mRNA_S-firma_F_contig10725.981.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10725.981.1
Unique NamemRNA_S-firma_F_contig10725.981.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10725.981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10725contigS-firma_F_contig10725:1440..2206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size302
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.5568526-CDS-S-firma_F_contig10725:1441..15711622815613.5568526-CDS-S-firma_F_contig10725:1441..1571Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10725 1442..1571 -
1696949454.3689926-CDS-S-firma_F_contig10725:1441..15711696949454.3689926-CDS-S-firma_F_contig10725:1441..1571Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10725 1442..1571 -
1622815613.571177-CDS-S-firma_F_contig10725:2036..22061622815613.571177-CDS-S-firma_F_contig10725:2036..2206Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10725 2037..2206 -
1696949454.3800094-CDS-S-firma_F_contig10725:2036..22061696949454.3800094-CDS-S-firma_F_contig10725:2036..2206Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10725 2037..2206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10725.981.1prot_S-firma_F_contig10725.981.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10725 1442..2206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10725.981.1

>prot_S-firma_F_contig10725.981.1 ID=prot_S-firma_F_contig10725.981.1|Name=mRNA_S-firma_F_contig10725.981.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=100bp
SRGGGRSQGGNLRRAGERGGGGRSQGGGPQQIPGGRGRPGRGRARRGGGG
GACGRCRSQHRRRKEDVCDHALFGRRRLRLRGGLCRGEARRICPGGGGGR
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mRNA from alignment at S-firma_F_contig10725:1440..2206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10725.981.1 ID=mRNA_S-firma_F_contig10725.981.1|Name=mRNA_S-firma_F_contig10725.981.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=767bp|location=Sequence derived from alignment at S-firma_F_contig10725:1440..2206- (Sphaerotrichia firma ET2_F female)
AGCAGAGGCGGTGGAAGAAGTCAAGGCGGTAATCTCCGACGCGCCGGCGA
GCGCGGAGGTGGTGGAAGAAGTCAAGGCGGAGGTCCCCAGCAAATCCCCG
GAGGAAGAGGACGACCAGGTCGAGGGCGGGCACGACGAGGAGGAGGAGGA
GGAGCCTGTGGAAGGTGCCGGTAAGGACCGCCGTCTTGTTGTCGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCGACAACCCTCAGTAGAT
GCCGCGCGCGCACGCACGCCCCAAGTCATGCCATTACACACCCCGCGTTT
CAGCGAACTGTTGCTGTACGTACGCGTCAGTCTCGGAGGAAAACGTGAGG
TTCTATTCCCCTGCTTGCGGTTGTCGGTGTTTCAACTCTACAGTACGCCA
CACGGTTGTTGACGCTACAACCCCAACACTAGCCTGACTTTCGTGCTGCT
GTGTGTCCCGATTGTAGGCACCTCCGGCAACCGTGCAAACTCACTCCCTC
TTTTTCTTGTGTGTTTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTGA
ACCACCGTGTCCTGTTCTTTGTCGCCGGGGGGGGGGGGGGGGTGGGCGCT
GTTGGGCAAACAACTGAATGCATACCTCAAAAAAGCTCGCAACACAGGCG
CCGCAAGGAAGACGTTTGCGACCATGCTCTCTTCGGGCGCCGACGACTCC
GCCTGCGAGGAGGGCTTTGCCGAGGAGAAGCCAGACGTATATGCCCGGGA
GGGGGAGGAGGAAGAGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10725:1440..2206-

>mRNA_S-firma_F_contig10725.981.1 ID=mRNA_S-firma_F_contig10725.981.1|Name=mRNA_S-firma_F_contig10725.981.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=600bp|location=Sequence derived from alignment at S-firma_F_contig10725:1440..2206- (Sphaerotrichia firma ET2_F female)
AGCAGAGGCGGTGGAAGAAGTCAAGGCGGTAATCTCCGACGCGCCGGCGA
GCGCGGAGGTGGTGGAAGAAGTCAAGGCGGAGGTCCCCAGCAAATCCCCG
GAGGAAGAGGACGACCAGGTCGAGGGCGGGCACGACGAGGAGGAGGAGGA
GGAGCCTGTGGAAGGTGCCGAGCAGAGGCGGTGGAAGAAGTCAAGGCGGT
AATCTCCGACGCGCCGGCGAGCGCGGAGGTGGTGGAAGAAGTCAAGGCGG
AGGTCCCCAGCAAATCCCCGGAGGAAGAGGACGACCAGGTCGAGGGCGGG
CACGACGAGGAGGAGGAGGAGGAGCCTGTGGAAGGTGCCGCTCGCAACAC
AGGCGCCGCAAGGAAGACGTTTGCGACCATGCTCTCTTCGGGCGCCGACG
ACTCCGCCTGCGAGGAGGGCTTTGCCGAGGAGAAGCCAGACGTATATGCC
CGGGAGGGGGAGGAGGAAGACTCGCAACACAGGCGCCGCAAGGAAGACGT
TTGCGACCATGCTCTCTTCGGGCGCCGACGACTCCGCCTGCGAGGAGGGC
TTTGCCGAGGAGAAGCCAGACGTATATGCCCGGGAGGGGGAGGAGGAAGA
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