mRNA_S-firma_F_contig1076.1022.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1076.1022.1 vs. uniprot
Match: A0A7S1C1L6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C1L6_9STRA) HSP 1 Score: 119 bits (297), Expect = 1.830e-28 Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 1
Query: 1 MRLLRNKAARRHLRFLRLAYGNSPPYKVLLDGAFLHGALAVSVDLEEALGRILLGA--AFSLYVTPCVLAELEALGAPTAAALEYAKSCTVHDCGHALERGDGEDAVTLNAPVCLAAVVGRSNRHKFFVATNDNDLRIRCRSVPGTPVVTLNRSVVSLEAASSLSK 492
MR+LR K R+ LRF R+ Y SPP+KVLLDG F+H L S +++ L +L L+VTPC+L EL +LGA L A++ V CGH G+D V+ A C+A+++G N+ FFVA+ D LR R R+V GTP++ L++SV+ LE S SK
Sbjct: 37 MRILRQKQHRKILRFYRMMYNVSPPFKVLLDGNFIHIGLRTSAEIKRLLPSLLQERPDVVRLFVTPCILNELRSLGAEFGDTLAEARTFRVARCGH------GDDPVS--AAECIASLIGTKNKEHFFVASQDGLLRSRLRAVAGTPIILLSQSVLVLEQPSDASK 194
BLAST of mRNA_S-firma_F_contig1076.1022.1 vs. uniprot
Match: A0A7S2B5Q5_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B5Q5_9STRA) HSP 1 Score: 111 bits (278), Expect = 3.490e-26 Identity = 69/175 (39.43%), Postives = 95/175 (54.29%), Query Frame = 1
Query: 1 MRLLRNKAARRHLRFLRLAYGNSPPYKVLLDGAFLHGALAVSVDLEEALGRILLGAAFSLYVTPCVLAELEALGAPTAAALEYA-KSCTVHDCGHALERGDGEDAVTLNAPVCLAAVVGRSNRHKFFVATNDNDLRIRCRSVPGTPVVTLNRSVVSLEAASSLSKDHAVTAEATK 522
MRLLR K AR+ L F RL +G SPPY+VLLDG F+H + +D+ LG+ L G F LYV CV++ELE LG AL +A ++C V C A G + ++G N + VA+ D DLR R++PG P++ + R+V+ LE+ SK V E K
Sbjct: 1 MRLLRGKKARKTLAFFRLNFGISPPYRVLLDGNFIHECTSYKIDILARLGKQLGGEKFMLYVPSCVISELEMLGTNMKPALTFALENCEVVACDSAESCSAG-----------ILGLIGEKNAEGYLVASQDEDLRCELRAIPGVPLMFIKRTVLILESTGHASKTATVQMETKK 164
BLAST of mRNA_S-firma_F_contig1076.1022.1 vs. uniprot
Match: A0A812M2D3_9DINO (Utp23 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812M2D3_9DINO) HSP 1 Score: 105 bits (262), Expect = 2.840e-24 Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = 1
Query: 1 MRLLRNKAARRHLRFLRLAYGNSPPYKVLLDGAFLHGALAVSVDLEEALGRILLGAAFSLYVTPCVLAELEALGAPTAAALEYAKSCTVHDCGHALERGDGEDAVTLNAPVCLAAVVGRSNRHKFFVATNDNDLRIRCRSVPGTPVVTLNRSVVSLE 471
MR+ R+K RR LRF RL +G PY VL+DG FL AL V ++E L ++L G + T C+LAEL +LG A+ +K CGH D + A C+ +G++N +FFVAT D DLR++ RSVPG P++ LN V LE
Sbjct: 1 MRVKRHKNHRRILRFFRLTFGIQEPYHVLVDGTFLTHALQQRVHVKEQLPKMLEGRTTPM-TTGCILAELRSLGDRALGAVVVSKGYYRVKCGH--------DENPVGASQCIREQIGKTNARRFFVATQDPDLRLQLRSVPGVPLIRLNGPVPQLE 148
BLAST of mRNA_S-firma_F_contig1076.1022.1 vs. uniprot
Match: A0A2P6VN56_9CHLO (rRNA-processing UTP23-like protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VN56_9CHLO) HSP 1 Score: 105 bits (263), Expect = 1.040e-23 Identity = 90/241 (37.34%), Postives = 126/241 (52.28%), Query Frame = 1
Query: 1 MRLLRNKAARRHLRFLRLAYGNSPPYKVLLDGAFLHGALAVSV-DLEEALGRILLGAAFSLYVTPCVLAELEALGAPTAAALEYAKSCTVHDCGHALERGDGEDAVTLNAPVCLAAVVGRSNRHKFFVATNDNDLRIRCRSVPGTPVVTLNRSVVSLEAASSLSKDHAVTAEATKSKSAKHEVKALQKEAKKRVADALALPGARAGAGVEPDDEPAAPVPKKRRRKGPKQPNPLSIKKKQK 720
MR ++KA RR LRF R+++G PYKVLLDG F+H + D ++ + R LLG A Y TPCV EL+ LG A + K +H CGH ER +A CL A +G N FFVAT D L+ +C +VPG V+ + + + LE S+L + AK + + + +A++R ++AL GA AG +P D P RR K PNPL+++KKQK
Sbjct: 1 MRRKKHKATRRALRFYRISHGFRQPYKVLLDGNFVHALQEMRKGDAKDLIFR-LLGDAVKCYTTPCVQGELKKLGKDFNGARQALKQFPLHKCGHE-ER--------CSAAECLLAQLGDKNEEHFFVATQDKALQRQCMAVPGGAVLFASVNGLHLEQPSALQRQAVA---------AKEQQQLVPSQAERR---SVALAGAEGEAG-QPRDRPLF------RRHKAKGPNPLAVRKKQK 212
BLAST of mRNA_S-firma_F_contig1076.1022.1 vs. uniprot
Match: A0A2P6TNS3_CHLSO (rRNA-processing UTP23-like protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TNS3_CHLSO) HSP 1 Score: 103 bits (256), Expect = 8.740e-23 Identity = 71/168 (42.26%), Postives = 92/168 (54.76%), Query Frame = 1
Query: 1 MRLLRNKAARRHLRFLRLAYGNSPPYKVLLDGAFLHGALAVSV-DLEEALGRILLGAAFSLYVTPCVLAELEALGAPTAAALEYAKSCTVHDCGHALERGDGEDAVTLNAPVCLAAVVGRSNRHKFFVATNDNDLRIRCRSVPGTPVVTLNRSVVSLEAASSLSKDHA 501
MR ++K RR LRF R+ +G PPYKVLLDG F+H + + ++ +GR LLG A Y TPCV AEL+ LG +AA + K +H CGH ED + A CL A +G N FFVAT D L+ C +VPG V+ + + V LE S L K A
Sbjct: 1 MRRKKHKHTRRALRFYRITHGFRPPYKVLLDGNFVHALDQMKKGESKDLIGR-LLGDAVKCYTTPCVQAELKKLGKDFSAARQLLKRYPLHKCGH-------EDKCS--AADCLKAQLGDKNGEHFFVATQDRALQRACMAVPGGAVLFASVNGVHLETPSELQKQAA 158
BLAST of mRNA_S-firma_F_contig1076.1022.1 vs. uniprot
Match: A0A4Y7JR16_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JR16_PAPSO) HSP 1 Score: 102 bits (254), Expect = 1.640e-22 Identity = 83/247 (33.60%), Postives = 126/247 (51.01%), Query Frame = 1
Query: 1 MRLLRNKAARRHLRFLRLAYGNSPPYKVLLDGAFLHGALAVSV-DLEEALGRILLGAAFSLYVTPCVLAELEALGAPTAAALEYAKSCTVHDCGHALERGDGEDAVTLNAPVCLAAVVGRSNRHKFFVATNDNDLRIRCRSVPGTPVVTLNRSVVSLEAASSLSKDHAVTAEATKSKSAKHEVKALQKEAKKRVADALALPGARA---GAGVEPDDEPAAPVPKKR-----RRKGPKQPNPLSIKKK 714
M++ R K R+++RF +G PYKV DG F+H + + D +A+ IL G L+ T CV+AEL +LG + + E A++ ++ C H +G A C+A V+G N FF+AT DN+LRIR R VPG P++ R + LE S+ ++ ++E + + + E K L K ++A P + A +G E + VP+K +R PK PNPLS KKK
Sbjct: 1 MKVKRMKHHRKYVRFYTTCFGFREPYKVFCDGTFIHHLVTNQITDFSQAISNIL-GKPAKLFTTRCVIAELHSLGESFSKSFEEARNLSLARCDHEKRKG---------AAACIADVIGEKNSEHFFLATQDNELRIRFREVPGVPLIFGLRKSLILEPPSTSQREFVKSSEEQRLRMTEME-KTLLKRGISKIATEDGDPTSDAHEEASGNEVVPDAFISVPRKTDGPQFKRNKPKGPNPLSCKKK 236
BLAST of mRNA_S-firma_F_contig1076.1022.1 vs. uniprot
Match: UPI001CF12759 (rRNA-processing protein UTP23 homolog n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF12759) HSP 1 Score: 100 bits (249), Expect = 5.660e-22 Identity = 61/186 (32.80%), Postives = 105/186 (56.45%), Query Frame = 1
Query: 1 MRLLRNKAARRHLRFLRLAYGNSPPYKVLLDGAFLHGALAVSVDLEEALGRILLGAAFSLYVTPCVLAELEALGAPTAAALEYAKSCTVHDCGHALERGDGEDAVTLNAPVCLAAVVGRSNRHKFFVATNDNDLRIRCRSVPGTPVVTLNRSVVSLEAASSLSKDHAVTAEATKSKSAKHEVKALQ 558
M++ R K A++ L + ++G + P+++L+DG F AL ++E L + L G L+ TPCV+AE +ALG A AL AK+ +H C H V + A C+ +++G N +++F+A+ D +LR RS+PG P++ ++R + LE S++S + E + + +KHE K L+
Sbjct: 6 MKVKRMKNAKKCLILFKNSFGFAQPFQILVDGTFCQAALQSRTQIKEQLPKFLDGT-IQLFTTPCVIAEAQALGPQLAGALFIAKTFKLHKCSH--------KDVAVPAANCIKSMIGTDNPNRYFLASQDINLRRSLRSIPGVPILYIHRGTLLLEKPSAISNTVSSKVEKSLLEPSKHEKKILK 182
BLAST of mRNA_S-firma_F_contig1076.1022.1 vs. uniprot
Match: A0A812XR55_9DINO (UTP23 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XR55_9DINO) HSP 1 Score: 100 bits (250), Expect = 6.470e-22 Identity = 64/157 (40.76%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 1 MRLLRNKAARRHLRFLRLAYGNSPPYKVLLDGAFLHGALAVSVDLEEALGRILLGAAFSLYVTPCVLAELEALGAPTAAALEYAKSCTVHDCGHALERGDGEDAVTLNAPVCLAAVVGRSNRHKFFVATNDNDLRIRCRSVPGTPVVTLNRSVVSLE 471
MR+ R+K RR LRF RL +G PY VL+DG FL AL + ++E L ++L G + T C+LAEL +LG A AK CGH D + A C+ +GR+N +FFVAT D +LR + R VPG P++ LN V LE
Sbjct: 1 MRVKRHKNHRRILRFFRLTFGIQEPYHVLVDGTFLTHALQQRIHVKEQLPKMLEGRTTPM-TTGCILAELRSLGDRALGAAVIAKGYYRVKCGH--------DEHPIGASKCILEQIGRTNDRRFFVATQDPELRQQLRGVPGVPLMRLNGPVPQLE 148
BLAST of mRNA_S-firma_F_contig1076.1022.1 vs. uniprot
Match: E1ZC75_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZC75_CHLVA) HSP 1 Score: 100 bits (249), Expect = 9.190e-22 Identity = 89/239 (37.24%), Postives = 115/239 (48.12%), Query Frame = 1
Query: 1 MRLLRNKAARRHLRFLRLAYGNSPPYKVLLDGAFLHGALAVSV-DLEEALGRILLGAAFSLYVTPCVLAELEALGAPTAAALEYAKSCTVHDCGHALERGDGEDAVTLNAPVCLAAVVGRSNRHKFFVATNDNDLRIRCRSVPGTPVVTLNRSVVSLEAASSLSKDHAVTAEATKSKSAKHEVKA---LQKEAKKRVADALALPGARAGAGVEPDDEPAAPVPKKRRRKGPKQPNPLSI 705
MR ++K RR LRF R+ +G PPYKVLLDG F+H A+ + ++ +GR LLG A Y T CV EL+ LG + K +H CGH ER D CL A +G N F VAT D L+ RC +VPG V+ + + V LE S++ K A K + +H V + LQ A + VA A EP D P RRK K PNPLS+
Sbjct: 1 MRRKKHKHTRRTLRFYRIQHGFRPPYKVLLDGNFVHALEAMKKGESKDLIGR-LLGEAVKCYTTLCVQGELKKLGKDFTGIRQVLKHYPLHKCGHE-ERCSAAD--------CLLAQLGDKNEEHFLVATQDKALQRRCMAVPGGAVLFASVNGVHLETPSAMQKQQA------KQEEQRHLVPSQAELQTAALREVA-----------AAREPADRPLV------RRKKAKGPNPLSL 206
BLAST of mRNA_S-firma_F_contig1076.1022.1 vs. uniprot
Match: A0A1Q9CNM5_SYMMI (UTP23 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CNM5_SYMMI) HSP 1 Score: 101 bits (252), Expect = 1.170e-21 Identity = 64/157 (40.76%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 1 MRLLRNKAARRHLRFLRLAYGNSPPYKVLLDGAFLHGALAVSVDLEEALGRILLGAAFSLYVTPCVLAELEALGAPTAAALEYAKSCTVHDCGHALERGDGEDAVTLNAPVCLAAVVGRSNRHKFFVATNDNDLRIRCRSVPGTPVVTLNRSVVSLE 471
MR+ R+K RR LRF RL +G PY VL+DG FL AL + ++E L ++L G + T C+LAEL +LG A AK CGH D + A C+ +GR+N +FFVAT D +LR RS+PG P++ LN V LE
Sbjct: 79 MRVKRHKNHRRILRFFRLTFGIQEPYHVLVDGTFLTHALQQRIHVKEQLPKMLEGRTTPM-TTGCILAELRSLGDRALGAAVIAKGYYRVKCGH--------DEHPIGASKCILEQIGRTNDRRFFVATQDPELRQELRSIPGVPLMRLNGPVPQLE 226 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1076.1022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1076.1022.1 >prot_S-firma_F_contig1076.1022.1 ID=prot_S-firma_F_contig1076.1022.1|Name=mRNA_S-firma_F_contig1076.1022.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=242bp MRLLRNKAARRHLRFLRLAYGNSPPYKVLLDGAFLHGALAVSVDLEEALGback to top mRNA from alignment at S-firma_F_contig1076:24426..25306- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1076.1022.1 ID=mRNA_S-firma_F_contig1076.1022.1|Name=mRNA_S-firma_F_contig1076.1022.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=881bp|location=Sequence derived from alignment at S-firma_F_contig1076:24426..25306- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1076:24426..25306- >mRNA_S-firma_F_contig1076.1022.1 ID=mRNA_S-firma_F_contig1076.1022.1|Name=mRNA_S-firma_F_contig1076.1022.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1452bp|location=Sequence derived from alignment at S-firma_F_contig1076:24426..25306- (Sphaerotrichia firma ET2_F female)back to top |