mRNA_S-firma_F_contig1079.1056.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1079.1056.1
Unique NamemRNA_S-firma_F_contig1079.1056.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1079.1056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1079contigS-firma_F_contig1079:19476..20161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size686
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.4439406-CDS-S-firma_F_contig1079:19475..198531622815620.4439406-CDS-S-firma_F_contig1079:19475..19853Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1079 19476..19853 +
1696949458.8622677-CDS-S-firma_F_contig1079:19475..198531696949458.8622677-CDS-S-firma_F_contig1079:19475..19853Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1079 19476..19853 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.4571645-UTR-S-firma_F_contig1079:19853..201611622815620.4571645-UTR-S-firma_F_contig1079:19853..20161Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1079 19854..20161 +
1696949458.8894129-UTR-S-firma_F_contig1079:19853..201611696949458.8894129-UTR-S-firma_F_contig1079:19853..20161Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1079 19854..20161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1079.1056.1prot_S-firma_F_contig1079.1056.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1079 19476..19853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1079.1056.1

>prot_S-firma_F_contig1079.1056.1 ID=prot_S-firma_F_contig1079.1056.1|Name=mRNA_S-firma_F_contig1079.1056.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=126bp
PAPCQVPPSPRRTTGLSLHAQRHLYLQPVIEHLTREQRSLLHARLFNPKA
FVVYDVTSTVASASTVAGATESYWDVRWTLEGVLQPSIERTCECREPTTT
GVGSTSRCLCPTTGGILIHTQPRNT*
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mRNA from alignment at S-firma_F_contig1079:19476..20161+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1079.1056.1 ID=mRNA_S-firma_F_contig1079.1056.1|Name=mRNA_S-firma_F_contig1079.1056.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=686bp|location=Sequence derived from alignment at S-firma_F_contig1079:19476..20161+ (Sphaerotrichia firma ET2_F female)
CCGGCGCCGTGTCAAGTGCCACCGAGTCCTCGACGGACTACGGGATTATC
ACTGCACGCTCAAAGGCACCTTTACCTGCAACCGGTAATCGAACATCTCA
CGCGCGAACAAAGAAGCTTGCTTCATGCGAGACTATTTAATCCAAAGGCA
TTCGTCGTCTATGACGTTACCAGCACCGTTGCGAGTGCCAGCACTGTTGC
GGGTGCCACCGAGTCCTACTGGGATGTTCGCTGGACGCTCGAAGGCGTCC
TGCAGCCATCAATCGAACGCACGTGCGAGTGCCGAGAACCTACCACCACG
GGTGTGGGGAGTACATCTCGGTGCCTGTGTCCGACCACCGGTGGCATTCT
CATACATACGCAACCGAGAAACACTTGATTCTTGTCGGAGATGACACGGC
TCGAAAGGAAGAACAGCACGTGATCGATCGCGGAGAATCATCAGCGGCTG
AGTCGCGCACGGCACCCGGGAAGCACGCACTGCGTCTCAACGCAATACAG
GTACAGAACACGTTTTTCAAACGACTCAATAACGGACCCGAAAGGCAGAA
AACTCCACAAGCGGGGTGAGGCTCCCCCTCTCTCTCTCTCCCCTTCCCCC
ACCCTTCGCAAGCTCTCAATTGTTCGTGCCGACTATGGCTTGAGCAGGGC
AGTCATGTGGTTCATGCCGCAGGCGATGTGTGCTAC
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Coding sequence (CDS) from alignment at S-firma_F_contig1079:19476..20161+

>mRNA_S-firma_F_contig1079.1056.1 ID=mRNA_S-firma_F_contig1079.1056.1|Name=mRNA_S-firma_F_contig1079.1056.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=756bp|location=Sequence derived from alignment at S-firma_F_contig1079:19476..20161+ (Sphaerotrichia firma ET2_F female)
CCGGCGCCGTGTCAAGTGCCACCGAGTCCTCGACGGACTACGGGATTATC
ACTGCACGCTCAAAGGCACCTTTACCTGCAACCGGTAATCGAACATCTCA
CGCGCGAACAAAGAAGCTTGCTTCATGCGAGACTATTTAATCCAAAGGCA
TTCGTCGTCTATGACGTTACCAGCACCGTTGCGAGTGCCAGCACTGTTGC
GGGTGCCACCGAGTCCTACTGGGATGTTCGCTGGACGCTCGAAGGCGTCC
TGCAGCCATCAATCGAACGCACGTGCGAGTGCCGAGAACCTACCACCACG
GGTGTGGGGAGTACATCTCGGTGCCTGTGTCCGACCACCGGTGGCATTCT
CATACATACGCAACCGAGAAACACTTGACCGGCGCCGTGTCAAGTGCCAC
CGAGTCCTCGACGGACTACGGGATTATCACTGCACGCTCAAAGGCACCTT
TACCTGCAACCGGTAATCGAACATCTCACGCGCGAACAAAGAAGCTTGCT
TCATGCGAGACTATTTAATCCAAAGGCATTCGTCGTCTATGACGTTACCA
GCACCGTTGCGAGTGCCAGCACTGTTGCGGGTGCCACCGAGTCCTACTGG
GATGTTCGCTGGACGCTCGAAGGCGTCCTGCAGCCATCAATCGAACGCAC
GTGCGAGTGCCGAGAACCTACCACCACGGGTGTGGGGAGTACATCTCGGT
GCCTGTGTCCGACCACCGGTGGCATTCTCATACATACGCAACCGAGAAAC
ACTTGA
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