mRNA_S-firma_F_contig10741.1005.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10741.1005.1
Unique NamemRNA_S-firma_F_contig10741.1005.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10741.1005.1 vs. uniprot
Match: D8LSE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE7_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 7.970e-38
Identity = 97/176 (55.11%), Postives = 112/176 (63.64%), Query Frame = 1 
Query:  601 RVGTRLNRP-TGGRG-----------GGSRSSPGGRGRVKKSGQAAEAAAADWRDDELDGKSRSFLFVKEVKGIPKWNGAKVMKVLEEAHRLS-----GADDDSGGSADAXXXXXXXXXXXRNGGRGGAKKLEMTSFMYNACISHMSMCGRWQEALQVLDLMRAVEFPPDEFCVTA 1077
            R+GTRLNRP +GGRG             S +  GGR   K+    +    A WRD +LDGKSRSFLFVKE+K IPKWNG +VM VL+EA RLS      A  D GG+ADA           R G       LEMTSFMYNACISHMS CGRWQ+AL++L+LMRA +FPPDEFCVTA
Sbjct:   50 RLGTRLNRPRSGGRGRHGXXXXXXXXXXSNAPNGGR---KERAVKSTPEGASWRDSDLDGKSRSFLFVKEIKAIPKWNGERVMNVLKEAQRLSEAAAAAAPGDGGGAADA-----------RRG-------LEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTA 204
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10741.1005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSE7_ECTSI7.970e-3855.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10741contigS-firma_F_contig10741:2736..4921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LSE7
PFAMsPPR,PPR_2,PPR_3
Max annot lvl2759|Eukaryota
Evalue1.31e-38
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
COG categoryS
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-21_003410.1
Exons3
Model size1482
Cds size1482
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10741.1005.1prot_S-firma_F_contig10741.1005.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10741 2736..4921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.0643845-CDS-S-firma_F_contig10741:2735..38601622815616.0643845-CDS-S-firma_F_contig10741:2735..3860Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10741 2736..3860 +
1696949456.0286148-CDS-S-firma_F_contig10741:2735..38601696949456.0286148-CDS-S-firma_F_contig10741:2735..3860Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10741 2736..3860 +
1622815616.0799508-CDS-S-firma_F_contig10741:4284..44851622815616.0799508-CDS-S-firma_F_contig10741:4284..4485Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10741 4285..4485 +
1696949456.0471835-CDS-S-firma_F_contig10741:4284..44851696949456.0471835-CDS-S-firma_F_contig10741:4284..4485Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10741 4285..4485 +
1622815616.0915463-CDS-S-firma_F_contig10741:4765..49211622815616.0915463-CDS-S-firma_F_contig10741:4765..4921Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10741 4766..4921 +
1696949456.0576203-CDS-S-firma_F_contig10741:4765..49211696949456.0576203-CDS-S-firma_F_contig10741:4765..4921Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10741 4766..4921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10741.1005.1

>prot_S-firma_F_contig10741.1005.1 ID=prot_S-firma_F_contig10741.1005.1|Name=mRNA_S-firma_F_contig10741.1005.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=494bp
AVQDLWRRKGTVKSVNILEGTNSRQHSLTSLERRNKRRAQSSRSDGVRLR
SRADVSSSSSSSSTATTTSYFQGGLTNVSRQQHRPQRRQRRRRVLLAFAP
PLAGSRDSPAASTARRPQAHAGGVVDTDFTSRSSNSNSSSSSSSRSHPHG
GARPPYSSNGGFRRPREAAALASRLEAHRSVSSSSSSSSTEARAASSWGG
RVGTRLNRPTGGRGGGSRSSPGGRGRVKKSGQAAEAAAADWRDDELDGKS
RSFLFVKEVKGIPKWNGAKVMKVLEEAHRLSGADDDSGGSADAGTGTGGG
GGNGRNGGRGGAKKLEMTSFMYNACISHMSMCGRWQEALQVLDLMRAVEF
PPDEFCVTAAITACGRAGQWQKSLDLLHALRADGGRTTVRLMNAVVDACR
KGHQWQKALEMLEDMRSQGITPDDFTYTAAIAACRQGGQCDKALELFREM
PSAGVEHTSIHYNVAIAICGEGGQSEKAFEVFREMQEAGNGTR*
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mRNA from alignment at S-firma_F_contig10741:2736..4921+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10741.1005.1 ID=mRNA_S-firma_F_contig10741.1005.1|Name=mRNA_S-firma_F_contig10741.1005.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2186bp|location=Sequence derived from alignment at S-firma_F_contig10741:2736..4921+ (Sphaerotrichia firma ET2_F female)
GCAGTGCAGGATCTGTGGCGGCGGAAAGGGACAGTGAAAAGCGTCAATAT
TTTGGAAGGAACCAACAGCCGACAGCACAGCTTGACTTCTCTTGAGCGGC
GCAACAAGAGGAGAGCACAGAGTAGTCGTAGCGATGGCGTTCGTCTCCGT
TCTCGGGCCGACGTCAGCAGCAGCAGTAGCAGCAGCAGCACAGCAACAAC
AACTTCATACTTCCAAGGCGGATTGACGAACGTTTCTCGTCAGCAGCACC
GTCCACAACGGCGGCAGCGGCGGCGGCGGGTACTGCTTGCTTTCGCCCCC
CCCCTCGCCGGGTCGCGCGATTCCCCGGCGGCGTCGACAGCACGGCGACC
GCAAGCACACGCGGGCGGCGTTGTCGACACCGATTTCACAAGCAGGAGCA
GCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGAAGCCACCCTCACGGT
GGCGCCCGGCCACCTTATTCGAGCAACGGCGGGTTCAGGAGGCCGAGGGA
GGCCGCGGCCCTGGCCTCGAGACTCGAGGCACATCGCAGCGTCAGCAGCA
GCAGCAGCAGCAGCAGCACGGAAGCAAGAGCCGCATCCAGCTGGGGCGGA
AGGGTGGGCACGAGGCTCAACAGGCCGACCGGGGGACGCGGGGGGGGGTC
CCGTAGTTCTCCCGGGGGGAGGGGAAGGGTGAAGAAGAGCGGCCAGGCGG
CGGAGGCGGCGGCGGCGGACTGGAGAGACGACGAGCTGGACGGCAAGAGC
CGGTCGTTTCTTTTCGTCAAGGAGGTCAAGGGAATCCCCAAGTGGAACGG
GGCCAAGGTGATGAAGGTGCTCGAGGAGGCACATCGGCTCAGCGGCGCCG
ACGACGACAGCGGCGGTAGCGCCGACGCCGGCACCGGTACTGGCGGCGGC
GGCGGCAATGGCCGCAACGGCGGGCGCGGGGGGGCGAAGAAGCTGGAGAT
GACCTCGTTCATGTACAACGCGTGCATCAGCCACATGTCCATGTGCGGGC
GGTGGCAGGAGGCGCTGCAGGTGCTGGACCTGATGAGGGCCGTGGAGTTC
CCCCCCGACGAGTTCTGCGTCACCGCCGCGATAACCGCGTGCGGGAGGGC
GGGGCAGTGGCAGAAGTCCTTGGATGTGAGTTTTTTTTGTTTGTGTTCTT
TGTTCTCCTTTTGGTGTTCGGTTGAGATGTAGACTGAGCATTGCGAATTG
TCTAGTCTATGCCTCGAGTGTTTTTATTCCCCCCCTCTTTTATGTTTTGC
AGGTGGTGTACGCACCTTTGCAGTGCGGGTTGTCTCCGTGCGTGCGCGGC
GACGGCGGCGGCGGCTTCGTGAATGCCGTTGCGCGGGGCCGGTGTTGTGT
GTGTGTTTGTTGTGCTACTTCTCTCTCACGACGCCTGTTTATAATTATGG
GACGCTTCAGGCTGAAACACACACAACACACAACCCTTCTACTCGAGGGC
CCACTTTCCTCCCGTGAAAAATCAACAAACGCTCGCCACCCCCTCCCTGC
GACCATCGCATCGCCACCAACCAACCAACCAACCAACCACCGCATGCAGC
TGCTGCACGCCCTGCGCGCCGACGGCGGCCGCACCACGGTGCGGCTCATG
AACGCGGTGGTGGACGCGTGCCGCAAGGGGCACCAGTGGCAGAAGGCCCT
CGAGATGCTGGAGGACATGCGCTCGCAGGGGATCACGCCGGACGACTTCA
CCTACACCGCCGCCATCGCGGCGTGCAGGCAGGGGGGTCAGTGTGACAAG
GTGAGGGAGGGCGGGCGGGGGGGGGGGGGGTTGGGGGGGGGAAAGTCAGC
CCTTGTTTGGAAGGGAAGGGGGGGGGGGAGGGCGGTGGGTGTATTTGTGT
GCGCGCTCGCGGGTCAGCGTTGCCGTCAGTCGTTGTGAGCGACGATGTCT
AGCGTGCACACAAAGCCGCACGGGACGAGTCACGCCTCTGTTGTACACCT
ACTGCTGTGCCTCGACTGAGAATGAGACGCGATGCATGATACGCTGTCTT
ATCTTGACTTGCCGCGAATCGATCAATTAGGCGCTGGAGCTTTTCCGAGA
GATGCCCTCCGCTGGCGTCGAGCACACCTCCATCCACTACAACGTGGCCA
TCGCCATCTGCGGGGAGGGAGGGCAGTCGGAGAAAGCCTTCGAGGTCTTT
CGAGAGATGCAGGAGGCTGGCAACGGAACCAGGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10741:2736..4921+

>mRNA_S-firma_F_contig10741.1005.1 ID=mRNA_S-firma_F_contig10741.1005.1|Name=mRNA_S-firma_F_contig10741.1005.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2964bp|location=Sequence derived from alignment at S-firma_F_contig10741:2736..4921+ (Sphaerotrichia firma ET2_F female)
GCAGTGCAGGATCTGTGGCGGCGGAAAGGGACAGTGAAAAGCGTCAATAT
TTTGGAAGGAACCAACAGCCGACAGCACAGCTTGACTTCTCTTGAGCGGC
GCAACAAGAGGAGAGCACAGAGTAGTCGTAGCGATGGCGTTCGTCTCCGT
TCTCGGGCCGACGTCAGCAGCAGCAGTAGCAGCAGCAGCACAGCAACAAC
AACTTCATACTTCCAAGGCGGATTGACGAACGTTTCTCGTCAGCAGCACC
GTCCACAACGGCGGCAGCGGCGGCGGCGGGTACTGCTTGCTTTCGCCCCC
CCCCTCGCCGGGTCGCGCGATTCCCCGGCGGCGTCGACAGCACGGCGACC
GCAAGCACACGCGGGCGGCGTTGTCGACACCGATTTCACAAGCAGGAGCA
GCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGAAGCCACCCTCACGGT
GGCGCCCGGCCACCTTATTCGAGCAACGGCGGGTTCAGGAGGCCGAGGGA
GGCCGCGGCCCTGGCCTCGAGACTCGAGGCACATCGCAGCGTCAGCAGCA
GCAGCAGCAGCAGCAGCACGGAAGCAAGAGCCGCATCCAGCTGGGGCGGA
AGGGTGGGCACGAGGCTCAACAGGCCGACCGGGGGACGCGGGGGGGGGTC
CCGTAGTTCTCCCGGGGGGAGGGGAAGGGTGAAGAAGAGCGGCCAGGCGG
CGGAGGCGGCGGCGGCGGACTGGAGAGACGACGAGCTGGACGGCAAGAGC
CGGTCGTTTCTTTTCGTCAAGGAGGTCAAGGGAATCCCCAAGTGGAACGG
GGCCAAGGTGATGAAGGTGCTCGAGGAGGCACATCGGCTCAGCGGCGCCG
ACGACGACAGCGGCGGTAGCGCCGACGCCGGCACCGGTACTGGCGGCGGC
GGCGGCAATGGCCGCAACGGCGGGCGCGGGGGGGCGAAGAAGCTGGAGAT
GACCTCGTTCATGTACAACGCGTGCATCAGCCACATGTCCATGTGCGGGC
GGTGGCAGGAGGCGCTGCAGGTGCTGGACCTGATGAGGGCCGTGGAGTTC
CCCCCCGACGAGTTCTGCGTCACCGCCGCGATAACCGCGTGCGGGAGGGC
GGGGCAGTGGCAGAAGTCCTTGGATGCAGTGCAGGATCTGTGGCGGCGGA
AAGGGACAGTGAAAAGCGTCAATATTTTGGAAGGAACCAACAGCCGACAG
CACAGCTTGACTTCTCTTGAGCGGCGCAACAAGAGGAGAGCACAGAGTAG
TCGTAGCGATGGCGTTCGTCTCCGTTCTCGGGCCGACGTCAGCAGCAGCA
GTAGCAGCAGCAGCACAGCAACAACAACTTCATACTTCCAAGGCGGATTG
ACGAACGTTTCTCGTCAGCAGCACCGTCCACAACGGCGGCAGCGGCGGCG
GCGGGTACTGCTTGCTTTCGCCCCCCCCCTCGCCGGGTCGCGCGATTCCC
CGGCGGCGTCGACAGCACGGCGACCGCAAGCACACGCGGGCGGCGTTGTC
GACACCGATTTCACAAGCAGGAGCAGCAACAGCAACAGCAGCAGCAGCAG
CAGCAGCAGAAGCCACCCTCACGGTGGCGCCCGGCCACCTTATTCGAGCA
ACGGCGGGTTCAGGAGGCCGAGGGAGGCCGCGGCCCTGGCCTCGAGACTC
GAGGCACATCGCAGCGTCAGCAGCAGCAGCAGCAGCAGCAGCACGGAAGC
AAGAGCCGCATCCAGCTGGGGCGGAAGGGTGGGCACGAGGCTCAACAGGC
CGACCGGGGGACGCGGGGGGGGGTCCCGTAGTTCTCCCGGGGGGAGGGGA
AGGGTGAAGAAGAGCGGCCAGGCGGCGGAGGCGGCGGCGGCGGACTGGAG
AGACGACGAGCTGGACGGCAAGAGCCGGTCGTTTCTTTTCGTCAAGGAGG
TCAAGGGAATCCCCAAGTGGAACGGGGCCAAGGTGATGAAGGTGCTCGAG
GAGGCACATCGGCTCAGCGGCGCCGACGACGACAGCGGCGGTAGCGCCGA
CGCCGGCACCGGTACTGGCGGCGGCGGCGGCAATGGCCGCAACGGCGGGC
GCGGGGGGGCGAAGAAGCTGGAGATGACCTCGTTCATGTACAACGCGTGC
ATCAGCCACATGTCCATGTGCGGGCGGTGGCAGGAGGCGCTGCAGGTGCT
GGACCTGATGAGGGCCGTGGAGTTCCCCCCCGACGAGTTCTGCGTCACCG
CCGCGATAACCGCGTGCGGGAGGGCGGGGCAGTGGCAGAAGTCCTTGGAT
CTGCTGCACGCCCTGCGCGCCGACGGCGGCCGCACCACGGTGCGGCTCAT
GAACGCGGTGGTGGACGCGTGCCGCAAGGGGCACCAGTGGCAGAAGGCCC
TCGAGATGCTGGAGGACATGCGCTCGCAGGGGATCACGCCGGACGACTTC
ACCTACACCGCCGCCATCGCGGCGTGCAGGCAGGGGGGTCAGTGTGACAA
GCTGCTGCACGCCCTGCGCGCCGACGGCGGCCGCACCACGGTGCGGCTCA
TGAACGCGGTGGTGGACGCGTGCCGCAAGGGGCACCAGTGGCAGAAGGCC
CTCGAGATGCTGGAGGACATGCGCTCGCAGGGGATCACGCCGGACGACTT
CACCTACACCGCCGCCATCGCGGCGTGCAGGCAGGGGGGTCAGTGTGACA
AGGCGCTGGAGCTTTTCCGAGAGATGCCCTCCGCTGGCGTCGAGCACACC
TCCATCCACTACAACGTGGCCATCGCCATCTGCGGGGAGGGAGGGCAGTC
GGAGAAAGCCTTCGAGGTCTTTCGAGAGATGCAGGAGGCTGGCAACGGAA
CCAGGTAGGCGCTGGAGCTTTTCCGAGAGATGCCCTCCGCTGGCGTCGAG
CACACCTCCATCCACTACAACGTGGCCATCGCCATCTGCGGGGAGGGAGG
GCAGTCGGAGAAAGCCTTCGAGGTCTTTCGAGAGATGCAGGAGGCTGGCA
ACGGAACCAGGTAG
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