mRNA_S-firma_F_contig1080.1077.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1080.1077.1
Unique NamemRNA_S-firma_F_contig1080.1077.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1080.1077.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 511 bits (1316), Expect = 1.070e-168
Identity = 268/397 (67.51%), Postives = 300/397 (75.57%), Query Frame = 1 
Query:   16 MMGKKMSVAAMAGVTVALFASTITLTAAAVCSNGLEGIQSDSLDVCCPEACGVCGGLGCTPANTSTLTSADCCATEVVESGVFCDVSGVAPCIVTTAAAPATSVCVNGQTGVQDPNTDVCCPLECGDFCGGTGCGTIPGVEASQCCSTIIMNSGAVCSDTVAPPCTVVASVADNTTTCSNGLSGIEDPVNLICCNAACGQCGGAGCGSIPGLAGTDCCSDEIEATAQLCSVSLAAPCVVDPPAFVASMCPNGIAGVQDGSVCCAEACNGQCGGVGCGSIVGTAGASDCCSATILQTGVPCGVGVAAPCVMQNGTFTNAPAAAPTIPP---PGATLAXXXXXXXXXXXXXXXXXXXGGVVGATTAPTAGSRDFAFTEGPTIAGDVNGDNLVNSADTGI 1197
            M+GK  S  A+  V +AL   T+T  A AVCSNGLEGIQS SLDVCC E C VCGG+ CTPANTS+LTSADCCATE+VESG FCDVS  APCI+TTAAA   SVC NGQTGV DP+TDVCCPLECGD CGG GCG+IPGV A+QCCS++I+ SGAVCSDTV+ PC V A+ ADN+TTCSNG+ GIEDPVNLICC+AACG CGG GCG++ GL G DCCS+EI     LCSV+  APCV+DPP FVAS CPNG+AGVQDGSVCCAE CNG CGG GCGSIVGT GA DCCS TIL TGV C  GV APC+M NGT+T+AP AAPT PP   PG T+A                    G V AT AP AG+R+F FT+ PT   DVNGD LVNSADTGI
Sbjct:    1 MLGKATSFTALVCVAIALLVGTMT-PAGAVCSNGLEGIQSTSLDVCCVEGCEVCGGVDCTPANTSSLTSADCCATEIVESGTFCDVSMAAPCIITTAAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCCSEEIAVVNDLCSVTNEAPCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIMLNGTYTDAPMAAPTFPPAAAPGTTVAP-------------------GAVAATEAPVAGTREFRFTQAPTQLLDVNGDGLVNSADTGI 377
[Close]
BLAST of mRNA_S-firma_F_contig1080.1077.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 2.040e-109
Identity = 204/383 (53.26%), Postives = 239/383 (62.40%), Query Frame = 1 
Query:   28 KMSVAAMAGVTVALFASTITLTAAAVCSNGLEGIQSDSLDVCCPEACGVCGGLGCTPANTSTLTSADCCATEVVESGVFCDVSGVAPCIVTTAAAPATSVCVNGQTGVQDPNTDVCCPLECGDFCGGTGCGTIPGVEASQCCSTIIMNSGAVCSDTVAPPCTVVA-SVADNTTTCSNGLSGIEDPVNLICCNAACGQCGGAGCGSIPGLAGTDCCSDEIEATAQLCSVSLAAPCVVDPPAFVASMCPNGIAGVQDGSVCCAEACNGQCGGVGCGSIVGTAGASDCCSATILQTGVPCGVGVAAPCVMQNGTFTNAPAAAPTIPP-------PGATLAXXXXXXXXXXXXXXXXXXXGGVVGATTAPTAGSRDFAFTEG-PTIA 1149
            KM+ AA+ GV +AL  S      A  C+ G+ G++S SLDVCC   CG CGG+GCTPANTS+LT+ DCCATE+ ESGV C  +GVAPCI++T AA A SVC NGQTGVQDP+TDVCCPLECG+ CGG GCGTIPGV+ASQCC++II  SG VC D +  PCT VA +VAD+   CSNG  GIE+    +CC+ AC  CGG+ CG++ GL G DCC+  I A  +LCS   +APCVVDPP   AS C NG+AGV  GSVCCAE CNG            T GA DCCSATIL   + C     APCVM  GTFT APA  PT+         PG T+                          T APT GSRD  F  G PT A
Sbjct:    3 KMNFAALLGVVLALAGSV----GAQTCAGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCILSTEAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPCTQVAVAVADSV--CSNGFPGIENEDATVCCDPACVVCGGSTCGNVAGLTGADCCTGTIIANDELCSEKGSAPCVVDPPEVTASTCANGLAGVSSGSVCCAEVCNGVXXXXXXXXXXXTNGAEDCCSATILAANIACVD--TAPCVMVEGTFTPAPAVVPTVAATTTAPLAPGETVTMAPTP-----------------TSQTAAPTPGSRDLDFGTGVPTPA 360
[Close]
BLAST of mRNA_S-firma_F_contig1080.1077.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 1.370e-80
Identity = 136/201 (67.66%), Postives = 158/201 (78.61%), Query Frame = 1 
Query:   16 MMGKKMSVAAMAGVTVALFASTITLTAAAVCSNGLEGIQSDSLDVCCPEACGVCGGLGCTPANTSTLTSADCCATEVVESGVFCDVSGVAPCIVTTAAAPATSVCVNGQTGVQDPNTDVCCPLECGDFCGGTGCGTIPGVEASQCCSTIIMNSGAVCSDTVAPPCTVVASVADNTTTCSNGLSGIEDPVNLICCNAACGQC 618
            M+GK  S  A+  V +AL   T+T  A AVCSNGLEGIQS SLD CC E CG+CGG+GCTPANTS+LTSADCCATE++ESG  C+VS  APCI+TTAAA   SVC NGQTGVQDP+TDVCCPL CGD CGG GCG++ GV+A+QCCS +I+ SGAVCSDTV+ PC V A+ ADN+TTCSNG+ GIEDPVNLI     C  C
Sbjct:    1 MLGKATSFTALVCVAIALLVGTMT-PAGAVCSNGLEGIQSTSLDACCVEECGLCGGVGCTPANTSSLTSADCCATEIIESGTLCEVSMAAPCIITTAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLIWYVWMCSAC 200
[Close]
BLAST of mRNA_S-firma_F_contig1080.1077.1 vs. uniprot
Match: D8LML4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.500e-48
Identity = 101/159 (63.52%), Postives = 110/159 (69.18%), Query Frame = 1 
Query:  730 VDPPAFVASMCPNGIAGVQDGSVCCAEACNGQCGGVGCGSIVGTAGASDCCSATILQTGVPCGVGVAAPCVMQNGTFTNAPAAAPTIPP---PGATLAXXXXXXXXXXXXXXXXXXXGGVVGATTAPTAGSRDFAFTEGPTIAGDVNGDNLVNSADTGI 1197
            +DPP FVAS CPNGIAGVQDGSVCCAE CNG CGG GCGSIVGT GA DCCS+TIL TGV C VGV APC+M NGT+T+AP AAPT PP   PG T+A                    G V  T AP AG+R+F FT+ PT   DVNGD LVNSADTGI
Sbjct:    1 MDPPDFVASTCPNGIAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAPMAAPTFPPVAAPGTTVAP-------------------GAVATTEAPLAGTREFQFTQAPTQLLDVNGDGLVNSADTGI 140
[Close]
BLAST of mRNA_S-firma_F_contig1080.1077.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.530e-39
Identity = 117/278 (42.09%), Postives = 143/278 (51.44%), Query Frame = 1 
Query:   94 AAAVCSNGLEGIQSDSLDVCCPEACGVCGGLGCTPANTSTLTSADCCATEVVES--GVFCDVSGVAPCIVT-------------TAAAPATSVCVNGQTGVQDPNTDVCCPLECGDFCGGTGCGTIPGVEASQ-CCSTIIMNSGAVCSD--------TVAPPCTVVASVAD-NTTTCSNGLSGIEDPVNLICCNAACGQCGGAGCGSIPGLAGTD-CCSDEIEATAQLCSVSLAAPCVVD--PPA-----------FVASMCPNGIAGVQDGSVCCAE 810
            A + CSNG+ G+     DVCC EACG CGG GC  A   T  ++DCC   + E   GVFC   G APC++              TAA  A S C NG  G QD    +CC   CG  CGG GCGTIPG   S  CC + I+ +G VC +        T AP      + A   T+TCSNG+ G +D     CC A CGQCGG GCGS+PG AG   CCS ++E    LCS +  +PCV+D   PA            V S C NG+ G Q+  +CC E
Sbjct:  288 APSTCSNGIPGVSDG--DVCCLEACGQCGGEGC-GAIAGTNGASDCCPDTIKEESGGVFC---GEAPCVMAGFTPSPLNPAFDGTAAPVAPSTCSNGIAGYQDGA--ICCLEICGR-CGGDGCGTIPGTGGSDNCCPSTILAAGVVCGEAPCIIEGYTPAPAVVGGGTTAPYGTSTCSNGILGYQD--GPACCAANCGQCGGGGCGSVPGTAGASACCSSDVELAGNLCSATGVSPCVIDNYTPAPVVPDYGSAAPVVPSNCSNGLPGYQNNDICCLE 554
[Close]
BLAST of mRNA_S-firma_F_contig1080.1077.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.400e-38
Identity = 97/225 (43.11%), Postives = 126/225 (56.00%), Query Frame = 1 
Query:   97 AAVCSNGLEGIQSDSLDVCCPEACGVCGGLGCTPANTST-LTSADCCATEVVESGVFCDVSGVAPCIVTTAAAPA---TSVCVNGQTGVQDPNTDVCCPLECGDFCGGTGC---GTIPGVEASQCCSTIIMNSGAVCSDTVAPPCTVVASVADNTT---TCSNGLSGIEDPVNLICCNAACGQCGGAGC---GSIPGLAGTDCCSDEIEATAQLCSVSLAAPCVV 732
            A  CSNGLEGI ++ + VCCP ACG CGG GC  +  +  L  + CC   V  S  +CD +  APCI+ +   P+    + C NG  G+ D N  VCCPL CG  CGGTGC   G   G++ S CC   I  SG  C +T   PC + +S A + T   TCSNG+ GI D   ++CC   CGQCGGAGC   G+  GL    CC   I+A+ + C  +  APC++
Sbjct:  190 ARTCSNGLEGIDANGV-VCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYCDETNEAPCIIGSRPTPSPTSANTCSNGLEGI-DGNGVVCCPLGCGQ-CGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGSSPAPSPTPSETCSNGVEGI-DGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCII 410
[Close]
BLAST of mRNA_S-firma_F_contig1080.1077.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 2.810e-37
Identity = 128/393 (32.57%), Postives = 160/393 (40.71%), Query Frame = 1 
Query:  103 VCSNGLEGIQSDSLDVCCPEACGVCGGLGCTPANTSTLTSADCCATEVVESGVFCDVSGVAPCIVTTAAAPATSVCVNGQTGVQDPNTDVCCPLECGDFCGGTGCGTIPG-VEASQCCSTIIMNSGAVCSDTVAPPCTVVASVA----------------------------------------------------------DNTTTCSNGLSGIEDPVNLICCNAACGQCGGAGCGSIPGLAGTD-CCSDEIEATAQLCSVSLAAPCVVDPPAFVAS--------------------------------------MCPNGIAGVQDGSVCCAEACNGQCGGVGCGSIVGTAGASDCCSATILQTGVPCGVGVAAPCVMQNGTFTNAPAAAPT 987
            +CSNG+ GIQS +   CC   CG CGG GC       L   +CC +E+ + G  C V   APC+V         +C NG  G+Q  N   CC  ECG  CGG+GC  + G +    CC + I + G +CS  +A PC V  S                                                              + TCSNG+ GI+      CC A CG CGG+GC  + G  G D CC  EIE   +LCSV +AAPCVVD  A   S                                      MC NGI G+Q G+ CC   C G CGG GC  + G  G  +CC + I   G  C V +AAPCV+       +P A PT
Sbjct: 1575 MCSNGIPGIQSGN--ACCLAECGGCGGSGCAQLGGG-LGEDNCCQSEIEDFGELCSVKMAAPCVVD-------DMCSNGIPGIQSGNA--CCLAECGG-CGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTCSNGIPGIQS--GNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDMCSNGIPGIQSGNACCLAECGG-CGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPT 1951
[Close]
BLAST of mRNA_S-firma_F_contig1080.1077.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 3.600e-30
Identity = 135/464 (29.09%), Postives = 169/464 (36.42%), Query Frame = 1 
Query:  106 CSNGLEGIQSDSLDVCCPEACGVCGGLGCTPANTSTLTSADCCATEVVESGVFCDVSGVAPCIVT-TAAAPA----------------------------------------------------------------TSVCVNGQTGVQDPNTDVCCPLECGDFCGGTGCGTIPG-VEASQCCSTIIMNSGAVCSDTVAPPCTVVAS------VADNTT--------------------------------------TCSNGLSGIEDPVNLICCNAACGQCGGAGCGSIPGLAGTD-CCSDEIEATAQLCSVSLAAPCVVDPPAFVAS-----------------------------------------------------------MCPNGIAGVQDGSVCCAEACNGQCGGVGCGSIVGTAGASDCCSATILQTGVPCGVGVAAPCVMQNGTFTNAPAAAPT 987
            CSNG+ GIQS +   CC   CG CGG GC       L   +CC +E+ + G  C V+  APC+V  +A AP+                                                                T  C NG  G+Q  N   CC  ECG  CGG+GC  + G +    CC + I + G +CS T+A PC V  S      VA  T                                       TCSNG+ GI+      CC A CG CGG+GC  + G  G D CC  EIE   +LCSV++AAPCVVD  A   S                                                            C NGI G+Q G+ CC   C+G CGG GC  + G  G  +CC + I   G  C V +AAPCV+       +P A PT
Sbjct: 1977 CSNGIPGIQSGN--ACCLAECGGCGGSGCAQLGGG-LGEDNCCQSEIEDFGELCSVTMAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDTCSNGIPGIQSGNA--CCLAECGG-CGGSGCAQLGGGLGEDNCCQSEIEDFGKLCSVTLAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADTCSNGIPGIQS--GNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVTMAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDTCSNGIPGIQSGNACCLAECDG-CGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVTMAAPCVVDGSAPAPSPVAMPT 2431
[Close]
BLAST of mRNA_S-firma_F_contig1080.1077.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 3.100e-27
Identity = 101/301 (33.55%), Postives = 138/301 (45.85%), Query Frame = 1 
Query:  106 CSNGLEGIQSDSLDVCCPEACGVCGGLGCTPANTSTLTSADCCATEVVESGVFCDVSGVAPCIVTTAAAPATSVCVNGQTGVQDPNTDVCCPLECGDFCGGTGCGTIPGVEASQCCSTIIMNSGAVCSDTVAPPCTVVASVADNTTTCSNGLSGIEDPVNLI----CCNAACGQCGGAGCGSIPG-LAGTDCCSDEIEATAQLCSVSLAAPCVVDPPAFVASMCPNGIA------------GVQDGSVCCAEACNGQCGGVGCGSIVGTAGASDCCSATILQTGVPCGVGVAAPCVMQNGT 957
            C   L+GI       CC   C  CGG GC+      LT ADCC ++++ +G  C   G APC++   ++P T     G  G+     DVCC  ECG  CGG+GCG+  G+ A++CC++ I  +   C      PC V    +          SG      ++    CC+A C +CGG+GC    G L G DCC+ +I     LCSV+ AAPC+VD                          GV  G  CC+  C  +CGG GC    G    +DCC++ I      C V  AAPC++   T
Sbjct:   21 CDGILKGIY------CCSAGCEECGGSGCSDRGDG-LTGADCCTSDILAAGKAC---GSAPCLLEEGSSP-TPASSGGCDGILQG--DVCCSAECGT-CGGSGCGSRAGLTANECCTSTIAAANVPCGSA---PCVVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDIS---NLCSVTGAAPCIVDGDTSPTXXXXXXXXXXXXXSGSFTCDGVLKGDYCCSAGCV-ECGGSGCSDRGGGLTGADCCTSDISNL---CSVTGAAPCIVDGDT 297
[Close]
BLAST of mRNA_S-firma_F_contig1080.1077.1 vs. uniprot
Match: D7FJ60_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ60_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.800e-23
Identity = 118/351 (33.62%), Postives = 144/351 (41.03%), Query Frame = 1 
Query:  106 CSNGLEGIQSDSLDVCCPEACGVCGGLGCTPANTST-LTSADCCATEVVESGVFCDVSGVAPCIVTTAAAP-ATSVCVN--GQTGVQDPNTDVCCPLECGDFCGGTGC---GTIPGVEASQCCSTIIMNSGAVCSDTVAPPCTVVAS--------VADNTTTCSNGLS-----GIEDPVNLI---------CCNAACGQCGGAGCGSIPGLAGTDCCSDEI-----------EATAQLCSVSLAAPCVVDPP-------AF----VASMCPNGIAGVQ--DGSVCCAEACNGQCGGVGCGSIVGTAGASDCCSATILQTGVPCGVGVAAPCVMQNGTFTNAPAAAPTIPPP 999
            CSNG+EGI+S + DVCCP ACG CGG  CT A  +  L   DCC  +++ SG  C  + +APCI+  A+   A   C N  G  G+   + DVCCP EC   CGG  C       G+    CC + I   G  CSD+ A PC    S        V + +T     L        EDP  +           C   C        G + G   +  C DE            E TA  CS +    C   P        AF    +   C  GI GV+   G VCC  +C G+CGG  C   VG  G   CC  TI      C    AAPCV         P  APT P P
Sbjct:   52 CSNGIEGIESANGDVCCPTACGFCGGEACTEAAVNAGLDDGDCCFGDIIVSGASCSENQMAPCIIDDASQESAGDTCSNTDGVEGISSGDGDVCCPSEC-VLCGGRDCTEAALAAGLADGDCCVSDITKEGVKCSDSGAAPCVAYDSEDETGSPLVQEASTPVYIALGCGKIGDYEDPFTVSSTVSDLTAEACYELCASESSLYFGLVEGNVCS--CGDEETFVETFLDTYDEQTAATCSTA----CPGSPDETCGGAQAFDLYQILPTCTGGIVGVEAASGDVCCPFSC-GECGGDRC---VGEGG---CCEHTIQSREDLCEYTNAAPCVFNVVAPPPTPVPAPTTPMP 388
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1080.1077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5K7R2_9PHAE1.070e-16867.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG71_ECTSI2.040e-10953.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LML5_ECTSI1.370e-8067.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LML4_ECTSI1.500e-4863.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZM1_ECTSI1.530e-3942.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC43_9PHAE1.400e-3843.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG29_9PHAE2.810e-3732.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ68_ECTSI3.600e-3029.09WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FWE8_ECTSI3.100e-2733.55Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FJ60_ECTSI3.800e-2333.62WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1080contigS-firma_F_contig1080:632..7843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FJ68
Preferred nameMTPAP
PFAMsFKBP_C,GOLGA2L5,PAP_assoc
Max annot lvl2759|Eukaryota
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Evalue2.2e-26
EggNOG OGsCOG0086@1|root,KOG4725@1|root,KOG0260@2759|Eukaryota,KOG4725@2759|Eukaryota
EC2.7.7.19
Descriptionimportin-alpha family protein binding
COG categoryS
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_003170.1
Exons10
Model size2859
Cds size1713
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1080.1077.1prot_S-firma_F_contig1080.1077.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1080 644..6709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.9782825-UTR-S-firma_F_contig1080:631..6431622815622.9782825-UTR-S-firma_F_contig1080:631..643Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1080 632..643 +
1696949460.6847332-UTR-S-firma_F_contig1080:631..6431696949460.6847332-UTR-S-firma_F_contig1080:631..643Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1080 632..643 +
1622815623.1259208-UTR-S-firma_F_contig1080:6709..78431622815623.1259208-UTR-S-firma_F_contig1080:6709..7843Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1080 6710..7843 +
1696949460.8026164-UTR-S-firma_F_contig1080:6709..78431696949460.8026164-UTR-S-firma_F_contig1080:6709..7843Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1080 6710..7843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.994993-CDS-S-firma_F_contig1080:643..7251622815622.994993-CDS-S-firma_F_contig1080:643..725Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 644..725 +
1696949460.701441-CDS-S-firma_F_contig1080:643..7251696949460.701441-CDS-S-firma_F_contig1080:643..725Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 644..725 +
1622815623.0060952-CDS-S-firma_F_contig1080:1341..15511622815623.0060952-CDS-S-firma_F_contig1080:1341..1551Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 1342..1551 +
1696949460.7120576-CDS-S-firma_F_contig1080:1341..15511696949460.7120576-CDS-S-firma_F_contig1080:1341..1551Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 1342..1551 +
1622815623.0154622-CDS-S-firma_F_contig1080:1818..20371622815623.0154622-CDS-S-firma_F_contig1080:1818..2037Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 1819..2037 +
1696949460.7210627-CDS-S-firma_F_contig1080:1818..20371696949460.7210627-CDS-S-firma_F_contig1080:1818..2037Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 1819..2037 +
1622815623.0274522-CDS-S-firma_F_contig1080:2625..27621622815623.0274522-CDS-S-firma_F_contig1080:2625..2762Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 2626..2762 +
1696949460.729646-CDS-S-firma_F_contig1080:2625..27621696949460.729646-CDS-S-firma_F_contig1080:2625..2762Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 2626..2762 +
1622815623.0411015-CDS-S-firma_F_contig1080:3253..33351622815623.0411015-CDS-S-firma_F_contig1080:3253..3335Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 3254..3335 +
1696949460.7397954-CDS-S-firma_F_contig1080:3253..33351696949460.7397954-CDS-S-firma_F_contig1080:3253..3335Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 3254..3335 +
1622815623.0513282-CDS-S-firma_F_contig1080:3736..37921622815623.0513282-CDS-S-firma_F_contig1080:3736..3792Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 3737..3792 +
1696949460.7535884-CDS-S-firma_F_contig1080:3736..37921696949460.7535884-CDS-S-firma_F_contig1080:3736..3792Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 3737..3792 +
1622815623.067421-CDS-S-firma_F_contig1080:4414..47781622815623.067421-CDS-S-firma_F_contig1080:4414..4778Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 4415..4778 +
1696949460.76177-CDS-S-firma_F_contig1080:4414..47781696949460.76177-CDS-S-firma_F_contig1080:4414..4778Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 4415..4778 +
1622815623.0829606-CDS-S-firma_F_contig1080:5150..52401622815623.0829606-CDS-S-firma_F_contig1080:5150..5240Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 5151..5240 +
1696949460.7721581-CDS-S-firma_F_contig1080:5150..52401696949460.7721581-CDS-S-firma_F_contig1080:5150..5240Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 5151..5240 +
1622815623.098839-CDS-S-firma_F_contig1080:5638..58301622815623.098839-CDS-S-firma_F_contig1080:5638..5830Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 5639..5830 +
1696949460.782231-CDS-S-firma_F_contig1080:5638..58301696949460.782231-CDS-S-firma_F_contig1080:5638..5830Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 5639..5830 +
1622815623.1136053-CDS-S-firma_F_contig1080:6428..67091622815623.1136053-CDS-S-firma_F_contig1080:6428..6709Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 6429..6709 +
1696949460.7931347-CDS-S-firma_F_contig1080:6428..67091696949460.7931347-CDS-S-firma_F_contig1080:6428..6709Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1080 6429..6709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1080.1077.1

>prot_S-firma_F_contig1080.1077.1 ID=prot_S-firma_F_contig1080.1077.1|Name=mRNA_S-firma_F_contig1080.1077.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=571bp
MMMGKKMSVAAMAGVTVALFASTITLTAAAVCSNGLEGIQSDSLDVCCPE
ACGVCGGLGCTPANTSTLTSADCCATEVVESGVFCDVSGVAPCIVTTAAA
PATSVCVNGQTGVQDPNTDVCCPLECGDFCGGTGCGTIPGVEASQCCSTI
IMNSGAVCSDTVAPPCTVVASVADNTTTCSNGLSGIEDPVNLICCNAACG
QCGGAGCGSIPGLAGTDCCSDEIEATAQLCSVSLAAPCVVDPPAFVASMC
PNGIAGVQDGSVCCAEACNGQCGGVGCGSIVGTAGASDCCSATILQTGVP
CGVGVAAPCVMQNGTFTNAPAAAPTIPPPGATLAPAAAAGNATTIGTLAP
AAAGGVVGATTAPTAGSRDFAFTEGPTIAGDVNGDNLVNSADTGIVGDTN
GDGVVDGLDTGLVGDTNNDGVVNDLDEVVGGTVAPTSAPTSAPAVAAAST
GAPTAAPTSADGTRDVELGTPSPADTNRDGFVDANDGVDTNGDGVIDEND
GVDTNGDGVIDSQDGAPVIEATPAPSSAVDTETDAGTSGNGAMSTVSLPA
GSVYASVIGVAVSVGGLLLL*
back to top

mRNA from alignment at S-firma_F_contig1080:632..7843+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1080.1077.1 ID=mRNA_S-firma_F_contig1080.1077.1|Name=mRNA_S-firma_F_contig1080.1077.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=7212bp|location=Sequence derived from alignment at S-firma_F_contig1080:632..7843+ (Sphaerotrichia firma ET2_F female)
CAGTCCCGCACCATGATGATGGGCAAGAAAATGAGCGTAGCCGCTATGGC
CGGCGTCACCGTCGCCCTCTTCGCGAGCACCATCACCCTCACAGGTACCT
ACGTCGCTGTGTTTGGCTTGAAGTGTTAGGCATTCGTGTCCTGTTTGTCA
CACCTTAGGGTTGTGTTGTTTCTCTTCGCCAACACCGTCACTCACAGGTA
TCCTACGCATGCATACATTTTTGAAACGTTAGCGCGTTATTGGTACATGG
GATGTTTGTAGAGCTGCCTCTATGTCGAAGCTTCCATAGTTTTGCTTCCC
TCCTTTTTTGCCATAGTTTCTTGTGGAACGTGCTGTTTTCCTTCGGTGCG
CCGGGGGTTGAGTTTGTTTGCTCTTTTTCCTGTTTGGTCTTCCCCTTGGC
TCCGCCCGCCGTTTTTTTGGCTGGCCGCCCGCTCTGCGCTCTTTTCCCGT
CCCTACCGAGGACAGATGTGATGAAAGGATGGCGACGAATCGCTGGTTGC
ACCCCCCTCCACCCTCCAGCCTCGACTGTTGTACATATGGCGCACCTTTA
TGCCCTTCGCGCCTGTGTGCTGGAGTGGTGTAGCCGCGTGCGTGTCCAGG
CCGTTTCGCGCTGGGTTCGTTACAACCAGTTGTGTTTCCCCCCCCTGCCA
TTCTTGTCCTCTCTCCACACGCTCGATCATTGCACTTGCCACGTCCACGC
CGGCGACTAGCAGCGGCCGTGTGCAGCAACGGGCTCGAGGGCATCCAGTC
CGACAGCCTGGATGTGTGCTGCCCCGAGGCGTGCGGCGTCTGCGGAGGTT
TGGGGTGCACCCCTGCCAACACCTCGACCCTCACCTCGGCGGACTGCTGC
GCCACGGAGGTCGTGGAGTCCGGGGTCTTCTGTGACGTGTCGGGCGTCGC
TCCTTGCATCGTCACCACCGGTAAGCACAGCTAGAGGTAGGCAGGCAGAC
AGACAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCCAGCAGTAG
CTGTCTGAGAGAGGAGGCCAACAACCGTCCCCCTGGAACGAACTCTTCCA
CAGGTTGGGCGCATGCCGCTTACGGTTTTTTGGGATAATTCTTTAAAAAG
GCAGCAACACTATGCAGGCCCCCTGTTCCCCGCCTCATCCCGCCCCCCAA
CCGCCCCCCTGCATTCTTCGATCCCTCCGCTTCGCAGCCGCCGCCCCCGC
CACCTCGGTGTGCGTCAATGGCCAGACCGGCGTCCAGGACCCCAACACCG
ACGTGTGCTGCCCGCTCGAGTGCGGCGACTTCTGCGGCGGCACGGGCTGC
GGGACCATTCCGGGGGTGGAGGCCTCGCAATGTTGCTCGACGATCATCAT
GAACTCCGGGGCCGTGTGCTCCGACACGGTCGCTCCTCCTTGCACCGTGG
TCGCCTGTGAGTTGTTGTGTCTTGTTTTCGATCTTTTCGGTTTTGTAGCG
TGGGTGGTGGGTCCATGTGTGCGTTTTTTTTTCCGGCTGTGTTGGAAGGT
GGTGGTGCTCGGTGAAAGTGATAAGTGGTATCATGGTGACGGTGATTGTG
TTTACTTTTGGTGTCGCCGATGCTGCGTTTGGTGATTGTGCCGTCTGGTC
TACTGCTATATTTAGCAGAGACGAAAACTAAAACGCGAAAACAGGCATTG
GTTTAGGGAGCGAAGGGTGCTTCTTCGCCGTGAAGAACAGGAAGCGATGA
AATAGATTGTTTGGAAAACACACCGCCGGATCATGTCACAATGTTGTCTT
GTTTGTTACCCATGGCCTCCGGGGCGGTCGGCTCTGATGCCGTCGCCCCG
CCTTGCACCGTGGTCGCCACTTAGAGTTGTTTTGGGCCTTTCTCGTCGCC
TTGCCGTGTCTTTGGTCTTTTGGCTCTTCTTGCCTTCCTGTTCGGCATGG
TTTGTGCTTAGTTTTTTCGCCTTACCTTTCCGTTTCTTTGCCCCCTTTCC
TTTCCTGGCATTTCATTTCCTTGCCTTGCCTTGCCTCGACGCAGCTGTCG
CCGACAACACCACCACCTGCAGCAACGGATTGTCAGGAATCGAGGACCCC
GTGAACCTTATCTGCTGCAACGCCGCCTGCGGACAGTGCGGCGGTGCCGG
CTGCGGAAGCATCCCCGGTCTTGCTGGCACGGTGAGGATCATTGGATTTT
CGGTATTGCAGGCTGTTCGTGAATGTTGGAAGTTGTTTCTACTTCTGTGG
ATCTGACCGGATCTGATGAAAATAGCTATCCCCCGAGTTTAAGGTGGTTT
TGTCGTAGACCCTGGTTGGAGTGCTGCGGTAGACTTCGCTTCGCTCACTC
CCACGTACGGTCGATGGCTGTTCTTCCTCTCATCAACCAACCCACGTGTT
CCGCGTTCCACCTGTCGCGTTTGTGTCATGCCATTTAACTATCTTGTCGC
GCCAGTCACAATGAATGACAACGTTGTTTCTACATCAACCGTGTCATCTC
ACTTGTTGCCCTGTCTGCCAACCGGCCTCGTCTCGGCTCCTTATGCCGTT
CCATGTCGCGTCATGTTTTGTCGCGTCTGTCAACGGTCAAACGGCAGAAG
TTCCTCTATCAACCATCGCACGTATTGCCGCTCCACCGACTTGTCTCGTC
ATTTCGTGCCGTGTGATGTCAGGACTGCTGCTCCGACGAGATCGAAGCCA
CCGCCCAGCTCTGCTCCGTCTCTCTCGCCGCTCCCTGCGTGGTCGACCCA
CCTGGTGAGCTAAGATAAATAAGACTCGAGGCATTTTGGATGGGACGGAA
CATGTGTTTTGTTGCTGCTGCCCGTCTCCGTCTCTCTGCGTCGCCGACCC
ACCAAGCGGAGAACTCTGTGGTTTAAACAAACAAGACCATTCGAGGCATC
TGGACCGAATACCATAGTTTGTGCTTGCTGCTGCCATGTCTATGTCTCTG
CGCCCTGGTGGAGGGTCTCGCTCTCGCTTCCTCCCTTGCTGTCGCGATAT
TTACGGCTCTTGTGGAAAGATGTTTGTGGGGGGTCGATGATTCTTCGGTT
TGGGTGTTTTTTTTGCCTGGGTATCAACGTCCGCTTTTTCCCTTTGCCCT
CCTCTTTCGTGCCGTGCCGCCGTACCCTCCTCTTTCCCTCCCTTTGTTCT
TTCAGCCTTCGTCGCGTCGATGTGCCCCAACGGTATCGCCGGCGTCCAGG
ATGGCTCCGTGGTGAGTGTGTAGCAACCTCTATGCCTCTGGTTACGACAT
CGATGGATATAGAGCTTGCTGAGCAAGGCGTGTTGTGCGTGCTCGCTATC
GTCGTTGTCGTTTTGATCCTGGTTAGCCAGAAGCTCTTAGTGTCCACCCG
TCTATTGTTGTAGCGTGCTGCTGTGCATGGAAAGAGGTGTTATGATTTGT
CGAGCTTTGCCGGCCGATCTCACGCCAATGCAACGCCATGCCATCTCCCG
GACCCGCACTTGAGAGACTGGAAGGGAAGCTCCCCATTCAAGATCCATCT
AGATTACTTGTAGCAGGCTACATACTCGGCATTTTTGTCTGAGAATGACG
AAATTTGTTTGGTGTTTTGCTACCGTAGCTAGTTTTTGGTCTTGTGGGAG
GGCATATATCGAAGAAGTCTAGGCTGAAACAATCCAAAAACGTAAGAACT
AGTAGCCCAGCAACCCTTAGGACTCAAAACCCACACACCCACAACCATAA
ATATTATTGTGGCAACACCCAACACTCATCACACGACACCTGCTGGGGTC
AGGATTAGGCATGTCAGAGGTTGCCGGGTTCTCGCGTGCGGGCGCTTGCT
TACTTTCCCCAACCCTCGTTGTTTGTTGTTCAGTGCTGCGCCGAGGCGTG
CAACGGCCAGTGCGGCGGCGTCGGGTGCGGCTCCATCGTCGGCACGGCCG
GAGCCTCCGACTGCTGCTCCGCCACCATCCTCCAGACCGGCGTGCCGTGC
GGCGTCGGCGTGGCGGCCCCGTGCGTCATGCAGAACGGCACCTTCACCAA
CGCCCCGGCGGCGGCGCCCACGATCCCCCCGCCGGGCGCCACCCTTGCCC
CCGCCGCCGCCGCCGGCAACGCTACCACCATCGGTACGCTCGCCCCCGCC
GCCGCTGGTGGCGTGGTAGGTGCGACCACCGCTCCCACGGCGGGGTCCCG
TGACTTCGCGTTCACGGAGGGGCCTACCATCGCCGGCGACGTGAACGGTG
GGTTTGGGTTTGGTTGGCGGAGTCTTTGCGCGCGCACGCAATTCGAACGA
TGATACGCAATTTCGGTATTCTGGTGTGTCTGGCTACCGCCGCGCTTGTT
TCATAGAGAGCTAAAGGTTTTAGGTGGTCGATATGGGGTGCATGCAGAAT
TTTCCGAAGGGATTATCAACTCGCGTGGGTGTAGCCTTGTACCTACCCTT
GACTCGTATCGACTGCTTCCATGTGTGCAGCTCGCATGTACTCACCCCAT
ACCAGGTTCGTGTTCTCAAATTGCTCTTCCATTCCCACCCTACCCGCCTT
CCTCAAAACGCATGACACGTCGACTGCATGCTCTAATGGTTTGATGGCGT
GTGTTGTGATTATGTTTAGGTGACAACCTCGTGAACTCTGCCGACACCGG
TATCGTTGGAGACACGAACGGAGACGGTGTGGTTGACGGCCTCGACACCG
GCCTCGTGGGTGAGTGCTGAGTGCTGAGGGGGCAAACGTTTACGTTCTTG
TTTGAGGAATGTGTTGTGCGTCCTAACCTGTCGTCCCCCTCCGCTTGCCT
TTCACTGGGTCTATGACGCTCCTGGTGGTGTTCGTTATTTTGTTATTTCC
AATGCGCTGTTGTTGTTCCTTCGTTTTCGCCCCCTCAGGAGTAGTAGAAA
CTCCGGCAGCTTTGTCATCGACGTGTAGTCCATCCTTTCCAAACACAAAA
AAGACTCGCGCATTCCATACTCGCCTCCCTTCGGGCCTTGCCAACCGTCC
ACCTTGTCATCCATTGATCCTTGTCCCTTCCAACCCAGAGAATAAAGCTC
ACGCATCGTATTCGCGTGCCCTTGGCCCCGCCAACCCTCTCCCGACCACC
ATACCAGGCGACACCAACAACGACGGAGTGGTGAACGACCTCGACGAAGT
CGTCGGCGGCACGGTGGCGCCCACCTCTGCCCCGACCTCGGCCCCTGCCG
TGGCCGCGGCCAGCACCGGAGCCCCCACTGCCGCCCCTACCAGCGCCGAC
GGGACCCGCGACGTTGAGTTGGGCACGCCATCCCCCGCCGACACCAACAG
TGAGACAGATACATGTGTACCTTGGTAGAGTTCGCCCGCTTTCATTGGTC
ACCGGCCATCGGGTGGTGCAGGAAGACAAGCTCGGTGTTAGGGGTGCCTG
CGAGAGTCTGCTGTTCCTTTTCGTTGGTTTAGCCGTTTCGTTCCGTGGCG
TTGGCGTCGGCTCAGGAAGCAGTTGAGAGACACGATGTTTTGCGTTTTGG
AGTATTCGGTGGAGAGACACCTGCTGCAATAGACAAAATAATGTTGGTGG
AATTCCTACCTGACTTGAAATTGAATCTCGGAAGATTTGAACAGACTAGA
CTGGCTGACGCAGCAGGACGCTGAACAAACACCCGCGGTGTGAGGGCCAC
ACCCAAAGGTGGTATGAGCAGAACATTGATGAACCGCGTGCGGCCCCAGC
GGCAGTGCCAAGGTCTGATTTGGCTCAACGAGTCCAGGAGGGAGGTACAA
GCTTGGGCGGGGACGAGAGAGGGGTGAAAATGTTGAAACGTGACGTCATT
TAACTATTAGCCTTTCATGACGCACATCCTCGATACATGGGCGATCCCTA
AACCGCGGAGCCCACTCTTCCGCGCTCTGTTTTCTAATATGTTGCAGGAG
ACGGTTTTGTGGACGCGAACGATGGAGTTGACACCAACGGAGATGGCGTT
ATCGACGAGAACGACGGAGTTGACACCAACGGAGACGGCGTCATCGACTC
GCAAGACGGAGCCCCCGTCATCGAAGCTACCCCCGCACCTTCGTCCGCCG
TCGATACCGAAACCGATGCCGGAACGTCGGGCAATGGCGCCATGTCGACG
GTCAGCCTCCCCGCGGGCTCCGTGTACGCCAGTGTGATCGGCGTGGCCGT
GTCCGTTGGCGGCCTGCTTTTGCTCTGATTTGTGACTCTTTTTTGTCCCC
AGATTATAAATGCATGTTTTTCCGATGTAGGTTTGTGTTTGTGCCTCGAA
GCAATCCTTTGTTCTCTTGGGAGTGGGAGTCGGGACTGTTTTGTTTTTGC
CGTCGTGCAGAGTGGTCTTTTTTCCCGGGTTGGTTGAGTCGGTGCTTGCT
CCCTTTGTGTTTTTCAGAAGTAGCGTTGCCGGGGAGGTGAGAGGTTGAAA
AGGCAGCGTGTTTGCTGCTTCTGTCTCCTGAACTGAACCATGCTTTTGAG
CGTGGCACGCATACCTCATTTCGAGATTGCGGTGTGGGGGTGCGGGTACT
AGACTTTATAGAGTTTTTTTTTGTGTCTTCCACGGGAAGTACTACGTGTG
TTGATTTTTGAAGACACTGGCTTGGAAAGATAGGGGCTAACGCGGTCGTG
ACCTCTTTAGGATTAGACGCCACCCTTTTCTTCGTTCAGCACTTGGACGC
GGGGTCATTTCCGAGACCATTTCTGACTGATTGGAGTTCGAGCCCGAAAC
GCACCGTTTGTAACTGTCGCGCCGAAGCTTGACCTGTTCATAAACTGCGA
ATGTGTGTTCTCTGTGAGACTACTGACTACGTAGCTGATTTTGACTGCGA
GATGCCATATTTCATTTCGAGATTGATGTGTTGGCGGGTATCCGGCGAGA
GGCGGGAACACGAAGTGGTGCGCTATTTCGCCGCTATTGGAGATCGTACA
ATAAGCGTGTGGGCGGTTTCATTTGAAACCTGAGTTAATGTGTGTGTTTG
GGGGCTCGTACTTGTATAATCCCTATTGTGTCGCGTCTGTAGAGCTTTTC
TCGACGTGGACGTGTTAACTTGACGTTAGGTGAGAGCGTACGCTAGGCTT
GAGTTGATTTGGTTCTGCGCCGCAGTTTGCTGAAATCGTGGATGATGACT
CTTTTTTTTTCGGTCGGTTCCTTCTAGGCATTTTGCCGTGGGAAAAGTGG
GTCAACAGAGTTACAAAGTTCAACGGAGCGTATGTAGTGAAAATTCGGCA
ATCGCTTTTGTCTGGACGTCTGTGTTTTCCCCCAGACATACATACTGAAG
CAGATAGTTTCTTTTTTTCTGCCCTCTGCTCTTTGGGAAAGCGCGGAGAC
GCAAGCTCGCAC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1080:632..7843+

>mRNA_S-firma_F_contig1080.1077.1 ID=mRNA_S-firma_F_contig1080.1077.1|Name=mRNA_S-firma_F_contig1080.1077.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3426bp|location=Sequence derived from alignment at S-firma_F_contig1080:632..7843+ (Sphaerotrichia firma ET2_F female)
ATGATGATGGGCAAGAAAATGAGCGTAGCCGCTATGGCCGGCGTCACCGT
CGCCCTCTTCGCGAGCACCATCACCCTCACAGATGATGATGGGCAAGAAA
ATGAGCGTAGCCGCTATGGCCGGCGTCACCGTCGCCCTCTTCGCGAGCAC
CATCACCCTCACAGCAGCGGCCGTGTGCAGCAACGGGCTCGAGGGCATCC
AGTCCGACAGCCTGGATGTGTGCTGCCCCGAGGCGTGCGGCGTCTGCGGA
GGTTTGGGGTGCACCCCTGCCAACACCTCGACCCTCACCTCGGCGGACTG
CTGCGCCACGGAGGTCGTGGAGTCCGGGGTCTTCTGTGACGTGTCGGGCG
TCGCTCCTTGCATCGTCACCACCGCAGCGGCCGTGTGCAGCAACGGGCTC
GAGGGCATCCAGTCCGACAGCCTGGATGTGTGCTGCCCCGAGGCGTGCGG
CGTCTGCGGAGGTTTGGGGTGCACCCCTGCCAACACCTCGACCCTCACCT
CGGCGGACTGCTGCGCCACGGAGGTCGTGGAGTCCGGGGTCTTCTGTGAC
GTGTCGGGCGTCGCTCCTTGCATCGTCACCACCGCCGCCGCCCCCGCCAC
CTCGGTGTGCGTCAATGGCCAGACCGGCGTCCAGGACCCCAACACCGACG
TGTGCTGCCCGCTCGAGTGCGGCGACTTCTGCGGCGGCACGGGCTGCGGG
ACCATTCCGGGGGTGGAGGCCTCGCAATGTTGCTCGACGATCATCATGAA
CTCCGGGGCCGTGTGCTCCGACACGGTCGCTCCTCCTTGCACCGTGGTCG
CCTCCGCCGCCCCCGCCACCTCGGTGTGCGTCAATGGCCAGACCGGCGTC
CAGGACCCCAACACCGACGTGTGCTGCCCGCTCGAGTGCGGCGACTTCTG
CGGCGGCACGGGCTGCGGGACCATTCCGGGGGTGGAGGCCTCGCAATGTT
GCTCGACGATCATCATGAACTCCGGGGCCGTGTGCTCCGACACGGTCGCT
CCTCCTTGCACCGTGGTCGCCTCTGTCGCCGACAACACCACCACCTGCAG
CAACGGATTGTCAGGAATCGAGGACCCCGTGAACCTTATCTGCTGCAACG
CCGCCTGCGGACAGTGCGGCGGTGCCGGCTGCGGAAGCATCCCCGGTCTT
GCTGGCACGCTGTCGCCGACAACACCACCACCTGCAGCAACGGATTGTCA
GGAATCGAGGACCCCGTGAACCTTATCTGCTGCAACGCCGCCTGCGGACA
GTGCGGCGGTGCCGGCTGCGGAAGCATCCCCGGTCTTGCTGGCACGGACT
GCTGCTCCGACGAGATCGAAGCCACCGCCCAGCTCTGCTCCGTCTCTCTC
GCCGCTCCCTGCGTGGTCGACCCACCTGGACTGCTGCTCCGACGAGATCG
AAGCCACCGCCCAGCTCTGCTCCGTCTCTCTCGCCGCTCCCTGCGTGGTC
GACCCACCTGCCTTCGTCGCGTCGATGTGCCCCAACGGTATCGCCGGCGT
CCAGGATGGCTCCGTGCCTTCGTCGCGTCGATGTGCCCCAACGGTATCGC
CGGCGTCCAGGATGGCTCCGTGTGCTGCGCCGAGGCGTGCAACGGCCAGT
GCGGCGGCGTCGGGTGCGGCTCCATCGTCGGCACGGCCGGAGCCTCCGAC
TGCTGCTCCGCCACCATCCTCCAGACCGGCGTGCCGTGCGGCGTCGGCGT
GGCGGCCCCGTGCGTCATGCAGAACGGCACCTTCACCAACGCCCCGGCGG
CGGCGCCCACGATCCCCCCGCCGGGCGCCACCCTTGCCCCCGCCGCCGCC
GCCGGCAACGCTACCACCATCGGTACGCTCGCCCCCGCCGCCGCTGGTGG
CGTGGTAGGTGCGACCACCGCTCCCACGGCGGGGTCCCGTGACTTCGCGT
TCACGGAGGGGCCTACCATCGCCGGCGACGTGAACGTGCTGCGCCGAGGC
GTGCAACGGCCAGTGCGGCGGCGTCGGGTGCGGCTCCATCGTCGGCACGG
CCGGAGCCTCCGACTGCTGCTCCGCCACCATCCTCCAGACCGGCGTGCCG
TGCGGCGTCGGCGTGGCGGCCCCGTGCGTCATGCAGAACGGCACCTTCAC
CAACGCCCCGGCGGCGGCGCCCACGATCCCCCCGCCGGGCGCCACCCTTG
CCCCCGCCGCCGCCGCCGGCAACGCTACCACCATCGGTACGCTCGCCCCC
GCCGCCGCTGGTGGCGTGGTAGGTGCGACCACCGCTCCCACGGCGGGGTC
CCGTGACTTCGCGTTCACGGAGGGGCCTACCATCGCCGGCGACGTGAACG
GTGACAACCTCGTGAACTCTGCCGACACCGGTATCGTTGGAGACACGAAC
GGAGACGGTGTGGTTGACGGCCTCGACACCGGCCTCGTGGGTGACAACCT
CGTGAACTCTGCCGACACCGGTATCGTTGGAGACACGAACGGAGACGGTG
TGGTTGACGGCCTCGACACCGGCCTCGTGGGCGACACCAACAACGACGGA
GTGGTGAACGACCTCGACGAAGTCGTCGGCGGCACGGTGGCGCCCACCTC
TGCCCCGACCTCGGCCCCTGCCGTGGCCGCGGCCAGCACCGGAGCCCCCA
CTGCCGCCCCTACCAGCGCCGACGGGACCCGCGACGTTGAGTTGGGCACG
CCATCCCCCGCCGACACCAACAGCGACACCAACAACGACGGAGTGGTGAA
CGACCTCGACGAAGTCGTCGGCGGCACGGTGGCGCCCACCTCTGCCCCGA
CCTCGGCCCCTGCCGTGGCCGCGGCCAGCACCGGAGCCCCCACTGCCGCC
CCTACCAGCGCCGACGGGACCCGCGACGTTGAGTTGGGCACGCCATCCCC
CGCCGACACCAACAGAGACGGTTTTGTGGACGCGAACGATGGAGTTGACA
CCAACGGAGATGGCGTTATCGACGAGAACGACGGAGTTGACACCAACGGA
GACGGCGTCATCGACTCGCAAGACGGAGCCCCCGTCATCGAAGCTACCCC
CGCACCTTCGTCCGCCGTCGATACCGAAACCGATGCCGGAACGTCGGGCA
ATGGCGCCATGTCGACGGTCAGCCTCCCCGCGGGCTCCGTGTACGCCAGT
GTGATCGGCGTGGCCGTGTCCGTTGGCGGCCTGCTTTTGCTCTGAGAGAC
GGTTTTGTGGACGCGAACGATGGAGTTGACACCAACGGAGATGGCGTTAT
CGACGAGAACGACGGAGTTGACACCAACGGAGACGGCGTCATCGACTCGC
AAGACGGAGCCCCCGTCATCGAAGCTACCCCCGCACCTTCGTCCGCCGTC
GATACCGAAACCGATGCCGGAACGTCGGGCAATGGCGCCATGTCGACGGT
CAGCCTCCCCGCGGGCTCCGTGTACGCCAGTGTGATCGGCGTGGCCGTGT
CCGTTGGCGGCCTGCTTTTGCTCTGA
back to top