mRNA_S-firma_F_contig10760.1023.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10760.1023.1
Unique NamemRNA_S-firma_F_contig10760.1023.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10760.1023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10760contigS-firma_F_contig10760:4146..4897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size539
Cds size312
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10760.1023.1prot_S-firma_F_contig10760.1023.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10760 4146..4670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.725402-CDS-S-firma_F_contig10760:4145..44431622815617.725402-CDS-S-firma_F_contig10760:4145..4443Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10760 4146..4443 +
1696949457.0718825-CDS-S-firma_F_contig10760:4145..44431696949457.0718825-CDS-S-firma_F_contig10760:4145..4443Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10760 4146..4443 +
1622815617.7382505-CDS-S-firma_F_contig10760:4656..46701622815617.7382505-CDS-S-firma_F_contig10760:4656..4670Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10760 4657..4670 +
1696949457.0837862-CDS-S-firma_F_contig10760:4656..46701696949457.0837862-CDS-S-firma_F_contig10760:4656..4670Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10760 4657..4670 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.7490797-UTR-S-firma_F_contig10760:4670..48971622815617.7490797-UTR-S-firma_F_contig10760:4670..4897Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10760 4671..4897 +
1696949457.097722-UTR-S-firma_F_contig10760:4670..48971696949457.097722-UTR-S-firma_F_contig10760:4670..4897Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10760 4671..4897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10760.1023.1

>prot_S-firma_F_contig10760.1023.1 ID=prot_S-firma_F_contig10760.1023.1|Name=mRNA_S-firma_F_contig10760.1023.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=104bp
ACDFSDSIPAFHAGPSTAKRQRQACRRGEFRQETQPERPATGLGSTLAWS
YPVGLSPASRIFSSVVCVVRFVGLTHAHTHASAGATQDTPRLLEERSSAG
SGA*
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mRNA from alignment at S-firma_F_contig10760:4146..4897+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10760.1023.1 ID=mRNA_S-firma_F_contig10760.1023.1|Name=mRNA_S-firma_F_contig10760.1023.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=752bp|location=Sequence derived from alignment at S-firma_F_contig10760:4146..4897+ (Sphaerotrichia firma ET2_F female)
GCGTGTGATTTTTCTGATTCCATTCCTGCCTTCCACGCAGGACCAAGCAC
CGCCAAGAGGCAACGTCAAGCGTGCAGACGCGGAGAGTTTAGGCAGGAGA
CACAGCCAGAGCGCCCCGCTACAGGCTTGGGTTCTACTCTTGCGTGGAGT
TACCCCGTTGGCCTCTCACCTGCTTCCCGGATTTTTTCTTCGGTCGTGTG
TGTGGTTCGCTTCGTTGGCTTGACTCACGCGCACACACACGCATCGGCTG
GAGCCACGCAGGACACGCCGAGGCTCCTCGAAGAGCGTTCTTCGGCAGGT
GCGAACTCGTCTTTGTCTGGGGAGGGCCCGCGCGCTGAGTTTCTGTTGCG
AGTTCTGGGAGAGAAAGTACAAACAATAGATGACAGGGCAACAAGTGCCG
ACAGTTTTTTTTTTTTCCCGAGACGCCCACAGCAGACCAACGACCCACGG
CCACGTTTTCGAACCGTCTTTCGCTCTCCCATTCCGGATCCCCGCCCTAC
GACACTCCCAGGGTCCGGCGCGTAGTCCCCGAAGGTGCGAAGCTAGCGCG
CTGTATGATTGAGGAGCGCCCGGGACGCCCACAGCAAGGGTCAGAAGAAG
AAAAAAAATAGCCTAAAATTGGCGCAGCAGGGGCAGGCAGCAACCCAATA
AAAAAGGAGCCTCCCCATTTCCAGCAACAAAGAAGGAAGTCGCCAAATAA
TCCTGGTCCGGGCGGCTCCGCACCCCGGCTTACACCGGTGCGGCCCGGGA
AC
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Coding sequence (CDS) from alignment at S-firma_F_contig10760:4146..4897+

>mRNA_S-firma_F_contig10760.1023.1 ID=mRNA_S-firma_F_contig10760.1023.1|Name=mRNA_S-firma_F_contig10760.1023.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=624bp|location=Sequence derived from alignment at S-firma_F_contig10760:4146..4897+ (Sphaerotrichia firma ET2_F female)
GCGTGTGATTTTTCTGATTCCATTCCTGCCTTCCACGCAGGACCAAGCAC
CGCCAAGAGGCAACGTCAAGCGTGCAGACGCGGAGAGTTTAGGCAGGAGA
CACAGCCAGAGCGCCCCGCTACAGGCTTGGGTTCTACTCTTGCGTGGAGT
TACCCCGTTGGCCTCTCACCTGCTTCCCGGATTTTTTCTTCGGTCGTGTG
TGTGGTTCGCTTCGTTGGCTTGACTCACGCGCACACACACGCATCGGCTG
GAGCCACGCAGGACACGCCGAGGCTCCTCGAAGAGCGTTCTTCGGCAGGC
GTGTGATTTTTCTGATTCCATTCCTGCCTTCCACGCAGGACCAAGCACCG
CCAAGAGGCAACGTCAAGCGTGCAGACGCGGAGAGTTTAGGCAGGAGACA
CAGCCAGAGCGCCCCGCTACAGGCTTGGGTTCTACTCTTGCGTGGAGTTA
CCCCGTTGGCCTCTCACCTGCTTCCCGGATTTTTTCTTCGGTCGTGTGTG
TGGTTCGCTTCGTTGGCTTGACTCACGCGCACACACACGCATCGGCTGGA
GCCACGCAGGACACGCCGAGGCTCCTCGAAGAGCGTTCTTCGGCAGGGTC
CGGCGCGTAGGGTCCGGCGCGTAG
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