPAHEVIAEAGANIWQGSHAAAHPVWASDQGFECILSIVDPRFPDKKLGWLEDDGDVRHLRVEAEVDDEDTSPRAWNNIAQHTRVIISFLYTAVRRRKKILVHCRNGRSTSVAMLTAYRLLKHGVGVRNTLSTIARARGESMDLSPAMAAGLQQLQEDFAKEKEKRLVERARTAPILSLGF 644
BLAST of mRNA_S-firma_F_contig10814.1090.1 vs. uniprot
Match: A0A836CC25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC25_9STRA) HSP 1 Score: 140 bits (352), Expect = 1.230e-33 Identity = 98/256 (38.28%), Postives = 129/256 (50.39%), Query Frame = 1
Query: 1 QMETPLMVAARRGVTASVRWLLLRG--AKIDVLDRARRTPLMHAILSKSEHMAALFMEYSVALRAIDIQWGWTALHCAANVGMDNVTKSLLGKRASPYAKSKTGQTPLDVARDGRQLKTAALLEAFLRAEPAHEVLA-EAGANIWQGSHEAAHPVWASDQGFECVLTIAD--PRFPDKKLGWL-DDDGDIDHLRVEAEVDEEDTTP--RPWNNV---AQYTRIMVSFLYKAVRRRKKILIHCRHGCSTSAAVLAVY 735
+METPL+ A RRG + LLL A + LDR RR + A+++ S AL ++ ++ D QWGWT LH AA+ G LL +RAS YA S GQTPL VA +Q A LL A EPAH V+ + IW GS AA WA D+GF VL++ D + + + WL + D HL +EA + R W V AQ V+F+ A RRR ++L+HC G A V A Y
Sbjct: 237 RMETPLLHAVRRGSASGAAALLLPPWRAALGALDRGRRGVVALAVMAGSMECLALALDNGASVHKKDAQWGWTPLHHAAHSGALQAISLLLSRRASIYALSDEGQTPLQVAEGAKQEAAARLLRARAADEPAHVVMVLDNSTEIWLGSCAAARAGWAQDRGFTAVLSVNDGGEEWSQRAVAWLAEPDCSTAHLLIEAPLGGAGGAKGGRAWGGVCGSAQGLASAVAFIDAARRRRARVLLHCSDGRCACAGVWAAY 492
BLAST of mRNA_S-firma_F_contig10814.1090.1 vs. uniprot
Match: UPI001D1A4692 (LOW QUALITY PROTEIN: ankyrin-1-like n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI001D1A4692) HSP 1 Score: 62.4 bits (150), Expect = 2.570e-7 Identity = 65/199 (32.66%), Postives = 90/199 (45.23%), Query Frame = 1
Query: 1 QMETPLMVAARRGVTASVRWLLLRGAKIDVLDRARRTPLMHAILSKSEHMAALFMEYSVALRAIDIQWGWTALHCAANVGMDNVTKSLLGKRASPYAKSKTGQTPLDVARDGRQLKTAALLEAFLRAEPAHEVLAEAGANIWQGSHEAAHPVWAS-----DQGF-ECVLTI-ADPRFPDKKLGWLDDDGDIDHLRVEAE 576
+ ETPL++AA G TA+ WLL RGA D TPL A + + L + + A + + TALH AA G V + LL A P + TPL + G L+ LL EAGAN+ G+ A P+ + + GF +C+L ADP PD+ LG L I+ + V+AE
Sbjct: 57 ERETPLLLAATFGHTATAAWLLERGASARAPDVDGETPLQWAAYNGDRDLVMLLLYKGADVGAANPRG--TALHVAAMRGCPEVVRVLLRHGADPNKVASRVFTPLVPSLLGGSLQCMKLL-------------IEAGANVHAGAFSGATPLLLACSHRGNVGFVKCLLKAGADPNLPDE-LGRLP----IEIVAVQAE 235
BLAST of mRNA_S-firma_F_contig10814.1090.1 vs. uniprot
Match: F2DTC3_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2DTC3_HORVV) HSP 1 Score: 60.1 bits (144), Expect = 1.780e-6 Identity = 61/185 (32.97%), Postives = 83/185 (44.86%), Query Frame = 1
Query: 1 QMETPLMVAARRGVTASVRWLLLRGAKIDVLDRARRTPLMHAILSKSEHMAALFMEYSVALRAIDIQWGWTALHCAANVGMDNVTKSLLGKRASPYAKSKTGQTPLDVARDGRQLKTAALLEAFLRAEPAHEVLAEAGANIWQGSHEAAHPVWAS-----DQGF-ECVLTI-ADPRFPDKKLGWL 534
+ ETPL++AA G TA+ WLL RGA D TPL A + +A L + + A + + TALH AA G V + LL A P + TPL + G ++ LL EAGAN+ G A P+ + + GF +C+L ADP PD+ LG L
Sbjct: 110 ERETPLLLAATFGHTATAAWLLERGASPRAPDVDGETPLHWAAYNGDRDLAMLLLYKGADVSAANPRG--TALHVAAMRGCPEVVRVLLRHGADPNKVASRVFTPLVSSLLGGSVECMKLL-------------IEAGANVHAGGFTGATPLLLACSRRGNVGFVKCLLKAGADPNLPDE-LGRL 278
BLAST of mRNA_S-firma_F_contig10814.1090.1 vs. uniprot
Match: UPI001E1DFA6A (uncharacterized protein LOC123551165 isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DFA6A) HSP 1 Score: 60.1 bits (144), Expect = 2.680e-6 Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 1
Query: 13 PLMVAARRGVTASVRWLLLRGAKIDVLDRARRTPLMHAILSKSEHMAALFMEYSVALRAIDIQWGWTALHCAANVGMDNVTKSLLGKRASPYAKSKTGQTPLDVA 327
PL+VAAR+G+TA+VR +L GA V + A+ T L AIL K E + + +E L ++ T LH A ++ + K LL K AS K G P+ +A
Sbjct: 1718 PLIVAARKGLTAAVRCMLNSGADTGVQNTAKMTALHKAILYKHEDVIEMLIEAGAPLNIKGGEFKRTPLHLAVDLENMKLVKLLLRKHASLTVKDHRGYYPIHIA 1822
BLAST of mRNA_S-firma_F_contig10814.1090.1 vs. uniprot
Match: A0A3B6GN76_WHEAT (Uncharacterized protein n=16 Tax=Triticinae TaxID=1648030 RepID=A0A3B6GN76_WHEAT) HSP 1 Score: 58.2 bits (139), Expect = 7.920e-6 Identity = 61/185 (32.97%), Postives = 83/185 (44.86%), Query Frame = 1
Query: 1 QMETPLMVAARRGVTASVRWLLLRGAKIDVLDRARRTPLMHAILSKSEHMAALFMEYSVALRAIDIQWGWTALHCAANVGMDNVTKSLLGKRASPYAKSKTGQTPLDVARDGRQLKTAALLEAFLRAEPAHEVLAEAGANIWQGSHEAAHPVWAS-----DQGF-ECVLTI-ADPRFPDKKLGWL 534
+ ETPL++AA G TA+ WLL RGA D TPL A + +A L + + A + + TALH AA G V + LL A P + TPL + G ++ LL EAGAN+ G A P+ + + GF +C+L ADP PD+ LG L
Sbjct: 110 ERETPLLLAATFGHTATAAWLLERGASPRAPDVDGETPLHWAAYNGDRDLAMLLLCKGADVGATNPRG--TALHVAAMRGFPEVIRVLLRHGADPNKFASRVFTPLVSSLLGGSVECMKLL-------------IEAGANVHAGGFSGATPLLLACSRRGNIGFVKCLLKAGADPNVPDE-LGRL 278 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10814.1090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10814.1090.1 >prot_S-firma_F_contig10814.1090.1 ID=prot_S-firma_F_contig10814.1090.1|Name=mRNA_S-firma_F_contig10814.1090.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=308bp METPLMVAARRGVTASVRWLLLRGAKIDVLDRARRTPLMHAILSKSEHMAback to top mRNA from alignment at S-firma_F_contig10814:232..3700+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10814.1090.1 ID=mRNA_S-firma_F_contig10814.1090.1|Name=mRNA_S-firma_F_contig10814.1090.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3469bp|location=Sequence derived from alignment at S-firma_F_contig10814:232..3700+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10814:232..3700+ >mRNA_S-firma_F_contig10814.1090.1 ID=mRNA_S-firma_F_contig10814.1090.1|Name=mRNA_S-firma_F_contig10814.1090.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1848bp|location=Sequence derived from alignment at S-firma_F_contig10814:232..3700+ (Sphaerotrichia firma ET2_F female)back to top |