mRNA_S-firma_F_contig10752.1017.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10752.1017.1
Unique NamemRNA_S-firma_F_contig10752.1017.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10752.1017.1 vs. uniprot
Match: D8LTC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTC2_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.640e-18
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 2 
Query:   29 MAGGPAEMKVLGMLWKQAATGMAIGGAAAIAYYQFVSKQDTVKIAAYYAKQDAS 190
            MAGGPAEMKVLGMLWKQAATG+AIG +AA  YYQ V+KQD +KI AYYAKQDA+
Sbjct:    1 MAGGPAEMKVLGMLWKQAATGIAIGASAAFVYYQAVTKQDAIKIDAYYAKQDAA 54
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BLAST of mRNA_S-firma_F_contig10752.1017.1 vs. uniprot
Match: A0A6H5JP40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP40_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.790e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 2 
Query:   29 MAGGPAEMKVLGMLWKQAATGMAIGGAAAIAYYQFVSKQDTVKIAAYYAKQDAS 190
            MAGGPAEMKVLGMLWKQAATG+AIG +AA  YYQ V+KQD +KI  YY KQD +
Sbjct:    1 MAGGPAEMKVLGMLWKQAATGVAIGASAAFVYYQGVTKQDGIKIEGYYTKQDTA 54
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10752.1017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTC2_ECTSI2.640e-1879.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP40_9PHAE2.790e-1674.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10752contigS-firma_F_contig10752:3432..4337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size906
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10752.1017.1prot_S-firma_F_contig10752.1017.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10752 3460..3633 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.2986796-UTR-S-firma_F_contig10752:3431..34591622815617.2986796-UTR-S-firma_F_contig10752:3431..3459Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10752 3432..3459 +
1696949456.8241177-UTR-S-firma_F_contig10752:3431..34591696949456.8241177-UTR-S-firma_F_contig10752:3431..3459Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10752 3432..3459 +
1622815617.324028-UTR-S-firma_F_contig10752:3633..43371622815617.324028-UTR-S-firma_F_contig10752:3633..4337Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10752 3634..4337 +
1696949456.8458798-UTR-S-firma_F_contig10752:3633..43371696949456.8458798-UTR-S-firma_F_contig10752:3633..4337Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10752 3634..4337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.3129678-CDS-S-firma_F_contig10752:3459..36331622815617.3129678-CDS-S-firma_F_contig10752:3459..3633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10752 3460..3633 +
1696949456.8353026-CDS-S-firma_F_contig10752:3459..36331696949456.8353026-CDS-S-firma_F_contig10752:3459..3633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10752 3460..3633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10752.1017.1

>prot_S-firma_F_contig10752.1017.1 ID=prot_S-firma_F_contig10752.1017.1|Name=mRNA_S-firma_F_contig10752.1017.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=58bp
MAGGPAEMKVLGMLWKQAATGMAIGGAAAIAYYQFVSKQDTVKIAAYYAK
QDASKES*
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mRNA from alignment at S-firma_F_contig10752:3432..4337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10752.1017.1 ID=mRNA_S-firma_F_contig10752.1017.1|Name=mRNA_S-firma_F_contig10752.1017.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=906bp|location=Sequence derived from alignment at S-firma_F_contig10752:3432..4337+ (Sphaerotrichia firma ET2_F female)
AGGTACACACAGGAAACCGACGACAAAAATGGCTGGGGGACCCGCGGAGA
TGAAGGTGTTGGGTATGTTGTGGAAGCAGGCGGCGACCGGCATGGCGATC
GGCGGAGCGGCGGCCATCGCTTACTACCAATTCGTGTCCAAGCAGGACAC
GGTCAAGATCGCGGCGTACTACGCAAAGCAGGACGCATCTAAAGAGTCGT
AGTTGCAAAAAGGGAGGAATAAAGAAGAATCAAAGGTTTGCTTGATTGTT
GCTGCTTGTGATGAGCGCTTAGTCGTCCCTGGGTGGGAATGTGCTGGTCG
CACACGAAGCGCACGACTCATGTCTCATGGAGGCACGTTCTTCTTATGTG
TTGGGTTTTATGTTTCGCCGGGGACGGGCCAACTCACCACTACGGCGATG
CTAGGTGGTGACGGGTGGGCGCTGTATTTGTTGTTCGTGTTTGAGCGTGC
GCACGCGGGGAGGAGTTCAAAAGGACCCGATGGAAGCGACTAGGTCGACC
GCTAGCTTTTCGGCACAACAGGCAGAGGAGCAACAGCAGTCTAGATGTCT
ATCGGGATTCGAAAGTCTTGTCATACTTGTGGACGGGATGGGCCCATGGC
CAAAGCGTTACTCTGCGCCTCTTCTTTAGCGTAGTAAGAAGGCTTAGTCA
TGCGTGGGAGGAACCGTAGGGTAGGTGGATGCGTGGGGGACTACAGCAGT
AGCCTTGACGTTGTTGGTAAAAACTTTACACACTGAACAATGGACTCTTC
TGCATCTCTCCTTGCGCGTGTAGTGACAACGAGGTTATTTGAACCACGAT
CTACAGACTATATTGGATTATCGACGCTGCCACCACAAATCACGTCCCAG
AGAACGGCTGCCTTGCGCTGGTCGAGAGGTACGGTCTACTCAAGAATCGA
TACCCA
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Coding sequence (CDS) from alignment at S-firma_F_contig10752:3432..4337+

>mRNA_S-firma_F_contig10752.1017.1 ID=mRNA_S-firma_F_contig10752.1017.1|Name=mRNA_S-firma_F_contig10752.1017.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=348bp|location=Sequence derived from alignment at S-firma_F_contig10752:3432..4337+ (Sphaerotrichia firma ET2_F female)
ATGGCTGGGGGACCCGCGGAGATGAAGGTGTTGGGTATGTTGTGGAAGCA
GGCGGCGACCGGCATGGCGATCGGCGGAGCGGCGGCCATCGCTTACTACC
AATTCGTGTCCAAGCAGGACACGGTCAAGATCGCGGCGTACTACGCAAAG
CAGGACGCATCTAAAGAGTCGTAGATGGCTGGGGGACCCGCGGAGATGAA
GGTGTTGGGTATGTTGTGGAAGCAGGCGGCGACCGGCATGGCGATCGGCG
GAGCGGCGGCCATCGCTTACTACCAATTCGTGTCCAAGCAGGACACGGTC
AAGATCGCGGCGTACTACGCAAAGCAGGACGCATCTAAAGAGTCGTAG
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