mRNA_S-firma_F_contig1078.1040.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1078.1040.1
Unique NamemRNA_S-firma_F_contig1078.1040.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1078.1040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1078contigS-firma_F_contig1078:16462..17719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size207
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1078.1040.1prot_S-firma_F_contig1078.1040.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1078 16488..17719 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.1578877-UTR-S-firma_F_contig1078:16461..164871622815619.1578877-UTR-S-firma_F_contig1078:16461..16487Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1078 16462..16487 -
1696949458.0429206-UTR-S-firma_F_contig1078:16461..164871696949458.0429206-UTR-S-firma_F_contig1078:16461..16487Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1078 16462..16487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.1722245-CDS-S-firma_F_contig1078:16487..165421622815619.1722245-CDS-S-firma_F_contig1078:16487..16542Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1078 16488..16542 -
1696949458.0540693-CDS-S-firma_F_contig1078:16487..165421696949458.0540693-CDS-S-firma_F_contig1078:16487..16542Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1078 16488..16542 -
1622815619.185792-CDS-S-firma_F_contig1078:17567..177191622815619.185792-CDS-S-firma_F_contig1078:17567..17719Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1078 17568..17719 -
1696949458.062903-CDS-S-firma_F_contig1078:17567..177191696949458.062903-CDS-S-firma_F_contig1078:17567..17719Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1078 17568..17719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1078.1040.1

>prot_S-firma_F_contig1078.1040.1 ID=prot_S-firma_F_contig1078.1040.1|Name=mRNA_S-firma_F_contig1078.1040.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=69bp
DEPTVADIENLAGRRWGFRLDFRPVGRPSLGRKGWSDAFETAAGFLGVTQ
SSLPPAPGCRGCRQGGSR*
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mRNA from alignment at S-firma_F_contig1078:16462..17719-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1078.1040.1 ID=mRNA_S-firma_F_contig1078.1040.1|Name=mRNA_S-firma_F_contig1078.1040.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1258bp|location=Sequence derived from alignment at S-firma_F_contig1078:16462..17719- (Sphaerotrichia firma ET2_F female)
GACGAACCGACGGTCGCAGATATCGAAAACTTGGCAGGCCGGAGGTGGGG
GTTCCGGCTCGATTTTCGACCTGTCGGAAGGCCGAGTTTGGGGCGGAAGG
GCTGGAGTGACGCCTTCGAAACTGCAGCAGGGTTCTTAGGAGTGACACAA
AGGTGAAGTCGGTGCTGTTCCTGAGGCGTTTGTAATGGTAGCCCCACCGT
GTGGAGGATAGTTTTCGGAGGGACTTTTGCGGGTTTCGCAGTCAGGCTTC
CCTTTTTATACTAGAAATAGTATTGCAGCTCGCTCGTTCCTTTCCCCCTA
CATTTTCGCTGTTTTAAAAAAAAAGACGTTTTTTTTTTACAAGCGACATT
GCCCACAGCAGGGTCTGAGTCTGATGGCGATCGCGAATATCCTACATACT
GCTGTATCAGGCACACGGTGGGACCGCGCCCACGGAAATTAGTAGCTAGA
TGTTTTTACGGGTGCAATTCTGTGTTTTTGCACGTTGTATGTGTATTCTC
TCTTATCAAGCAATGCTCGCGGCACTTAGACTGCTGTAGCAGTAATTTAC
GACCACTTTCTTGTCTTTGCGTTGGTGGGCCATTGTCAGCTCTCAAAAAT
ACTCCATTCTAACGTACCATTTCCTATTTCATGTGTGTGTGTGTGTGTGT
GTGTTCTTCCCATCTTATTTTGGTAACAGTCCCTCTGGTCAAGGCGAGAC
GTGTACTTCATTTGCAGTGTATTCAGAGGACTACACTTTGCAGCGTATTT
TTCTGTCCATCTGAACCAACCGGGGCACACACGAGGGGGCGAACACTGAG
GCTTTTTTTCTTTTTATATTTCTCTAATTCCCCACCTTTCCTCCTGCGGT
ACTTCCCTTCATTTTTATCGCGAGAAGGGTTCAGCCGTCCCTTTCCCTCG
TCGACTATGAAGTCGAATTTCTTGTGTAAAGATAAAGATATGGAAAAGCA
ACGAAATACCAGTGCCTTTTTTCTTTGGTAGAACATCATTCCTACAACTG
CAACCCCACTCTCGCGCTGATGCTTGTGTTCCGCCTACAACTACTCTACA
ACACGCGCGGTCCTGCTCAACGCAATCAAATGAACAAAACGAGCAAGTTT
GTAATACTTGCTGTACGCATTTATGATGCTTCGTACTCATCACCGCTTTC
CTTCCTCCCTCCCTCTTGCAACAACAGCAGCCTCCCGCCGGCTCCGGGGT
GCCGGGGCTGTAGGCAAGGTGGCTCGAGATAGAAGATCGGGGCGGCCAAG
CGGGTCAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1078:16462..17719-

>mRNA_S-firma_F_contig1078.1040.1 ID=mRNA_S-firma_F_contig1078.1040.1|Name=mRNA_S-firma_F_contig1078.1040.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=414bp|location=Sequence derived from alignment at S-firma_F_contig1078:16462..17719- (Sphaerotrichia firma ET2_F female)
GACGAACCGACGGTCGCAGATATCGAAAACTTGGCAGGCCGGAGGTGGGG
GTTCCGGCTCGATTTTCGACCTGTCGGAAGGCCGAGTTTGGGGCGGAAGG
GCTGGAGTGACGCCTTCGAAACTGCAGCAGGGTTCTTAGGAGTGACACAA
AGGACGAACCGACGGTCGCAGATATCGAAAACTTGGCAGGCCGGAGGTGG
GGGTTCCGGCTCGATTTTCGACCTGTCGGAAGGCCGAGTTTGGGGCGGAA
GGGCTGGAGTGACGCCTTCGAAACTGCAGCAGGGTTCTTAGGAGTGACAC
AAAGCAGCCTCCCGCCGGCTCCGGGGTGCCGGGGCTGTAGGCAAGGTGGC
TCGAGATAGCAGCCTCCCGCCGGCTCCGGGGTGCCGGGGCTGTAGGCAAG
GTGGCTCGAGATAG
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