mRNA_S-firma_F_contig10762.1024.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10762.1024.1
Unique NamemRNA_S-firma_F_contig10762.1024.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10762.1024.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.930e-31
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 DGMIIPARARKKRRLDEELEGLLEAMETKRKALVAVDGKLSDVAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSE 234
            DGMIIPARARKKRRLDEELEGLLEAME KRKALVAVDGKL  +AESRA K+EEMKGLERTLVQVLVEQQKKLLSLLSE
Sbjct: 2158 DGMIIPARARKKRRLDEELEGLLEAMEAKRKALVAVDGKLGGLAESRAEKEEEMKGLERTLVQVLVEQQKKLLSLLSE 2235          
BLAST of mRNA_S-firma_F_contig10762.1024.1 vs. uniprot
Match: A0A1W0A416_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A416_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.070e-12
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 DGMIIPARARKKRRLDEELEGLLEAMETKRKALVAVDGKLSDVAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLS 231
            DG +  A+  +KRRL +E E +LE +ETK+  +  +D KL ++  S+  K+EEMKGLER LVQ+LVEQQK+LLSL++
Sbjct: 1841 DGHVNQAQVARKRRLHQESEMMLETIETKKTKIRGIDAKLQELHGSQRAKEEEMKGLERQLVQILVEQQKQLLSLIT 1917          
BLAST of mRNA_S-firma_F_contig10762.1024.1 vs. uniprot
Match: A0A6G0XV59_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV59_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.000e-11
Identity = 38/77 (49.35%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 DGMIIPARARKKRRLDEELEGLLEAMETKRKALVAVDGKLSDVAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLS 231
            DG +  A+  +KRR+ +E+E +LE++ETKR  +  VD KL D+ +    K++EMK LER LVQ+LVEQQK+LL+L++
Sbjct: 1834 DGHVNQAQVARKRRMHQEMEAMLESIETKRTKVRTVDAKLQDLHKLHKQKEDEMKNLERQLVQILVEQQKQLLALVT 1910          
BLAST of mRNA_S-firma_F_contig10762.1024.1 vs. uniprot
Match: A0A7S2G7M7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7M7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.400e-11
Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 DGMIIPARARKKRRLDEELEGLLEAMETKRKALVAVDGKLSDVAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSE 234
            +G +  A ARKK+RLDEE E LL+ M  KR  +  +D K++  AE R  K++ +K LER +V+VLV+QQKKLL++L++
Sbjct:   93 EGRVNVAHARKKKRLDEEYENLLQIMHKKRDDISVLDKKIAACAERRQDKEDALKDLERQIVEVLVDQQKKLLAILTD 170          
BLAST of mRNA_S-firma_F_contig10762.1024.1 vs. uniprot
Match: A0A835YVZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.710e-11
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 DGMIIPARARKKRRLDEELEGLLEAMETKRKALVAVDGKLSDVAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLL 228
            DG +  A  R++RRLDEELE  L A+E +R  + A D +L+ + E+R  K+ EM+ LER LV VLV+QQK+LLS+L
Sbjct: 1092 DGRVSAAHQRRRRRLDEELEEALRALEGRRAEVAAADARLAQLGEARIAKEGEMQALERELVGVLVDQQKRLLSIL 1167          
BLAST of mRNA_S-firma_F_contig10762.1024.1 vs. uniprot
Match: A0A397EIE3_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EIE3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.010e-10
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 DGMIIPARARKKRRLDEELEGLLEAMETKRKALVAVDGKLSDVAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSEV 237
            DG +  A+  +KRR+ +E+E +LE +ETKR  +  ++ K  ++      K++EMKGLER LVQ+LVEQQK+LL+L++ V
Sbjct:  293 DGHVNQAQVARKRRMHQEMEAMLEGIETKRTRVRTIETKQQELQSLHKQKEDEMKGLERQLVQILVEQQKQLLTLVTSV 371          
BLAST of mRNA_S-firma_F_contig10762.1024.1 vs. uniprot
Match: A0A3R7VZ71_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7VZ71_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.160e-10
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 DGMIIPARARKKRRLDEELEGLLEAMETKRKALVAVDGKLSDVAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSEV 237
            DG +  A+  +KRR+ +E+E +LE +ETKR  +  ++ K  ++      K++EMKGLER LVQ+LVEQQK+LL+L++ V
Sbjct:  391 DGHVNQAQVARKRRMHQEMEAMLEGIETKRTRVRTIETKQQELQSLHKQKEDEMKGLERQLVQILVEQQKQLLTLVTSV 469          
BLAST of mRNA_S-firma_F_contig10762.1024.1 vs. uniprot
Match: A0A397BQY7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BQY7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.220e-10
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 DGMIIPARARKKRRLDEELEGLLEAMETKRKALVAVDGKLSDVAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSEV 237
            DG +  A+  +KRR+ +E+E +LE +ETKR  +  ++ K  ++      K++EMKGLER LVQ+LVEQQK+LL+L++ V
Sbjct:  582 DGHVNQAQVARKRRMHQEMEAMLEGIETKRTRVRTIETKQQELQSLHKQKEDEMKGLERQLVQILVEQQKQLLTLVTSV 660          
BLAST of mRNA_S-firma_F_contig10762.1024.1 vs. uniprot
Match: W4H4I1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H4I1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.320e-10
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 DGMIIPARARKKRRLDEELEGLLEAMETKRKALVAVDGKLSDVAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSEV 237
            DG +  A+  +KRR+ +E+E +LE +ETKR  +  ++ K  ++      K++EMKGLER LVQ+LVEQQK+LL+L++ V
Sbjct: 1905 DGHVNQAQVARKRRMHQEMEAMLEGIETKRTRVRTIETKQQELQSLHKQKEDEMKGLERQLVQILVEQQKQLLTLVTSV 1983          
BLAST of mRNA_S-firma_F_contig10762.1024.1 vs. uniprot
Match: A0A1V9YN76_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN76_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.530e-10
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 DGMIIPARARKKRRLDEELEGLLEAMETKRKALVAVDGKLSDVAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSEV 237
            DG +  A+  +KRRL +E E +LE ++TK+  +  ++ KL ++   +  K++EMK LER LVQ+LVEQQK+LLSL++ V
Sbjct: 1866 DGHVNQAQVARKRRLHQETEAMLETIDTKKAQIRGIESKLQELYSLQRAKEDEMKSLERHLVQILVEQQKQLLSLVTAV 1944          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10762.1024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LMX2_ECTSI1.930e-3192.31Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A1W0A416_9STRA3.070e-1251.95Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6G0XV59_9STRA2.000e-1149.35Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2G7M7_9STRA2.400e-1148.72Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YVZ6_9STRA2.710e-1151.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A397EIE3_9STRA3.010e-1045.57Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A3R7VZ71_9STRA3.160e-1045.57Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397BQY7_9STRA3.220e-1045.57Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
W4H4I1_9STRA3.320e-1045.57Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A1V9YN76_9STRA4.530e-1045.57Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10762contigS-firma_F_contig10762:129..635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LMX2
Max annot lvl2759|Eukaryota
Evalue2.26e-30
EggNOG OGs28KYD@1|root,2QTF4@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10762.1024.1prot_S-firma_F_contig10762.1024.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10762 135..635 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.9303102-UTR-S-firma_F_contig10762:128..1341622815617.9303102-UTR-S-firma_F_contig10762:128..134Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10762 129..134 +
1696949457.1794076-UTR-S-firma_F_contig10762:128..1341696949457.1794076-UTR-S-firma_F_contig10762:128..134Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10762 129..134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.9453132-CDS-S-firma_F_contig10762:134..2091622815617.9453132-CDS-S-firma_F_contig10762:134..209Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 135..209 +
1696949457.2054179-CDS-S-firma_F_contig10762:134..2091696949457.2054179-CDS-S-firma_F_contig10762:134..209Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 135..209 +
1622815617.955816-CDS-S-firma_F_contig10762:479..6351622815617.955816-CDS-S-firma_F_contig10762:479..635Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 480..635 +
1696949457.2188342-CDS-S-firma_F_contig10762:479..6351696949457.2188342-CDS-S-firma_F_contig10762:479..635Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 480..635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10762.1024.1

>prot_S-firma_F_contig10762.1024.1 ID=prot_S-firma_F_contig10762.1024.1|Name=mRNA_S-firma_F_contig10762.1024.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=77bp
MIIPARARKKRRLDEELEGLLEAMETKRKALVAVDGKLSDVAESRAVKDE
EMKGLERTLVQVLVEQQKKLLSLLSEV
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mRNA from alignment at S-firma_F_contig10762:129..635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10762.1024.1 ID=mRNA_S-firma_F_contig10762.1024.1|Name=mRNA_S-firma_F_contig10762.1024.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=507bp|location=Sequence derived from alignment at S-firma_F_contig10762:129..635+ (Sphaerotrichia firma ET2_F female)
GACGGGATGATCATCCCGGCCAGGGCTCGAAAAAAGCGACGGCTTGATGA GGAGCTGGAGGGGCTGCTGGAAGCCATGGAGGTACAATACTGCTTTGACG AATTGTAGTGCACAAATTTATCTCAGAGGTGGAAGAAAAACTGAGCCGGT TGGGTGAGGGGGGCATCCATCAGCCCAATTGCTTTATCCAATGCCGTGCG GAATTTGGAGGCTTTCATTCTTGAGTATCTGGCACGATACAGCAACACTG CGCGCCATTTTTTGACGTAGCGCTAGTGAACGCTCTGTACGTATATCTTT ACATACCTTTTGTATGTCAAACATACGAACGAATTGGATGCGATGATGCA GACGAAGCGAAAAGCGCTTGTTGCAGTGGACGGCAAGCTGAGTGACGTGG CGGAGTCGCGGGCCGTCAAGGACGAGGAGATGAAGGGCCTCGAGAGAACG CTGGTGCAGGTCTTAGTAGAGCAACAGAAGAAGCTCCTGTCACTGCTCAG CGAGGTA
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Coding sequence (CDS) from alignment at S-firma_F_contig10762:129..635+

>mRNA_S-firma_F_contig10762.1024.1 ID=mRNA_S-firma_F_contig10762.1024.1|Name=mRNA_S-firma_F_contig10762.1024.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=462bp|location=Sequence derived from alignment at S-firma_F_contig10762:129..635+ (Sphaerotrichia firma ET2_F female)
ATGATCATCCCGGCCAGGGCTCGAAAAAAGCGACGGCTTGATGAGGAGCT
GGAGGGGCTGCTGGAAGCCATGGAGATGATCATCCCGGCCAGGGCTCGAA
AAAAGCGACGGCTTGATGAGGAGCTGGAGGGGCTGCTGGAAGCCATGGAG
ACGAAGCGAAAAGCGCTTGTTGCAGTGGACGGCAAGCTGAGTGACGTGGC
GGAGTCGCGGGCCGTCAAGGACGAGGAGATGAAGGGCCTCGAGAGAACGC
TGGTGCAGGTCTTAGTAGAGCAACAGAAGAAGCTCCTGTCACTGCTCAGC
GAGGTAACGAAGCGAAAAGCGCTTGTTGCAGTGGACGGCAAGCTGAGTGA
CGTGGCGGAGTCGCGGGCCGTCAAGGACGAGGAGATGAAGGGCCTCGAGA
GAACGCTGGTGCAGGTCTTAGTAGAGCAACAGAAGAAGCTCCTGTCACTG
CTCAGCGAGGTA
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