mRNA_S-firma_F_contig10749.1011.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10749.1011.1
Unique NamemRNA_S-firma_F_contig10749.1011.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10749.1011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10749contigS-firma_F_contig10749:2685..3233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size549
Cds size375
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.5256374-UTR-S-firma_F_contig10749:2684..28581622815616.5256374-UTR-S-firma_F_contig10749:2684..2858Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10749 2685..2858 +
1696949456.3359573-UTR-S-firma_F_contig10749:2684..28581696949456.3359573-UTR-S-firma_F_contig10749:2684..2858Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10749 2685..2858 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.5366077-CDS-S-firma_F_contig10749:2858..32331622815616.5366077-CDS-S-firma_F_contig10749:2858..3233Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10749 2859..3233 +
1696949456.3458657-CDS-S-firma_F_contig10749:2858..32331696949456.3458657-CDS-S-firma_F_contig10749:2858..3233Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10749 2859..3233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10749.1011.1prot_S-firma_F_contig10749.1011.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10749 2859..3233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10749.1011.1

>prot_S-firma_F_contig10749.1011.1 ID=prot_S-firma_F_contig10749.1011.1|Name=mRNA_S-firma_F_contig10749.1011.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=125bp
MITRAATPRTVLSSLLSVEKDSLHTLTSARANDDGKQLPAEHALGEHAEA
QAHRPTDNSTARTGKQKKQRMRCPARHDQHCPAAPPSPSPSPPPLPSPLS
SPSPSPSLTRRRKPPCTSQGSAPAE
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mRNA from alignment at S-firma_F_contig10749:2685..3233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10749.1011.1 ID=mRNA_S-firma_F_contig10749.1011.1|Name=mRNA_S-firma_F_contig10749.1011.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=549bp|location=Sequence derived from alignment at S-firma_F_contig10749:2685..3233+ (Sphaerotrichia firma ET2_F female)
AGCTCGGCCTCGTAGAAGAACTCCTTCTCCCCGAACGCTGGGCGCAGGTC
ATCTAGCCACGTCGCCTGATCGTCGAACCTGCCAGGACCAAACACAGCGA
GCACCCCGAGGGGGGGTTAGCAAGTAAGTGTTGCTTAGCGTCAGTATGTT
TTCCACCGAGCTAATCGCGACAGAATGATAACTCGCGCTGCGACACCTCG
CACCGTTTTGTCTAGTCTTCTGTCTGTAGAAAAAGATTCACTACACACCC
TCACCTCGGCACGGGCGAACGACGACGGCAAACAACTACCCGCCGAGCAC
GCGCTTGGCGAACACGCTGAAGCGCAGGCACACCGACCGACAGACAACAG
CACAGCACGCACTGGCAAACAAAAAAAGCAAAGAATGCGCTGCCCAGCGC
GCCACGACCAACACTGCCCTGCTGCACCACCATCACCATCACCATCACCA
CCACCATTGCCATCGCCATTGTCATCGCCATCACCATCACCATCACTTAC
TCGGCGAAGAAAACCTCCTTGCACCAGTCAGGGTTCCGCGCCTGCAGAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10749:2685..3233+

>mRNA_S-firma_F_contig10749.1011.1 ID=mRNA_S-firma_F_contig10749.1011.1|Name=mRNA_S-firma_F_contig10749.1011.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=750bp|location=Sequence derived from alignment at S-firma_F_contig10749:2685..3233+ (Sphaerotrichia firma ET2_F female)
ATGATAACTCGCGCTGCGACACCTCGCACCGTTTTGTCTAGTCTTCTGTC
TGTAGAAAAAGATTCACTACACACCCTCACCTCGGCACGGGCGAACGACG
ACGGCAAACAACTACCCGCCGAGCACGCGCTTGGCGAACACGCTGAAGCG
CAGGCACACCGACCGACAGACAACAGCACAGCACGCACTGGCAAACAAAA
AAAGCAAAGAATGCGCTGCCCAGCGCGCCACGACCAACACTGCCCTGCTG
CACCACCATCACCATCACCATCACCACCACCATTGCCATCGCCATTGTCA
TCGCCATCACCATCACCATCACTTACTCGGCGAAGAAAACCTCCTTGCAC
CAGTCAGGGTTCCGCGCCTGCAGAAATGATAACTCGCGCTGCGACACCTC
GCACCGTTTTGTCTAGTCTTCTGTCTGTAGAAAAAGATTCACTACACACC
CTCACCTCGGCACGGGCGAACGACGACGGCAAACAACTACCCGCCGAGCA
CGCGCTTGGCGAACACGCTGAAGCGCAGGCACACCGACCGACAGACAACA
GCACAGCACGCACTGGCAAACAAAAAAAGCAAAGAATGCGCTGCCCAGCG
CGCCACGACCAACACTGCCCTGCTGCACCACCATCACCATCACCATCACC
ACCACCATTGCCATCGCCATTGTCATCGCCATCACCATCACCATCACTTA
CTCGGCGAAGAAAACCTCCTTGCACCAGTCAGGGTTCCGCGCCTGCAGAA
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