mRNA_S-firma_F_contig10745.1007.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10745.1007.1
Unique NamemRNA_S-firma_F_contig10745.1007.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10745.1007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10745contigS-firma_F_contig10745:4650..4970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog61273.S3CCN2
PFAMsC2
Max annot lvl4751|Fungi
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005826,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007016,GO:0007049,GO:0008104,GO:0008150,GO:0008289,GO:0009987,GO:0012505,GO:0015629,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0031566,GO:0032153,GO:0032155,GO:0032187,GO:0032189,GO:0032506,GO:0032507,GO:0033036,GO:0034613,GO:0036212,GO:0036214,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043954,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044837,GO:0045185,GO:0051179,GO:0051235,GO:0051286,GO:0051301,GO:0051641,GO:0051651,GO:0061640,GO:0065007,GO:0065008,GO:0070727,GO:0070938,GO:0071840,GO:0071944,GO:0099568,GO:0120105,GO:1902405,GO:1902410,GO:1903047,GO:1903474
Evalue6.98e-07
EggNOG OGs296JY@1|root,2RDJ2@2759|Eukaryota,38GS6@33154|Opisthokonta,3P04J@4751|Fungi,3QNJD@4890|Ascomycota,2117D@147550|Sordariomycetes,3UR90@5151|Ophiostomatales
DescriptionProtein kinase C conserved region 2 (CalB)
COG categoryS
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.297002-CDS-S-firma_F_contig10745:4649..49701622815616.297002-CDS-S-firma_F_contig10745:4649..4970Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10745 4650..4970 -
1696949456.1796587-CDS-S-firma_F_contig10745:4649..49701696949456.1796587-CDS-S-firma_F_contig10745:4649..4970Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10745 4650..4970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10745.1007.1prot_S-firma_F_contig10745.1007.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10745 4650..4970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10745.1007.1

>prot_S-firma_F_contig10745.1007.1 ID=prot_S-firma_F_contig10745.1007.1|Name=mRNA_S-firma_F_contig10745.1007.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=107bp
YVKAYVGRDFKSTRCDIEGHDHAHWNAPLEFDAITPRDSLRLDVRSATMM
NRDILGSTTIHLDGVRGTGLPPKYHRLTYKGNRVGEMRVKIECVCAPPKP
TNPPRR*
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mRNA from alignment at S-firma_F_contig10745:4650..4970-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10745.1007.1 ID=mRNA_S-firma_F_contig10745.1007.1|Name=mRNA_S-firma_F_contig10745.1007.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=321bp|location=Sequence derived from alignment at S-firma_F_contig10745:4650..4970- (Sphaerotrichia firma ET2_F female)
TACGTCAAGGCGTACGTCGGGCGTGACTTTAAAAGCACGCGGTGCGACAT
TGAGGGCCACGACCACGCCCACTGGAACGCGCCCCTGGAGTTTGACGCCA
TCACGCCACGGGACAGCCTGCGCTTGGACGTGCGCAGCGCCACAATGATG
AATCGGGACATTTTGGGTTCGACGACCATCCACTTGGACGGCGTGAGGGG
GACCGGCCTGCCGCCCAAGTACCACAGGTTGACGTACAAAGGCAACCGAG
TGGGGGAAATGCGTGTGAAGATTGAGTGCGTGTGTGCCCCCCCCAAACCC
ACCAACCCCCCCCGTCGATAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10745:4650..4970-

>mRNA_S-firma_F_contig10745.1007.1 ID=mRNA_S-firma_F_contig10745.1007.1|Name=mRNA_S-firma_F_contig10745.1007.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=642bp|location=Sequence derived from alignment at S-firma_F_contig10745:4650..4970- (Sphaerotrichia firma ET2_F female)
TACGTCAAGGCGTACGTCGGGCGTGACTTTAAAAGCACGCGGTGCGACAT
TGAGGGCCACGACCACGCCCACTGGAACGCGCCCCTGGAGTTTGACGCCA
TCACGCCACGGGACAGCCTGCGCTTGGACGTGCGCAGCGCCACAATGATG
AATCGGGACATTTTGGGTTCGACGACCATCCACTTGGACGGCGTGAGGGG
GACCGGCCTGCCGCCCAAGTACCACAGGTTGACGTACAAAGGCAACCGAG
TGGGGGAAATGCGTGTGAAGATTGAGTGCGTGTGTGCCCCCCCCAAACCC
ACCAACCCCCCCCGTCGATAATACGTCAAGGCGTACGTCGGGCGTGACTT
TAAAAGCACGCGGTGCGACATTGAGGGCCACGACCACGCCCACTGGAACG
CGCCCCTGGAGTTTGACGCCATCACGCCACGGGACAGCCTGCGCTTGGAC
GTGCGCAGCGCCACAATGATGAATCGGGACATTTTGGGTTCGACGACCAT
CCACTTGGACGGCGTGAGGGGGACCGGCCTGCCGCCCAAGTACCACAGGT
TGACGTACAAAGGCAACCGAGTGGGGGAAATGCGTGTGAAGATTGAGTGC
GTGTGTGCCCCCCCCAAACCCACCAACCCCCCCCGTCGATAA
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