mRNA_S-firma_F_contig108.1075.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig108.1075.1
Unique NamemRNA_S-firma_F_contig108.1075.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig108.1075.1 vs. uniprot
Match: A0A6H5L3C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C0_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 2.910e-74
Identity = 129/200 (64.50%), Postives = 156/200 (78.00%), Query Frame = 1 
Query:  244 PGTHAPIKKYNYERSLFRWVMSRHPEPFEAHGISTKTLERAPLAREAFYTSNWPGAKVLVHCSHDNKYERTAFFDAIIERGLRDG-TRFNVDHVTSDERSKLGITMDRASGKYYLHAYGSTRGRRSSTRR---GSATSSEGDLDQ----HPIIRELGDLIHSEIEAAGDNPDVSYQKSRCEPGATRGSTVLTFSVTIQSR 819
            P +H PIKKYNYERSL+RW++SRHPEPFE HGI+TKTLERAPLAREAFY S W GAKVLV    DNK+ERT FFD IIERGL  G TRF+V+HV SDE+SKLGIT+D A+GKYYL AYGS + RR + RR   GS +SS+ D D     HP ++++GDLI SEIEAAG++ +V   +SR EP +  GSTVLTFS++I+ R
Sbjct:    2 PSSHLPIKKYNYERSLYRWLVSRHPEPFEEHGITTKTLERAPLAREAFYRSGWLGAKVLVQNHEDNKFERTNFFDQIIERGLGHGDTRFSVEHVKSDEQSKLGITLDSATGKYYLQAYGSAKTRRPANRRNSAGSVSSSDADQDPAEPPHPTVKKVGDLIASEIEAAGEDAEVRLDESRLEPASASGSTVLTFSISIRRR 201
[Close]
BLAST of mRNA_S-firma_F_contig108.1075.1 vs. uniprot
Match: A0A835Z9J0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J0_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.150e-30
Identity = 61/120 (50.83%), Postives = 81/120 (67.50%), Query Frame = 1 
Query:  238 MPPGTHAPIKKYNYERSLFRWVMSRHPEPFEAHGISTKTLERAPLAREAFYTSNWPGAKVLVHCSHDNKYERTAFFDAIIERGLRDGTRFNVDHVTSDERSKLGITMDRASGKYYLHAYG 597
            M      PIK+YNYERS +RW++ RHP  FE  G+++  LERAP+AR+A + ++W G+K LV C  + +YERT FFD  I+RGL  GTRF ++H+T  ER  LGI  D  +GK YL  YG
Sbjct:    1 MASAASTPIKRYNYERSAYRWLLQRHPRQFEKEGLTSTALERAPVARKALFHTSWSGSKKLVRCV-EGRYERTVFFDTFIKRGLGFGTRFAIEHLTPQERQILGICED-PTGKVYLAHYG 118
[Close]
BLAST of mRNA_S-firma_F_contig108.1075.1 vs. uniprot
Match: A0A836CGN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 9.150e-30
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 1 
Query:  259 PIKKYNYERSLFRWVMSRHPEPFEAHGISTKTLERAPLAREAFYTSNWPGAKVLVHCSHDNKYERTAFFDAIIERGLRDGTRFNVDHVTSDERSKLGITMDRASGKYYL 585
            PIKKYNYERS +RW+++RHP+ FEA G++T  LERAP AR+AF+T  WPGA++L+ C  + +YERT FFD II RGL+  TRF   H+T  E   L I    A  K+YL
Sbjct:    4 PIKKYNYERSAYRWLLARHPKQFEARGVTTTVLERAPAARKAFWTCGWPGAQLLIRCV-EGRYERTVFFDTIIARGLQLSTRFAYPHLTPAESDALQIRQSGA--KHYL 109
[Close]
BLAST of mRNA_S-firma_F_contig108.1075.1 vs. uniprot
Match: A0A836C9L8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.490e-27
Identity = 55/113 (48.67%), Postives = 79/113 (69.91%), Query Frame = 1 
Query:  256 APIKKYNYERSLFRWVMSRHPEPFEAHGISTKTLERAPLAREAFYTSNWPGAKVLVHCSHDNKYERTAFFDAIIERGLRDGTRFNVDHVTSDERSKLGITMDRASGKYYLHAY 594
            +PI+KYNYERS +RW+M+RH + F   GI+TKTLE A  AR+AF+ S W GA++L+      ++ERT  F+ II+RGL  GTRF++D +++ E++ LGIT D    KY L  +
Sbjct:  336 SPIQKYNYERSTYRWLMARHADIFARCGITTKTLESASRARQAFHQSGWEGARMLIRADSQGRHERTPLFETIIKRGLSKGTRFDIDTISAREQATLGITFDSTLEKYVLSQF 448
[Close]
BLAST of mRNA_S-firma_F_contig108.1075.1 vs. uniprot
Match: A0A835YVN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.420e-24
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:  256 APIKKYNYERSLFRWVMSRHPEPFEAHGISTKTLERAPLAREAFYTSNWPGAKVLVHCSHDNKYERTAFFDAIIERGLR--DGTRFNVDHVTSDERSKLGITMD 561
            +P +KYNYERS++RW+M+R+ E FE  GI+TKTLE A  AREAFY S WPGA+ L+      ++ERT FF+AII+RG+R   G RF+   +T+ E + LGI  +
Sbjct:    4 SPTQKYNYERSMYRWLMARNSEAFETCGITTKTLESAKRAREAFYGSGWPGARYLIQVDSSGRHERTPFFEAIIQRGIRHQSGCRFDGAALTAGELTSLGIVRN 107
[Close]
BLAST of mRNA_S-firma_F_contig108.1075.1 vs. uniprot
Match: A0A6H5JN30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN30_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.920e-21
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:  259 PIKKYNYERSLFRWVMSRHPEPFEAHGISTKTLERAPLAREAFYTSNWPGAKVLVHCSHDNKYERTAFFDAIIERGLRDGTRFNVDHVTSDERSKLGITMDRASG 573
            P+ K+N+ERS +RW+++RHP  FE    + + L+ A  AR+AFY   W  AKVL+  S D K+ERT FFDAII RGLR+ TRF+   +T DE   LG+  D   G
Sbjct:   11 PVMKWNFERSCYRWLVTRHPAQFERLDFTAQILQSASRARKAFYECGWAEAKVLIRPS-DGKFERTPFFDAIIRRGLRNSTRFDAATLTEDEIEALGMHRDETLG 114
[Close]
BLAST of mRNA_S-firma_F_contig108.1075.1 vs. uniprot
Match: A0A835YN03_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN03_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.920e-7
Identity = 36/114 (31.58%), Postives = 52/114 (45.61%), Query Frame = 1 
Query:  256 APIKKYNYERSLFRWVMSRHPEPFEAHGISTKTLERAPLAREAFYTSNWPGAKVLVHCSHDNKYERTAFFDAIIERGLRDGTRFNVDHVTSDERSKLGITMDRASGKYYLHAYG 597
            +PIK+YNYERS +R V                                            + +YERTAFF+++I RGL+  TR + +H+  +E++ LGI  D A+G  YL  YG
Sbjct:    5 SPIKRYNYERSAYRCV--------------------------------------------EGRYERTAFFESLIARGLQFATRLSAEHLLPEEKAALGIAEDAATGTVYLSHYG 74
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig108.1075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L3C0_9PHAE2.910e-7464.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z9J0_9STRA2.150e-3050.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CGN8_9STRA9.150e-3055.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9L8_9STRA3.490e-2748.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVN4_9STRA2.420e-2451.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JN30_9PHAE4.920e-2148.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YN03_9STRA4.920e-731.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig108contigS-firma_F_contig108:32387..36802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_006210.1
Hectar predicted targeting categoryother localisation
Exons3
Model size1194
Cds size957
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig108.1075.1prot_S-firma_F_contig108.1075.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig108 32387..36565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.726573-CDS-S-firma_F_contig108:32386..331361622815622.726573-CDS-S-firma_F_contig108:32386..33136Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 32387..33136 -
1696949460.4921112-CDS-S-firma_F_contig108:32386..331361696949460.4921112-CDS-S-firma_F_contig108:32386..33136Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 32387..33136 -
1622815622.7380617-CDS-S-firma_F_contig108:35393..355531622815622.7380617-CDS-S-firma_F_contig108:35393..35553Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 35394..35553 -
1696949460.5028226-CDS-S-firma_F_contig108:35393..355531696949460.5028226-CDS-S-firma_F_contig108:35393..35553Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 35394..35553 -
1622815622.750639-CDS-S-firma_F_contig108:36518..365651622815622.750639-CDS-S-firma_F_contig108:36518..36565Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 36519..36565 -
1696949460.511284-CDS-S-firma_F_contig108:36518..365651696949460.511284-CDS-S-firma_F_contig108:36518..36565Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 36519..36565 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.7629135-UTR-S-firma_F_contig108:36565..368021622815622.7629135-UTR-S-firma_F_contig108:36565..36802Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig108 36566..36802 -
1696949460.5235531-UTR-S-firma_F_contig108:36565..368021696949460.5235531-UTR-S-firma_F_contig108:36565..36802Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig108 36566..36802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig108.1075.1

>prot_S-firma_F_contig108.1075.1 ID=prot_S-firma_F_contig108.1075.1|Name=mRNA_S-firma_F_contig108.1075.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=319bp
MPPGTHAPIKKYNYERSLFRWVMSRHPEPFEAHGISTKTLERAPLAREAF
YTSNWPGAKVLVHCSHDNKYERTAFFDAIIERGLRDGTRFNVDHVTSDER
SKLGITMDRASGKYYLHAYGSTRGRRSSTRRGSATSSEGDLDQHPIIREL
GDLIHSEIEAAGDNPDVSYQKSRCEPGATRGSTVLTFSVTIQSRDDGGDD
SGDDSGRRMAGSERVGAAAAAAAADAGGGNPTGMGTGTPQQPGRPAGNAP
SLEAQRRHQQHQQQQQQHQQQQQQQQPQPGSNNRESSTVAAAAAALASVA
QGGKKLKARGRPMANSNSK
back to top

mRNA from alignment at S-firma_F_contig108:32387..36802-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig108.1075.1 ID=mRNA_S-firma_F_contig108.1075.1|Name=mRNA_S-firma_F_contig108.1075.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4416bp|location=Sequence derived from alignment at S-firma_F_contig108:32387..36802- (Sphaerotrichia firma ET2_F female)
CGCTAAAAACAACTAGCCTCGCGGAGAAGCCCTATTGATTTTCATACACA
GGTCGGAAGGAAGAGGAGTCGAAGGTTGCTTTCAGGCAGTCCAGTGCTGC
AGAGGCACCCAAGTGCGCCGGGCAACAGCCCGAAGGGAAGAGCAGCTCAG
GACCCGTGCCATTTTTGCAGGTTTTCCTTTGCAAGCAAAGCTTGTGTGTG
TGCAAGGCAAGGCGCTGCACACCATCATTATCGCGCCATGCCGCCAGGAA
CCCATGCGCCGATAAAGAAGTACAACTACGAGAGGCGAGTGTGTGCTGGC
TTGTTTTCTTGGCACGAGTGCGTTGGGTCTGCTTCGTTTTGTTTGCGTGG
CTTGTTTTGTTTTGGCGTGGCAACTCGCTTCTTCACGAATCACACGCACG
CGGCGGTCGCGACCTTGACACCCGCGTTTAGAAAAAAAAGAGGGTACTTG
TACATGAAAAAAAAGCGAATGTAATGCCACACACATCGAAGTGTGCTCTC
TCTGCATCGATGCCGCGAACCCCACCGGCGCACGTTCTGCGCTCCAACAA
AAATAACGCTTTCTCTCCGGCAGTCCAGCGCACGGGTGTCCTTAACATGC
GGGTGTGCGCTGCTGCGTATTCACTAAAAAGCAGAAACGTGAAGAACGTG
TTTGTTTGGCGAAGCTGGCGGGGCATTTGCTGCGTATTATTTTCGTCCCA
CCCAACAGCGAGATAGCGAGACAGATTTGCCGTTGAGCAGAGGCGGGGTG
GGAGCATTTCGACATTAATGAGAGGCGCGTGGGCGAGGAGATAACACTGT
GCGCGTGGGCGATATGTATGTGTACCGTAGAGATGATACCGTGGCGCGAG
CTTCACTCTGGAAATGTCGTCGATCCCCGATCCCCGTCGATCGTGTTCTT
AGGTTCGGCGGAGCGTTTAGAACTGGCTATATATATCGACCGACACTGGT
GATGAAGCGTTTTTTTTTGTGTGCTGTTTTTGTTGTTTGATCTCGTGCTG
TGCATACCTCAGACTCATTGACTTATAACACACACACGTAAGATGCCACA
CTGGACTTAGGACACGAGTCTGCTCATTCAACGTGCAATCTAGCTAAACC
CCACGCGCCAAGTCCTCTGCACCTGCGCCGACAGCCAACTACCCAACAAG
CTTCAACGCCCCGCCCCTCCAACAACCAATAACTTGCTCCACACACGCTG
CCTGCCGCCATCGGCAAATTCGATGGACTGCCTATTATCACTGCCACAGA
TCTCTCTTTCGATGGGTTATGAGTCGCCATCCCGAGCCTTTCGAGGCGCA
CGGCATTAGCACCAAAACTCTGGAACGAGCCCCTCTGGCGCGCGAAGCCT
TCTACACGTCCAACTGGCCGGGGGCGAAGGTGCTCGTGCACTGCAGCCAC
GACAACAAGGTGGGAGAACAGCGAAACGGGGCGGCGAATTGCGCGCAACC
ACTACTATTGTGTGCAAGTAATTCGTGGGCGCCAAAAAGGGGAGAGGAAA
ATATTGGCAGTCTGCACGTTTCCAAACTCGCCGTTTACGTCCGTGAAGGC
AGGAAGGATATCGGGGGTAAGGGGTTACGCCTCGCGCATGTGGTGGAGGG
CGAACGCATCCTAATTTCGAAATGAATACCCAAGCCATGGACGACACCGC
CGGGGCCATCTCCTCTAGATTGTTATCTGCGCCGCGCATGTGTTCTTAGT
TCTTCCAAGGCAGCCTTGCCGTTGCGTACATACGTATGTATATACCATAC
AGAAGGAACAACGAATGTGTGTGAACCCTTGGTCCGGTCGAAGCCACTTG
TATGCGCAGCACATACATCCGGAGTATTATTTCTACTGTATTTGGTTTTT
GTGTTTTTCTGGTACGCTCCTACCGGTAGATCTCGTCTACAAAAAAAAGT
TAACTCTGTAGAAGTTCATGCACCTAAATGTGTTTTCTCTGTGAGGAAGT
GAAGACCCACCACGTAGGTTTTGATTTCGGTCTTCGGCCACAAGAAAGTT
TATTTTTATTTGTTTATTTGGACACATGATCACATGACCGAAGTGAAGTT
GTCTTTCCTTTCCTGTCCCTTTCGTCGTGGCCACACTCGGACAAACAAAA
AAAGAAACCGTGCTACAATTTGCGTGGCTCGGGAGGCAGTGGACCTCTTG
GTCCTTCCTGTGTTTTACCACACATGGCATTCATACAATAATACATACCA
CATGTTCATGTCGAGTGTTTGTCCTCGCTTCGCCTTGCCCAAGGCGTGCG
GTTTTTTGTGTGAGGCGGCCGTTCCTTACGGCGCGAGAAGTGGCCTGCTG
TGTGTTTTTGGTGTTTTGTTGGTGCCCTCCCCTGTCTTTTTCGTTTGGCT
GCCATGCACGAACGAGCTTGTGGTGTTGATGTTGGCCCGCAGCAGATGGC
CGACTGCAGTGAAACAACAGCAGTGCAACCGTCTTTTGACCACTCAAGAC
CAATGCCGGGTGTTCGTGACCAAAAAAAGACCGAGGAGATGCATCAAATC
ATCAAATCTCCACTACTGAGTCCCGTCTCTGTTTGTACTTCGTGTCTGGA
GGTTCCGTGTTTAGTATTGGTGATTTATTTCCAAAAAGGCCGAGGTGCTC
GTGGCAACATGCCACCCGCCCTCGTTTTCAGTACAGCCGTTATTCGTCTC
CGTGTTATTTTCTTTGGTTGAAAAGGTTCTCGGTTCGGTTGCAGCAAAAC
CTGACCACGCCACGATAGCAGCAGCAGCAGTTTTCATGACCGCAGCGTGG
CCGTTGCTGCGGTGGTGTTCGGATAAAGAAGGCAACAGCACGTCACTGCC
ACACGTGTGCCCGCCTCTTTTCTGTTTCACCAAGTCCTTGTTGGCTCCAT
CGGCATGTGTGTTTTTTTGCGCGGAGGAGATTTTCTCCCTGCATTTGCGT
GATTGCTGCTCACCTGACGCGTGTGCCAAAATTACTTCTCTGTTTCGCCC
TTGCAGTAGTTGCAACCTGGGCCTCGGCTATTGCCAGACTTGCGTTTGCA
CGTACGGAGAATTCGGAAGATGAGACAAGTTTTGCTGTTTCCATTTTTAT
TTTGCGAAAAAGATTGTCTTAAACCTCACCAACACACGGTGGTTGAAAGA
TACGGAACAGCAGTTCTTCTACATGCGTTGTTCACAAGCCACAACAACCG
GTGCCCGGCACCTGCGTTTTTCTGTCCCAAATTCATCGCGTCTCTCAACT
AAAAATCTGGAGGTCTTCGCTGTTTATGTAGTGCCTCTTGGCCACAACGA
GGTCACCCGTCAGAAGAAAAGGCTAAACCGCTAAATCACATAAGCTGCAG
ACGCGCCAAGGCCCCCGTAGACGAGGAGCACAAACGTGAAAGCAAGTGCT
GTCAAGAGACGCCGCACCCGTGTCTCCTAGAATGTTCGGAAAGCTTTGCT
CCGTGCGACGCCCTCCAGCGCGTCTTTTACCACAGCAGTTCCTCATCCTT
CGTCATTCTTCGTTGTTGGCCTATCGCACCTCATGATGTCATGCCGACCT
GATCCTGCCCTAGTGTTGCAAAAAAAAAAAAAAAAGCTGGCAGATTTTCT
GCTCATGCACACCCGTGCCCGCAACTCAAGCCTCCGTTTCCCCTTCCCCT
TCCCCCCTGTATGACTCGTCTCGGCATGGGAACGCCACAACAACCGACCG
CAACGACCGACCGCAGTACGAGCGGACGGCGTTCTTCGACGCGATCATCG
AGAGGGGCCTCCGCGACGGCACCCGCTTCAACGTGGACCACGTGACGAGC
GACGAGAGGTCCAAGCTCGGCATCACCATGGACCGTGCCTCGGGAAAGTA
CTACCTCCACGCCTACGGCTCGACGCGAGGCCGCCGGAGCTCCACCCGCC
GGGGCTCGGCGACTTCTTCCGAGGGGGACCTCGACCAGCACCCGATCATC
AGGGAGCTCGGAGACCTCATCCACTCGGAGATCGAGGCAGCCGGGGATAA
CCCGGACGTCAGCTACCAGAAGTCGCGCTGCGAGCCCGGAGCCACCCGCG
GGTCCACGGTCTTAACCTTTTCGGTTACGATTCAGTCCCGTGACGACGGT
GGCGACGACAGCGGCGATGACTCGGGCAGGAGGATGGCGGGCTCGGAAAG
GGTGGGGGCGGCGGCGGCGGCGGCGGCAGCAGACGCAGGTGGTGGGAATC
CCACCGGCATGGGCACGGGTACGCCTCAGCAGCCCGGACGGCCGGCGGGG
AATGCGCCGTCGCTGGAAGCTCAGAGGCGGCACCAACAGCACCAACAGCA
ACAGCAACAGCACCAACAGCAACAGCAACAGCAGCAACCGCAGCCGGGGA
GCAACAACCGTGAGAGTTCGACGGTGGCGGCGGCGGCAGCGGCGTTGGCG
TCTGTTGCGCAAGGCGGGAAGAAGCTCAAGGCAAGGGGCAGGCCGATGGC
AAACTCCAACTCCAAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig108:32387..36802-

>mRNA_S-firma_F_contig108.1075.1 ID=mRNA_S-firma_F_contig108.1075.1|Name=mRNA_S-firma_F_contig108.1075.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1914bp|location=Sequence derived from alignment at S-firma_F_contig108:32387..36802- (Sphaerotrichia firma ET2_F female)
ATGCCGCCAGGAACCCATGCGCCGATAAAGAAGTACAACTACGAGAGATG
CCGCCAGGAACCCATGCGCCGATAAAGAAGTACAACTACGAGAGATCTCT
CTTTCGATGGGTTATGAGTCGCCATCCCGAGCCTTTCGAGGCGCACGGCA
TTAGCACCAAAACTCTGGAACGAGCCCCTCTGGCGCGCGAAGCCTTCTAC
ACGTCCAACTGGCCGGGGGCGAAGGTGCTCGTGCACTGCAGCCACGACAA
CAAGATCTCTCTTTCGATGGGTTATGAGTCGCCATCCCGAGCCTTTCGAG
GCGCACGGCATTAGCACCAAAACTCTGGAACGAGCCCCTCTGGCGCGCGA
AGCCTTCTACACGTCCAACTGGCCGGGGGCGAAGGTGCTCGTGCACTGCA
GCCACGACAACAAGTACGAGCGGACGGCGTTCTTCGACGCGATCATCGAG
AGGGGCCTCCGCGACGGCACCCGCTTCAACGTGGACCACGTGACGAGCGA
CGAGAGGTCCAAGCTCGGCATCACCATGGACCGTGCCTCGGGAAAGTACT
ACCTCCACGCCTACGGCTCGACGCGAGGCCGCCGGAGCTCCACCCGCCGG
GGCTCGGCGACTTCTTCCGAGGGGGACCTCGACCAGCACCCGATCATCAG
GGAGCTCGGAGACCTCATCCACTCGGAGATCGAGGCAGCCGGGGATAACC
CGGACGTCAGCTACCAGAAGTCGCGCTGCGAGCCCGGAGCCACCCGCGGG
TCCACGGTCTTAACCTTTTCGGTTACGATTCAGTCCCGTGACGACGGTGG
CGACGACAGCGGCGATGACTCGGGCAGGAGGATGGCGGGCTCGGAAAGGG
TGGGGGCGGCGGCGGCGGCGGCGGCAGCAGACGCAGGTGGTGGGAATCCC
ACCGGCATGGGCACGGGTACGCCTCAGCAGCCCGGACGGCCGGCGGGGAA
TGCGCCGTCGCTGGAAGCTCAGAGGCGGCACCAACAGCACCAACAGCAAC
AGCAACAGCACCAACAGCAACAGCAACAGCAGCAACCGCAGCCGGGGAGC
AACAACCGTGAGAGTTCGACGGTGGCGGCGGCGGCAGCGGCGTTGGCGTC
TGTTGCGCAAGGCGGGAAGAAGCTCAAGGCAAGGGGCAGGCCGATGGCAA
ACTCCAACTCCAAGTACGAGCGGACGGCGTTCTTCGACGCGATCATCGAG
AGGGGCCTCCGCGACGGCACCCGCTTCAACGTGGACCACGTGACGAGCGA
CGAGAGGTCCAAGCTCGGCATCACCATGGACCGTGCCTCGGGAAAGTACT
ACCTCCACGCCTACGGCTCGACGCGAGGCCGCCGGAGCTCCACCCGCCGG
GGCTCGGCGACTTCTTCCGAGGGGGACCTCGACCAGCACCCGATCATCAG
GGAGCTCGGAGACCTCATCCACTCGGAGATCGAGGCAGCCGGGGATAACC
CGGACGTCAGCTACCAGAAGTCGCGCTGCGAGCCCGGAGCCACCCGCGGG
TCCACGGTCTTAACCTTTTCGGTTACGATTCAGTCCCGTGACGACGGTGG
CGACGACAGCGGCGATGACTCGGGCAGGAGGATGGCGGGCTCGGAAAGGG
TGGGGGCGGCGGCGGCGGCGGCGGCAGCAGACGCAGGTGGTGGGAATCCC
ACCGGCATGGGCACGGGTACGCCTCAGCAGCCCGGACGGCCGGCGGGGAA
TGCGCCGTCGCTGGAAGCTCAGAGGCGGCACCAACAGCACCAACAGCAAC
AGCAACAGCACCAACAGCAACAGCAACAGCAGCAACCGCAGCCGGGGAGC
AACAACCGTGAGAGTTCGACGGTGGCGGCGGCGGCAGCGGCGTTGGCGTC
TGTTGCGCAAGGCGGGAAGAAGCTCAAGGCAAGGGGCAGGCCGATGGCAA
ACTCCAACTCCAAG
back to top