mRNA_S-firma_F_contig108.1073.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig108.1073.1
Unique NamemRNA_S-firma_F_contig108.1073.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig108.1073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig108contigS-firma_F_contig108:19167..19710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size544
Cds size471
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.1109593-UTR-S-firma_F_contig108:19166..192391622815622.1109593-UTR-S-firma_F_contig108:19166..19239Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig108 19167..19239 +
1696949460.0974026-UTR-S-firma_F_contig108:19166..192391696949460.0974026-UTR-S-firma_F_contig108:19166..19239Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig108 19167..19239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.1235006-CDS-S-firma_F_contig108:19239..197101622815622.1235006-CDS-S-firma_F_contig108:19239..19710Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 19240..19710 +
1696949460.1162744-CDS-S-firma_F_contig108:19239..197101696949460.1162744-CDS-S-firma_F_contig108:19239..19710Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 19240..19710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig108.1073.1prot_S-firma_F_contig108.1073.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig108 19240..19710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig108.1073.1

>prot_S-firma_F_contig108.1073.1 ID=prot_S-firma_F_contig108.1073.1|Name=mRNA_S-firma_F_contig108.1073.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=157bp
MLSSHAFFGPSLVCAASRFRFPSWIIVNRRTWSLPVCVMPYGARMPPAEQ
QTNRSSFRRACHGAPVSALVMSCSYLVSRQLHARSLQRGPRDITRQMVPA
PTLCADRVRVWGRPLIGLMLPHRRTTKTVPASHSTKCLRTIAIAGIHSEG
RPRHCRR
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mRNA from alignment at S-firma_F_contig108:19167..19710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig108.1073.1 ID=mRNA_S-firma_F_contig108.1073.1|Name=mRNA_S-firma_F_contig108.1073.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=544bp|location=Sequence derived from alignment at S-firma_F_contig108:19167..19710+ (Sphaerotrichia firma ET2_F female)
GAACGATTGAGTGAGAGAGTGAGTGAGTGGTTTAGGTGGTGGTCATGCTG
CCGTGCCGCGCACGTCTGCACACATGCTGTCATCGCATGCGTTTTTTGGG
CCGTCCCTAGTGTGTGCGGCGTCGAGATTTCGTTTTCCTTCGTGGATCAT
CGTGAATCGGAGAACATGGTCGCTGCCTGTGTGTGTCATGCCATACGGTG
CCAGAATGCCACCAGCCGAACAGCAGACGAATAGATCATCTTTTCGCCGT
GCGTGTCATGGCGCACCCGTATCTGCTCTTGTCATGTCATGCAGCTATCT
GGTGTCACGTCAGCTTCACGCCAGGTCGCTGCAAAGGGGGCCACGTGACA
TCACCAGGCAAATGGTACCTGCTCCTACCCTCTGCGCGGATCGAGTGCGG
GTGTGGGGCCGGCCGTTGATTGGCTTGATGTTGCCACACCGCCGAACAAC
GAAAACCGTGCCCGCTTCTCATAGCACCAAGTGCCTGCGTACCATTGCGA
TCGCAGGAATACACAGTGAAGGTCGGCCGCGCCATTGCAGACGA
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Coding sequence (CDS) from alignment at S-firma_F_contig108:19167..19710+

>mRNA_S-firma_F_contig108.1073.1 ID=mRNA_S-firma_F_contig108.1073.1|Name=mRNA_S-firma_F_contig108.1073.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=942bp|location=Sequence derived from alignment at S-firma_F_contig108:19167..19710+ (Sphaerotrichia firma ET2_F female)
ATGCTGTCATCGCATGCGTTTTTTGGGCCGTCCCTAGTGTGTGCGGCGTC
GAGATTTCGTTTTCCTTCGTGGATCATCGTGAATCGGAGAACATGGTCGC
TGCCTGTGTGTGTCATGCCATACGGTGCCAGAATGCCACCAGCCGAACAG
CAGACGAATAGATCATCTTTTCGCCGTGCGTGTCATGGCGCACCCGTATC
TGCTCTTGTCATGTCATGCAGCTATCTGGTGTCACGTCAGCTTCACGCCA
GGTCGCTGCAAAGGGGGCCACGTGACATCACCAGGCAAATGGTACCTGCT
CCTACCCTCTGCGCGGATCGAGTGCGGGTGTGGGGCCGGCCGTTGATTGG
CTTGATGTTGCCACACCGCCGAACAACGAAAACCGTGCCCGCTTCTCATA
GCACCAAGTGCCTGCGTACCATTGCGATCGCAGGAATACACAGTGAAGGT
CGGCCGCGCCATTGCAGACGAATGCTGTCATCGCATGCGTTTTTTGGGCC
GTCCCTAGTGTGTGCGGCGTCGAGATTTCGTTTTCCTTCGTGGATCATCG
TGAATCGGAGAACATGGTCGCTGCCTGTGTGTGTCATGCCATACGGTGCC
AGAATGCCACCAGCCGAACAGCAGACGAATAGATCATCTTTTCGCCGTGC
GTGTCATGGCGCACCCGTATCTGCTCTTGTCATGTCATGCAGCTATCTGG
TGTCACGTCAGCTTCACGCCAGGTCGCTGCAAAGGGGGCCACGTGACATC
ACCAGGCAAATGGTACCTGCTCCTACCCTCTGCGCGGATCGAGTGCGGGT
GTGGGGCCGGCCGTTGATTGGCTTGATGTTGCCACACCGCCGAACAACGA
AAACCGTGCCCGCTTCTCATAGCACCAAGTGCCTGCGTACCATTGCGATC
GCAGGAATACACAGTGAAGGTCGGCCGCGCCATTGCAGACGA
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