mRNA_S-firma_F_contig108.1071.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig108.1071.1
Unique NamemRNA_S-firma_F_contig108.1071.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig108.1071.1 vs. uniprot
Match: D8LKZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ0_ECTSI)

HSP 1 Score: 378 bits (970), Expect = 1.210e-129
Identity = 190/231 (82.25%), Postives = 207/231 (89.61%), Query Frame = 1 
Query:  136 PRTHPWCSIPGCTERPLRQYLSAPTNQIVFMCKTHFNTVPASTREGWKQYRGTRTFPETRIAVSCRPGPNRGHGTAAVXXXXXXXXTEVDPGYTNHPDDEKASRGASKSALWPGKVYNVLYQVWNAHAERKKISTGDGYMTSCNRAALVPEAANVLREQGLPEMANILDNTTEGARKVIHSRVLAKYLKNREAFTAKIRTIGLDPPEVAEWEAALNAAQHHADLAPSRERD 828
            P  +PWCS+ GCTERPLRQY +A + QI+FMCKTHFNTVP STREGWKQYRGTRTFPE+RIA SCRPGP RG G A  XXXXXXXX+EVDPGYTNHPDDEK +RG +KSALWPGKVYNVLYQVWNA AE+KKIS+GDGYMTS +RAALVP+AANVLREQG PEMA ILDNTTEGARKVIHSRVLAKYLKNRE F+AK+R IGLDP E+AEW+AAL AAQHHADLAP RERD
Sbjct:    2 PECYPWCSVAGCTERPLRQYTAASSKQIMFMCKTHFNTVPLSTREGWKQYRGTRTFPESRIAASCRPGPTRGLGAAXXXXXXXXXXSEVDPGYTNHPDDEKGNRGPTKSALWPGKVYNVLYQVWNAQAEQKKISSGDGYMTSSDRAALVPQAANVLREQGHPEMAIILDNTTEGARKVIHSRVLAKYLKNREIFSAKLRNIGLDPTEIAEWDAALVAAQHHADLAP-RERD 231
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BLAST of mRNA_S-firma_F_contig108.1071.1 vs. uniprot
Match: A0A6H5L718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L718_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 9.660e-107
Identity = 169/229 (73.80%), Postives = 186/229 (81.22%), Query Frame = 1 
Query:  220 VFMCKTHFNTVPASTREGWKQYRGTRTFPETRIAVSCRPGPNRGHGTAAVXXXXXXXXTEVDPGYTNHPDDEKASRGASKSALWPGKVYNVLYQVWNAHAERKKISTGDGYMTSCNRAALVPEAANVLREQGLPEMANILDNTTEGARKVIHSRVLAKYLKNREAFTAKIRTIGLDPPEVAEWEAALNAAQHHADLAPSRERDS------LTYSHSGGAHAQSPLQKDA 888
            +FMCKT FNTVP STREGWKQYRGTRTFPE+RIA SCRPGP RGHG A  XXXXX   +EVDPG+TNHPDDEK +RG + SALWPGKVYNVLYQVWNA AE+KKIS+GDGYMTS +RAALVP+AANVLR+QG PEMA ILDNTTEGARKVI SRVLAKYLKNRE F+AK+R IGLDP E+AEW+ AL AAQHHADLAP RERD       L+  H    H     + DA
Sbjct:    1 MFMCKTRFNTVPLSTREGWKQYRGTRTFPESRIAASCRPGPTRGHGAAXXXXXXX---SEVDPGHTNHPDDEKGNRGPTNSALWPGKVYNVLYQVWNAQAEQKKISSGDGYMTSSDRAALVPQAANVLRDQGHPEMATILDNTTEGARKVIRSRVLAKYLKNREVFSAKLRNIGLDPTEIAEWDVALVAAQHHADLAP-RERDQPHSAVPLSLPHHSSPHCHQQQEGDA 225
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig108.1071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKZ0_ECTSI1.210e-12982.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L718_9PHAE9.660e-10773.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig108contigS-firma_F_contig108:13781..16905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size914
Cds size912
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig108.1071.1prot_S-firma_F_contig108.1071.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig108 13781..16905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.4233766-CDS-S-firma_F_contig108:13780..140261622815622.4233766-CDS-S-firma_F_contig108:13780..14026Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 13781..14026 -
1696949460.304986-CDS-S-firma_F_contig108:13780..140261696949460.304986-CDS-S-firma_F_contig108:13780..14026Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 13781..14026 -
1622815622.4353235-CDS-S-firma_F_contig108:14365..145301622815622.4353235-CDS-S-firma_F_contig108:14365..14530Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 14366..14530 -
1696949460.3139763-CDS-S-firma_F_contig108:14365..145301696949460.3139763-CDS-S-firma_F_contig108:14365..14530Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 14366..14530 -
1622815622.4460895-CDS-S-firma_F_contig108:15006..152911622815622.4460895-CDS-S-firma_F_contig108:15006..15291Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 15007..15291 -
1696949460.3246572-CDS-S-firma_F_contig108:15006..152911696949460.3246572-CDS-S-firma_F_contig108:15006..15291Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 15007..15291 -
1622815622.4602797-CDS-S-firma_F_contig108:16689..169051622815622.4602797-CDS-S-firma_F_contig108:16689..16905Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 16690..16905 -
1696949460.3342998-CDS-S-firma_F_contig108:16689..169051696949460.3342998-CDS-S-firma_F_contig108:16689..16905Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 16690..16905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig108.1071.1

>prot_S-firma_F_contig108.1071.1 ID=prot_S-firma_F_contig108.1071.1|Name=mRNA_S-firma_F_contig108.1071.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=304bp
MAHQLGAPLPGVPPQQPQQYGHELHQQHGHEGLEELDGTRVPRNCPRTHP
WCSIPGCTERPLRQYLSAPTNQIVFMCKTHFNTVPASTREGWKQYRGTRT
FPETRIAVSCRPGPNRGHGTAAVAAAAAAAATEVDPGYTNHPDDEKASRG
ASKSALWPGKVYNVLYQVWNAHAERKKISTGDGYMTSCNRAALVPEAANV
LREQGLPEMANILDNTTEGARKVIHSRVLAKYLKNREAFTAKIRTIGLDP
PEVAEWEAALNAAQHHADLAPSRERDSLTYSHSGGAHAQSPLQKDAPGGP
ADGG
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mRNA from alignment at S-firma_F_contig108:13781..16905-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig108.1071.1 ID=mRNA_S-firma_F_contig108.1071.1|Name=mRNA_S-firma_F_contig108.1071.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3125bp|location=Sequence derived from alignment at S-firma_F_contig108:13781..16905- (Sphaerotrichia firma ET2_F female)
ATGGCTCACCAGCTCGGAGCACCGCTTCCGGGTGTGCCGCCTCAGCAGCC
CCAGCAGTATGGACACGAACTGCATCAACAGCATGGACACGAAGGCTTGG
AGGAGCTAGACGGGACGAGGGTGCCGCGTAACTGCCCTAGGACTCACCCG
TGGTGTTCCATCCCGGGTTGCACAGAACGGCCGCTTCGGCAGTATCTGTC
GGCTCCGACCAATCAGGTGCGCAGGCGTGAACGGGAGCGGAGACGAAGAT
TGTGTTGGGTAAAACATATCTTGTTCTACATTCAACCCTCCACCATCCCC
TTGCCGCGCTTCTCCCGAGTGTCTCTTCCCTCTGCCGGAGAGGGGGCGAG
GTGTACGCTCTCCCTCTCTCTCTCTCGCGAGTCGAGTGGCGTGGTCAACC
ACTGTTGAGTACTACACCACCACACAGAACCTTCGAGCACCCTACGTATA
GTTCGTCCCTTTTCAACTACTGCGTGCCACTCTCTCGACACCCTTTTCAA
CTACTACACCCGCTCTGTCTCTCCAGACTCCAACTCTCCTACACAACATG
CTTCGAAGTAATATTGTAGATGCCCCACCAGCACTAAATAATACTCGTAT
TGTGTAGATGCCCCCACCAGCACTATTCCGCGATACGTCGCCGTTTCAGG
TCACGTTCGCGAAGGGCACAGCAGATAGGGCAGTGAATTTGCACGAAAGC
CCACATGGTAGGGGCGGGTAGACGAGACTACTCTCTGCGCCTACAGACCC
CCGTTGGTTCGATCGTAAGTTGGTTCGCGAGATACACAGCAGTTCTGCTG
TTTCCGTTGACCCTCTCTGCCTCCTCTGTATGCGGTGGTGGCGTGGTGCC
CACCAGCCTGTTGGTTTTCGACGACAACTGCCACATCTCACCCCCGGAGG
CCCTCCTTTATCCTTCGACCTGACCCGGCCCGAAAAAGCTGGTTGGCGGT
GTCGAGTGTCGAGTTTGGGAACATGACAAAACATGAGAGGTCCCTTTCCC
TGCATGCCGGTGTTCGATCGTTAGCGTAATTCTCTTATTCTCTTGTGGGT
GTCCTTTCGTGCAGGATTGGTTGTGCAGCGACAGACAAAAACCTATTCCG
TCTATGATTCGTGATGCTGTCAATTGTTGTTCCAGATTGTATCGTACGGT
ATGTATTTCTAGTTTCTGAGAATCGAGTTTCCTTGTACAAGTACACCTTC
CTCCCAGGATCGTTCCCAGCGTTAGGATGTTTCTCTGCGTCGTATTCCGT
TGTACAGAGTAGCTGCGTGCCGCCGGAGCTACACGAAAGCGCTGATGTTT
CCCCGCTGGAGCGTGGTCCATCTGATCCGTTTGTAAAAGGCGATTAATCC
GTAGGTGTGACAGCATGGAAGGAACAGGGATGTCGGCGAGTCTGCGACGA
TTTCTTCGGGCGACTCTTTCCCTTGGTTCGCGGGCAGTTGTCCACCTACG
ACGCGCACCTTCCTCTGTTCGCGAAACGCGACAGATCCTGCGGACGTGAA
CACCCTAAGACAAACCAGCACTTCTCAAGGGTACCAACCCCGCTCGAGCC
TTGTGCCTTCTACCCCCGGCCCTACTCATCTCTGTTGCCCCCCCCCCACT
CCCCCCCCCCGCAGATAGTATTCATGTGCAAGACGCACTTCAACACCGTC
CCCGCCAGCACCCGCGAGGGCTGGAAGCAGTACCGCGGCACGCGCACCTT
CCCAGAAACCAGGATCGCCGTGTCGTGCAGGCCGGGCCCGAACAGGGGTC
ACGGCACGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGACGGAGGTG
GACCCCGGCTACACCAACCACCCGGACGATGAGAAGGCCAGCCGAGGCGC
GTCCAAGAGCGCTCTGTGGCCGGGAAAGGTGTACAACGTCCTGTATCAGG
TGACGGTATTTATTGTTTTGGTCGTGGTGGAAGTAGTGGTGGTGGTGGTG
GTGGTAATGGTGGTGGTAAATTGGCCGCAAAGTTTGGTAATAGAGAGCAG
GAGCTGTGGGCTTGGAGGTGTGGTGACTGCAGGAGAACAAGCTTCTCCTC
ACACACGAAGGAGTGGTACGCAGTGATTCGTTGTCACGACTGCCATGCAG
CAGCACATCTCCGTACCCTTGGTGCACACGCCCTGTTGGCGGTGGCATAC
CAGCGGCCTTCATTGCGGCGGTGTGGGCCCGCAGTCTCCACTACGGTGTT
TGGATGCTACTGTTTGTACGGCCAACTCGCCGGAAGGTTTCCGTCCGAGA
TGCGTTTCTATCGAAAACGTCCCAGAAAATTCCCTCGATGTAGTTAGCCC
GAGGGCTTCGCATCAGAACGCCTCGATATTTCCAAAACGCGGTATATTCG
GCCTCTCTTCGAAACGACGCGGCAGGTGTGGAATGCCCACGCGGAGCGAA
AGAAGATCAGCACAGGCGACGGTTACATGACATCGTGCAACCGAGCAGCG
CTGGTCCCGGAGGCGGCGAACGTCCTGCGCGAACAGGGACTCCCGGAAAT
GGCCAACATCCTGGACAACACAACTGAAGGGGCTCGCAAGGTGACGCGTC
AGAATGTTGCGTTTCCGAGTCGGGGAGAACTCGTAGAAGTGGGGTAACGC
ATTTTCAGATCCCTCTCGCCCCCGAGACACATCGCTCGAGAGTGTTCTTC
GAGAGCTTGTCTCTAGCCCCGCGCCGGAAATCGTCTCTTTCACACCATCC
GTTGTTTCGCGATGCCGCGACAACGTGTCGTAAAAATCGCGCTTTGAACA
GGGCGGGTTCTTCGAGGAGTTGGATGACTGTGAGCGCGTGAACGCTCCGC
GCGCGAGAGAGAACTAAGAACCGAAGTCGATCAAACACCAATCATGTTTT
TCGTTGCGTGCCCCCCCCCCACCTTACAGGTGATCCACAGCCGAGTGCTG
GCCAAGTACCTCAAGAACAGGGAGGCTTTCACGGCCAAGATTCGGACCAT
CGGCCTGGACCCCCCCGAGGTGGCGGAGTGGGAGGCCGCCCTCAACGCGG
CGCAGCACCACGCGGACCTCGCCCCGTCGAGAGAGCGAGACTCCTTAACC
TACTCACACTCCGGCGGCGCTCACGCTCAGTCGCCCTTGCAGAAGGACGC
CCCCGGCGGCCCCGCCGACGGCGGA
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Coding sequence (CDS) from alignment at S-firma_F_contig108:13781..16905-

>mRNA_S-firma_F_contig108.1071.1 ID=mRNA_S-firma_F_contig108.1071.1|Name=mRNA_S-firma_F_contig108.1071.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1824bp|location=Sequence derived from alignment at S-firma_F_contig108:13781..16905- (Sphaerotrichia firma ET2_F female)
ATGGCTCACCAGCTCGGAGCACCGCTTCCGGGTGTGCCGCCTCAGCAGCC
CCAGCAGTATGGACACGAACTGCATCAACAGCATGGACACGAAGGCTTGG
AGGAGCTAGACGGGACGAGGGTGCCGCGTAACTGCCCTAGGACTCACCCG
TGGTGTTCCATCCCGGGTTGCACAGAACGGCCGCTTCGGCAGTATCTGTC
GGCTCCGACCAATCAGATGGCTCACCAGCTCGGAGCACCGCTTCCGGGTG
TGCCGCCTCAGCAGCCCCAGCAGTATGGACACGAACTGCATCAACAGCAT
GGACACGAAGGCTTGGAGGAGCTAGACGGGACGAGGGTGCCGCGTAACTG
CCCTAGGACTCACCCGTGGTGTTCCATCCCGGGTTGCACAGAACGGCCGC
TTCGGCAGTATCTGTCGGCTCCGACCAATCAGATAGTATTCATGTGCAAG
ACGCACTTCAACACCGTCCCCGCCAGCACCCGCGAGGGCTGGAAGCAGTA
CCGCGGCACGCGCACCTTCCCAGAAACCAGGATCGCCGTGTCGTGCAGGC
CGGGCCCGAACAGGGGTCACGGCACGGCGGCGGTGGCGGCGGCGGCGGCG
GCGGCGGCGACGGAGGTGGACCCCGGCTACACCAACCACCCGGACGATGA
GAAGGCCAGCCGAGGCGCGTCCAAGAGCGCTCTGTGGCCGGGAAAGGTGT
ACAACGTCCTGTATCAGATAGTATTCATGTGCAAGACGCACTTCAACACC
GTCCCCGCCAGCACCCGCGAGGGCTGGAAGCAGTACCGCGGCACGCGCAC
CTTCCCAGAAACCAGGATCGCCGTGTCGTGCAGGCCGGGCCCGAACAGGG
GTCACGGCACGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGACGGAG
GTGGACCCCGGCTACACCAACCACCCGGACGATGAGAAGGCCAGCCGAGG
CGCGTCCAAGAGCGCTCTGTGGCCGGGAAAGGTGTACAACGTCCTGTATC
AGGTGTGGAATGCCCACGCGGAGCGAAAGAAGATCAGCACAGGCGACGGT
TACATGACATCGTGCAACCGAGCAGCGCTGGTCCCGGAGGCGGCGAACGT
CCTGCGCGAACAGGGACTCCCGGAAATGGCCAACATCCTGGACAACACAA
CTGAAGGGGCTCGCAAGGTGTGGAATGCCCACGCGGAGCGAAAGAAGATC
AGCACAGGCGACGGTTACATGACATCGTGCAACCGAGCAGCGCTGGTCCC
GGAGGCGGCGAACGTCCTGCGCGAACAGGGACTCCCGGAAATGGCCAACA
TCCTGGACAACACAACTGAAGGGGCTCGCAAGGTGATCCACAGCCGAGTG
CTGGCCAAGTACCTCAAGAACAGGGAGGCTTTCACGGCCAAGATTCGGAC
CATCGGCCTGGACCCCCCCGAGGTGGCGGAGTGGGAGGCCGCCCTCAACG
CGGCGCAGCACCACGCGGACCTCGCCCCGTCGAGAGAGCGAGACTCCTTA
ACCTACTCACACTCCGGCGGCGCTCACGCTCAGTCGCCCTTGCAGAAGGA
CGCCCCCGGCGGCCCCGCCGACGGCGGAGTGATCCACAGCCGAGTGCTGG
CCAAGTACCTCAAGAACAGGGAGGCTTTCACGGCCAAGATTCGGACCATC
GGCCTGGACCCCCCCGAGGTGGCGGAGTGGGAGGCCGCCCTCAACGCGGC
GCAGCACCACGCGGACCTCGCCCCGTCGAGAGAGCGAGACTCCTTAACCT
ACTCACACTCCGGCGGCGCTCACGCTCAGTCGCCCTTGCAGAAGGACGCC
CCCGGCGGCCCCGCCGACGGCGGA
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