mRNA_S-firma_F_contig1074.1003.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1074.1003.1
Unique NamemRNA_S-firma_F_contig1074.1003.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1074.1003.1 vs. uniprot
Match: D8LLG2_ECTSI (WW domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LLG2_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 4.350e-49
Identity = 92/166 (55.42%), Postives = 115/166 (69.28%), Query Frame = 1 
Query:    1 MSFFTSGFAGLLNNKRKKKGEALEVKCPLVSVHAASASKDXXXXXXSDKKDEGKWEMLTDAYGRTYWQHNVTGEWSFAYGGGLVSP-VGTVNPSPIVG-YQAAFTPSPVFA--PAPPXXAKKKDIEK------KGKGWWETMYDDDGDRYWEHTVSKKTTYKDPYF 468
            MSFFTSGFA ++NN+R K  +    K    +V + S  ++       ++KDEGKW+MLTD YGR YWQH+VTGEW++ YGGGL +P V  V P+P+V  +   FTP PV+A  P PP   KKKD +K      KGKGWWET YD+DGDRYWEHTV+KKTTYKDPY+
Sbjct:    1 MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVES-SDKEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHGVVFTPPPVYAAAPNPPLPTKKKDGDKQDEKKEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 165
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BLAST of mRNA_S-firma_F_contig1074.1003.1 vs. uniprot
Match: D8LLF4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF4_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 2.520e-47
Identity = 96/166 (57.83%), Postives = 107/166 (64.46%), Query Frame = 1 
Query:    1 MSFFTSGFAGLLNN-KRKKKGEALEVKCPLVSVHAASASKDXXXXXXSDKKDEGKWEMLTDAYGRTYWQHNVTGEWSFAYGGGLVSPVGTVNPSPIVGYQAA--FTPSPV-------FAPAPPXXAKKKDIEKKGKGWWETMYDDDGDRYWEHTVSKKTTYKDPYF 468
            MSFFT G AG+ NN K +KK E              S  K        DKKDEG WE LTD YGRTYWQH+ TGEW F YGGG V PVGTVNPSP+ GY     FTPSPV        A A P   KKK+ ++KGKGWWET YD++GDRYWEHTV+KKTTYKDPY+
Sbjct:    1 MSFFTKGLAGIFNNGKARKKDEG-----------KGSDKK-------KDKKDEGSWEKLTDVYGRTYWQHSKTGEWHFGYGGGFVPPVGTVNPSPM-GYPGGPVFTPSPVPGGTLFPVAVAGPP-GKKKEKKEKGKGWWETKYDEEGDRYWEHTVTKKTTYKDPYY 146
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BLAST of mRNA_S-firma_F_contig1074.1003.1 vs. uniprot
Match: D8LLF3_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF3_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 2.730e-47
Identity = 94/171 (54.97%), Postives = 111/171 (64.91%), Query Frame = 1 
Query:    1 MSFFTSGFAGLLNNKRKKKGEALEVKCPLVSVHAASASKDXXXXXXSDKKDEGKWEMLTDAYGRTYWQHNVTGEWSFAYGGGLVSPVGTVNPSPIVGYQAA--FTPSPV-------FAPAPPXXAKKKDIEKK------GKGWWETMYDDDGDRYWEHTVSKKTTYKDPYF 468
            MSFF++GFA L NN+R+K+ +               A K        +KKDEG+W+MLTDAYGRTYWQH++TGEW++  GGGLVSPVGTVNPSP+ GY     FTPSPV       FA AP    KK            GKGWWET YD+DGDRYWEHTV+KKTTYKDPY+
Sbjct:    1 MSFFSNGFAVLANNRRRKEAK---------KAAKNGADKSAQSSDKMEKKDEGRWDMLTDAYGRTYWQHSITGEWTYGCGGGLVSPVGTVNPSPM-GYPGGPVFTPSPVPGGALYPFAVAP--HPKKXXXXXXXXXXXXGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 159
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BLAST of mRNA_S-firma_F_contig1074.1003.1 vs. uniprot
Match: D8LLG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG0_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 6.790e-41
Identity = 83/166 (50.00%), Postives = 106/166 (63.86%), Query Frame = 1 
Query:    1 MSFFTSGFAGLLNNKRKKKGEALEVKCPLVSVHAASASKDXXXXXXSDKKDEGKWEMLTDAYGRTYWQHNVTGEWSFAYGGGLVSP-VGTVNPSPIV-GYQAAFTPSPVFAPAPPXXAKKKDIE--------KKGKGWWETMYDDDGDRYWEHTVSKKTTYKDPYF 468
            MSFFTSGFA ++NN+R K  +    K    +V + S +++       ++KDEGKW+MLTD YGR YWQHNVTGEW++ YGGGL +P V  V+P+P+   +   FTP         X    K           +KGKGWWET YD+DGDRYWEHTV+KKTTYKDPY+
Sbjct:    1 MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVES-SDNEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHNVTGEWAYVYGGGLSAPPVVAVSPTPMACPHGVVFTPPXXXXXXXXXPLPTKXXXXXXXXXXXEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 165
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BLAST of mRNA_S-firma_F_contig1074.1003.1 vs. uniprot
Match: A0A6H5KRF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF5_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.290e-22
Identity = 55/106 (51.89%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:  202 QHNVTGEWSFAYGGGLVSP-VGTVNPSPIV-GYQAAFTPSPVFA--PAPPXXAKKKDI-------------EKKGKGWWETMYDDDGDRYWEHTVSKKTTYKDPYF 468
            QH+VTGEW++ YGGGL +P V  V+P+ +V  +     P  V+A  P PP  AKKKD+             ++KGKGWWET  D DGDRYWEHTV+KK TYKDPY+
Sbjct:   17 QHSVTGEWAYVYGGGLSAPPVVAVSPTSVVYPHGVVVMPXXVYAAAPNPPLPAKKKDVAGGQKDCDEKDEKKEKGKGWWETKSDKDGDRYWEHTVTKKITYKDPYY 122
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1074.1003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LLG2_ECTSI4.350e-4955.42WW domain-containing protein n=4 Tax=Ectocarpus Ta... [more]
D8LLF4_ECTSI2.520e-4757.83WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
D8LLF3_ECTSI2.730e-4754.97WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
D8LLG0_ECTSI6.790e-4150.00WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KRF5_9PHAE2.290e-2251.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1074contigS-firma_F_contig1074:21928..24834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1777
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1074.1003.1prot_S-firma_F_contig1074.1003.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1074 23234..24834 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.7737665-UTR-S-firma_F_contig1074:21927..232331622815615.7737665-UTR-S-firma_F_contig1074:21927..23233Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1074 21928..23233 -
1696949455.7613926-UTR-S-firma_F_contig1074:21927..232331696949455.7613926-UTR-S-firma_F_contig1074:21927..23233Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1074 21928..23233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.7841027-CDS-S-firma_F_contig1074:23233..235041622815615.7841027-CDS-S-firma_F_contig1074:23233..23504Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 23234..23504 -
1696949455.77108-CDS-S-firma_F_contig1074:23233..235041696949455.77108-CDS-S-firma_F_contig1074:23233..23504Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 23234..23504 -
1622815615.7963989-CDS-S-firma_F_contig1074:24426..245511622815615.7963989-CDS-S-firma_F_contig1074:24426..24551Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 24427..24551 -
1696949455.7886665-CDS-S-firma_F_contig1074:24426..245511696949455.7886665-CDS-S-firma_F_contig1074:24426..24551Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 24427..24551 -
1622815615.8102164-CDS-S-firma_F_contig1074:24759..248341622815615.8102164-CDS-S-firma_F_contig1074:24759..24834Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 24760..24834 -
1696949455.802876-CDS-S-firma_F_contig1074:24759..248341696949455.802876-CDS-S-firma_F_contig1074:24759..24834Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 24760..24834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1074.1003.1

>prot_S-firma_F_contig1074.1003.1 ID=prot_S-firma_F_contig1074.1003.1|Name=mRNA_S-firma_F_contig1074.1003.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=157bp
MSFFTSGFAGLLNNKRKKKGEALEVKCPLVSVHAASASKDDDKKKSSDKK
DEGKWEMLTDAYGRTYWQHNVTGEWSFAYGGGLVSPVGTVNPSPIVGYQA
AFTPSPVFAPAPPPPAKKKDIEKKGKGWWETMYDDDGDRYWEHTVSKKTT
YKDPYF*
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mRNA from alignment at S-firma_F_contig1074:21928..24834-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1074.1003.1 ID=mRNA_S-firma_F_contig1074.1003.1|Name=mRNA_S-firma_F_contig1074.1003.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2907bp|location=Sequence derived from alignment at S-firma_F_contig1074:21928..24834- (Sphaerotrichia firma ET2_F female)
ATGTCGTTCTTCACGTCCGGCTTCGCGGGGTTGTTGAACAACAAGCGCAA
GAAGAAAGGTGAGGCCCTTGAAGTTGTCTTCTATTCTCCTTCCGTTTGGC
TTTGAACGGCGAAAGCTTGCATCCCGGACAGATATAGATGCCGATTGTGC
ACATACATGCTGCACCGCGCTTTCGCGGGTGCTGACTGACTCTGCTGTCA
GATTCCCAAGCACAGAGATTTAGTTTGTCGGTGCAGCAAAAAAGCAGAGT
GTCGATCAATAGTCAGGAAGAGTTTGTTGACAGAAGTGCCCCCTTGTGTC
TGTCCACGCAGCCTCCGCTTCCAAAGACGACGACAAGAAGAAGAGCTCTG
ACAAGAAAGATGAGGGGAAGTGGGAGATGCTCACGGACGCTTACGGTCGG
ACATACTGGTGAGCGAGGAGATGAGAGCCAGAAATATGATCTACTTGAGT
CGGAATTTATGTTGCCACCTTTTTCTCTCGATAAGAACAGGCCTACCGAG
CGTAGACGAGTCCGTAGAGTTTCCTTTGATCAAAAGGTTGCTCTGTAGGT
TGTGCGCCGTCCAGCGTGGTTTTTAGGACCTCATGCGCATGCATGCAGCA
TGCATTCATACAGGACGACGATGACTCGATCTCCCCGCAAGCGATCCACT
CGTCGTGTACGTAATGATATACTCCGAGTCACCGTTGCTCTGCACACAAC
ATCATGTACCTTTTCTCTGAACTCGATCCGACGACGTTGCAATGAGTTTT
TTTATTTTGGATATATTGTTCTGTGACACGAAAACCACCATCGGCGCCTC
GATACGACGCAAGTTCTGACACCCCCTGCTGCCGTACAGAGCTTGAGCAT
AGATAGCCTCGGAGGGGGTAGAGGTATAAAAAAGGCAGGCGGACGTGATA
GAGACGAGAGATAGATGTGTGCGGTAAATTTGCTGGGACATGCACCATCA
CTCGAACCACCGTTTAAAAATAATGCGTATAATCGGGGGCCACAACGAGC
TAGACACTTTAGATCATTTACATGCTCGGCCGCGCCGGCAACACTGTCGG
CTGTCGGCGCGGCTGGGCATCTGTGAGACCTCCAGCCCGCAGGCGCTGGA
GGCCTCAACCCAATCCAATACTTACATTAAGTGATCTAGAGCTCGCACAA
GAATACAACCGAAAACTCGCCCAGCACACCTGACGTGGCTGGATTGGTGT
GCTCTACTTTCTTAGCAGACTACAGACAGTGGATAGACCAAAAGATTCAA
GGAGCTGCTTTCCACAACCACCCGTGAACACCCGCCCGCCCCCCTGCGCA
CCCTCGTTCCACATCCAACCGTCCAAACAGGCAGCACAACGTGACCGGCG
AGTGGAGCTTCGCTTACGGCGGCGGTCTCGTCTCCCCCGTCGGCACCGTC
AACCCTTCACCCATCGTTGGCTACCAGGCAGCGTTCACCCCTTCGCCGGT
CTTCGCACCCGCCCCGCCGCCCCCCGCCAAGAAGAAGGACATCGAGAAGA
AGGGGAAGGGCTGGTGGGAAACGATGTACGACGACGACGGCGACCGCTAT
TGGGAACACACGGTCTCCAAGAAGACCACCTACAAGGACCCGTACTTCTG
AACCGAGCTTCGGTAGCAACGACGACGACATGAAGTGGGTTACCATTGGG
GAAGGAAGCAAAACCCCTGGGTATGTATATATTCCGCACATTCATGTCGC
GTTTGTATGTACTGCTGTATGTTCGTATGCATGCCGCGTAGGGGTACGCA
ACGGTTTCATCGGTATGCTTGTATCATATGTGGCGTCTAGGATGTCGAGG
GGAGCGTTCCGGTCCGTGCCTTGTGTAGGGGATGAGGAGGCATGAAAGCT
TGTTGGGGCGTTCCGGTCCTGGTTGACTTACATACCAGTAGGATAGCGCG
AGTTTCATACAACTCCTCGAGGCCTCAAGGTCAAAGGCGAGAGACGGCCC
TCCCTTCGTTTTTTCCCTCCTTGGATTATTATGCATGTTATATTGTAGTG
TGCGGTGGGGAAAACACGTTCCCAAGAGCACACTTGATGCTTTGTAGCGC
TCGGATGTACGCGTGCATGGGTTGATGCGTTGGAAATATGAGAAGAGTTG
TATTTCCCTCCGATGTATTCTGGTCTGGCCGACTTGCGCGCCGGACTGTA
TTCTGGTCGAACGACCTATATGAACGAGGGCATGTGAAGTGTCACGGGTG
TGGGTGAACTCTCTGGTCACTTTTGACCGCTAATGGGGTTGGATCCCAAT
GGGTGGTTAAATTTACCACAAAACAATGTCGGTTTGATGAAAAGTACACG
GCGGTTTTGTATCCTCGCGCGTTTGCCGACGACGGCAACGAACGGTTGCA
ATAGCGATGGTTTCCATTTTGTGCATGATACTTTGTGTATAATGCTGGTT
TTCGTGGGTGTGATATCTGCCCGGTCTGCATACACATGCCTCCCTTGCGG
AGGGGTGGTTTTGGAATTTTGTATCTTGAGTGAAGTTTATTTGTTTGGGT
TTCCTTTAGAAACGTTATCGTTGTGCAGTCGGGGCCGACTTGTCGTCTCT
TTTTGCCAGGGCTGGGCTGTCGCTGGGCAACGCCCTGGTTGGTATTCGTT
TGGTATTCTCGTGCGTGTTCGGAGGAAATTTTGTGTTTGGTATGTCAAGG
AAGCTATGTTGTATGATCGTTTCTCTTTGTGCATTGTGGCGGCTGTTGGG
GCACCAGATAACTTTTGAGAGGGGTAGGGTGGACCGTTATGCTGGGGTCT
GCTGTTGAATTTCGTTACCGTGGGAAGGAAGGGGCATTGAACAACGTCAG
AGGACGTCTTGGAACCGAATGTACAAAAATATGTACAAAACAAAAAACAA
AATCACGGCGGCAATGCCCTTCTCTTTCTCTCAGAGCGGGCCTACTTCTC
TTGCGAT
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Coding sequence (CDS) from alignment at S-firma_F_contig1074:21928..24834-

>mRNA_S-firma_F_contig1074.1003.1 ID=mRNA_S-firma_F_contig1074.1003.1|Name=mRNA_S-firma_F_contig1074.1003.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=942bp|location=Sequence derived from alignment at S-firma_F_contig1074:21928..24834- (Sphaerotrichia firma ET2_F female)
ATGTCGTTCTTCACGTCCGGCTTCGCGGGGTTGTTGAACAACAAGCGCAA
GAAGAAAGGTGAGGCCCTTGAAGTTATGTCGTTCTTCACGTCCGGCTTCG
CGGGGTTGTTGAACAACAAGCGCAAGAAGAAAGGTGAGGCCCTTGAAGTT
AAGTGCCCCCTTGTGTCTGTCCACGCAGCCTCCGCTTCCAAAGACGACGA
CAAGAAGAAGAGCTCTGACAAGAAAGATGAGGGGAAGTGGGAGATGCTCA
CGGACGCTTACGGTCGGACATACTGAAGTGCCCCCTTGTGTCTGTCCACG
CAGCCTCCGCTTCCAAAGACGACGACAAGAAGAAGAGCTCTGACAAGAAA
GATGAGGGGAAGTGGGAGATGCTCACGGACGCTTACGGTCGGACATACTG
GCAGCACAACGTGACCGGCGAGTGGAGCTTCGCTTACGGCGGCGGTCTCG
TCTCCCCCGTCGGCACCGTCAACCCTTCACCCATCGTTGGCTACCAGGCA
GCGTTCACCCCTTCGCCGGTCTTCGCACCCGCCCCGCCGCCCCCCGCCAA
GAAGAAGGACATCGAGAAGAAGGGGAAGGGCTGGTGGGAAACGATGTACG
ACGACGACGGCGACCGCTATTGGGAACACACGGTCTCCAAGAAGACCACC
TACAAGGACCCGTACTTCTGAGCAGCACAACGTGACCGGCGAGTGGAGCT
TCGCTTACGGCGGCGGTCTCGTCTCCCCCGTCGGCACCGTCAACCCTTCA
CCCATCGTTGGCTACCAGGCAGCGTTCACCCCTTCGCCGGTCTTCGCACC
CGCCCCGCCGCCCCCCGCCAAGAAGAAGGACATCGAGAAGAAGGGGAAGG
GCTGGTGGGAAACGATGTACGACGACGACGGCGACCGCTATTGGGAACAC
ACGGTCTCCAAGAAGACCACCTACAAGGACCCGTACTTCTGA
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