mRNA_S-firma_F_contig10721.978.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10721.978.1
Unique NamemRNA_S-firma_F_contig10721.978.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10721.978.1 vs. uniprot
Match: A0A7S1GE63_9STRA (Trafficking protein particle complex subunit n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GE63_9STRA)

HSP 1 Score: 173 bits (438), Expect = 3.080e-52
Identity = 84/127 (66.14%), Postives = 107/127 (84.25%), Query Frame = 1
Query:    1 MSLFTLYIVNRAGGLVYNRDLAPGVPRLAANDYLRNASMFHSLYAIASQLAPVPSVGIETLEADSFTLECFQSPTGIKFFVTARLGSSGLQEFLRTVYQLFADYVLKNPFYETDMPIRVEKFDAAVD 381
            M+L+TLYIVN+AGGL+YN+DL+  VP+L  N+YL  AS FH L+AI+SQLAPV + GIE LEAD+FTL C+Q+PTGIKFFVTAR G++GL+  L+TVY L+AD+VLKNPFYE DMPIR + FD A++
Sbjct:   72 MALYTLYIVNKAGGLIYNKDLST-VPKLTGNEYLTLASTFHGLHAISSQLAPVVAGGIELLEADTFTLRCYQTPTGIKFFVTARPGTAGLEVVLKTVYGLYADFVLKNPFYELDMPIRCDLFDRALE 197          
BLAST of mRNA_S-firma_F_contig10721.978.1 vs. uniprot
Match: A0A2D4CAE8_PYTIN (Trafficking protein particle complex subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CAE8_PYTIN)

HSP 1 Score: 157 bits (396), Expect = 1.120e-46
Identity = 73/124 (58.87%), Postives = 96/124 (77.42%), Query Frame = 1
Query:    7 LFTLYIVNRAGGLVYNRDLAPGVPRLAANDYLRNASMFHSLYAIASQLAPVPSVGIETLEADSFTLECFQSPTGIKFFVTARLGSSGLQEFLRTVYQLFADYVLKNPFYETDMPIRVEKFDAAV 378
            L +LYI+N++GGL+Y  DL+   PRL++ND+LR  S FHS++AIA   APV S GIE+LE D+F L+CFQ+PTGIKFF+TA LG+  L   LRT+Y+L+ DYVLKNPFYE +MPIR   F+A +
Sbjct:    2 LHSLYIINKSGGLIYQLDLSSAAPRLSSNDHLRLGSTFHSMHAIAVLAAPVASGGIESLETDTFRLQCFQTPTGIKFFITAALGTPDLDHALRTIYELYVDYVLKNPFYELEMPIRCSLFNAGL 125          
BLAST of mRNA_S-firma_F_contig10721.978.1 vs. uniprot
Match: K3WRL1_GLOUD (Trafficking protein particle complex subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRL1_GLOUD)

HSP 1 Score: 155 bits (392), Expect = 4.540e-46
Identity = 72/124 (58.06%), Postives = 97/124 (78.23%), Query Frame = 1
Query:    7 LFTLYIVNRAGGLVYNRDLAPGVPRLAANDYLRNASMFHSLYAIASQLAPVPSVGIETLEADSFTLECFQSPTGIKFFVTARLGSSGLQEFLRTVYQLFADYVLKNPFYETDMPIRVEKFDAAV 378
            L +LYI+N++GGLVY +DL+   P+L++ND+LR  S FHS++AIA   +PV S GIETLE D+F L+CFQ+PTG+KFF+TA LG+  L   LRTVY+L+ DYVLKNPFYE +MPIR   F++ +
Sbjct:    2 LHSLYIINKSGGLVYQQDLSSAAPKLSSNDHLRLGSTFHSMHAIAVLASPVASGGIETLETDTFRLQCFQTPTGLKFFLTAALGTPDLDAVLRTVYELYVDYVLKNPFYELEMPIRCSLFNSGL 125          
BLAST of mRNA_S-firma_F_contig10721.978.1 vs. uniprot
Match: F0WDB3_9STRA (Trafficking protein particle complex subunit n=3 Tax=Albugo TaxID=65356 RepID=F0WDB3_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.480e-45
Identity = 69/124 (55.65%), Postives = 97/124 (78.23%), Query Frame = 1
Query:    7 LFTLYIVNRAGGLVYNRDLAPGVPRLAANDYLRNASMFHSLYAIASQLAPVPSVGIETLEADSFTLECFQSPTGIKFFVTARLGSSGLQEFLRTVYQLFADYVLKNPFYETDMPIRVEKFDAAV 378
            L  LYI+N++GGL+Y +DL+P  P+L++ND+LR  S FHS++AIA+  APV S GI +LE D+F L+CFQ+ TGIKFF+TA+LG+  +   L+T+Y+L+ DYVLKNPFYE +MPIR   F+A +
Sbjct:    2 LHALYIINKSGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPVASGGINSLETDTFRLQCFQTLTGIKFFITAQLGTLDIDNALKTIYELYVDYVLKNPFYELEMPIRCTLFNAGL 125          
BLAST of mRNA_S-firma_F_contig10721.978.1 vs. uniprot
Match: A0A7S2RJT7_9STRA (Trafficking protein particle complex subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJT7_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.770e-45
Identity = 74/127 (58.27%), Postives = 93/127 (73.23%), Query Frame = 1
Query:   16 LYIVNRAGGLVYNRDLAPGVPRLAANDYLRNASMFHSLYAIASQLAPVPSVGIETLEADSFTLECFQSPTGIKFFVTARLGSSGLQEFLRTVYQLFADYVLKNPFYETDMPIRVEKFDAAVDRLAAS 396
            L+I++R+GGL++N+DL+   PRL AND+LR  S FH  +AIASQ+APV S GIE LE DSF L CFQ PTGIKF +TA  G+  L+  L+ VYQ + DYVLKNPFYE +MPIR E F  A+ R+  S
Sbjct:    5 LFIISRSGGLIFNQDLSELAPRLNANDWLRLGSTFHGFHAIASQIAPVVSSGIEKLETDSFVLRCFQPPTGIKFVITAEAGTQDLEVVLQRVYQAYTDYVLKNPFYELEMPIRCELFTEAIARVIQS 131          
BLAST of mRNA_S-firma_F_contig10721.978.1 vs. uniprot
Match: H3GHR7_PHYRM (Trafficking protein particle complex subunit n=18 Tax=Peronosporaceae TaxID=4777 RepID=H3GHR7_PHYRM)

HSP 1 Score: 152 bits (383), Expect = 1.200e-44
Identity = 69/121 (57.02%), Postives = 95/121 (78.51%), Query Frame = 1
Query:    7 LFTLYIVNRAGGLVYNRDLAPGVPRLAANDYLRNASMFHSLYAIASQLAPVPSVGIETLEADSFTLECFQSPTGIKFFVTARLGSSGLQEFLRTVYQLFADYVLKNPFYETDMPIRVEKFD 369
            L +LYI+N+AGGL+Y +DL+P  P+L++ND+LR  S FHS++AIA+  AP  S GI++LE  +F L+C Q+PTG+KFF+TA LGS+ L   L+TVY+L+ DYVLKNPFYE +MPIR   F+
Sbjct:    2 LHSLYIINKAGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPTSSGGIDSLETGTFRLQCLQTPTGLKFFITAALGSTDLDVALQTVYELYVDYVLKNPFYELEMPIRCSLFN 122          
BLAST of mRNA_S-firma_F_contig10721.978.1 vs. uniprot
Match: M4BAF1_HYAAE (Trafficking protein particle complex subunit n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAF1_HYAAE)

HSP 1 Score: 147 bits (370), Expect = 1.200e-42
Identity = 67/121 (55.37%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    7 LFTLYIVNRAGGLVYNRDLAPGVPRLAANDYLRNASMFHSLYAIASQLAPVPSVGIETLEADSFTLECFQSPTGIKFFVTARLGSSGLQEFLRTVYQLFADYVLKNPFYETDMPIRVEKFD 369
            L +LYI+N+AGGL+Y +DL+P  P+L++ND+LR  S FHS++AIA+  AP  S GI++LE  +F L+C Q+PTG KFF+TA LG+  +   L+TVY+L+ DYVLKNPFYE +MPIR   F+
Sbjct:    2 LHSLYIINKAGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPTNSGGIDSLETGTFRLQCLQTPTGTKFFLTAALGTPSVDVTLQTVYELYVDYVLKNPFYELEMPIRCSLFN 122          
BLAST of mRNA_S-firma_F_contig10721.978.1 vs. uniprot
Match: D7FQ99_ECTSI (Trafficking protein particle complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ99_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 3.420e-42
Identity = 68/124 (54.84%), Postives = 94/124 (75.81%), Query Frame = 1
Query:   16 LYIVNRAGGLVYNRDLAPGVPRLAANDYLRNASMFHSLYAIASQLAPVPSVGIETLEADSFTLECFQSPTGIKFFVTARLGSSGLQEFLRTVYQLFADYVLKNPFYETDMPIRVEKFDAAVDRL 387
            L++VN++GGL+YN++L+   PRL +ND+LR  S FHSL+AIA+Q+APVPS GIE LE D+F L+ FQ+ TG+KF +TA  G+  L   L+ +Y+L+ DYVLKNPFYE +MPIR E F   ++ L
Sbjct:    5 LFVVNKSGGLIYNQNLSSAAPRLNSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGGVLQEIYELYTDYVLKNPFYELEMPIRCELFTLYLEEL 128          
BLAST of mRNA_S-firma_F_contig10721.978.1 vs. uniprot
Match: K8Z5G7_NANGC (Trafficking protein particle complex subunit (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z5G7_NANGC)

HSP 1 Score: 144 bits (363), Expect = 1.120e-41
Identity = 66/124 (53.23%), Postives = 91/124 (73.39%), Query Frame = 1
Query:   16 LYIVNRAGGLVYNRDLAPGVPRLAANDYLRNASMFHSLYAIASQLAPVPSVGIETLEADSFTLECFQSPTGIKFFVTARLGSSGLQEFLRTVYQLFADYVLKNPFYETDMPIRVEKFDAAVDRL 387
            L++++R+GGL+YN+DL+   PRL  N++L   S FH L++IA+Q+AP+ S GIE LE D+  L+CFQS TG+KF +TA  G+  L   L  +Y+L+ADYVLKNPFYE DMPIR + F   V+RL
Sbjct:    8 LFVISRSGGLIYNKDLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERL 131          
BLAST of mRNA_S-firma_F_contig10721.978.1 vs. uniprot
Match: L1I8E0_GUITC (Trafficking protein particle complex subunit n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I8E0_GUITC)

HSP 1 Score: 142 bits (359), Expect = 3.340e-41
Identity = 71/130 (54.62%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   13 TLYIVNRAGGLVYNRDLAPGVPRLAANDYLRNASMFHSLYAIASQLAPV-PSVGIETLEADSFTLECFQSPTGIKFFVTARLGSSGLQEFLRTVYQLFADYVLKNPFYETDMPIRVEKFDAAVDRLAASR 399
            TL+I+N+AGGL+Y R  +  +  L  ND LR AS FHS++AIA +L PV P  GIETLEADSF LEC+QSPTGIKF + A      L   L+ +Y +F+DYVLKNPFYE DMP++ + F+  VD L  S+
Sbjct:    7 TLFIINKAGGLIYTRHFSQDIAPLNVNDCLRLASTFHSMHAIAGRLTPVGPPTGIETLEADSFRLECYQSPTGIKFLMLAEPKVVALDALLKQIYIIFSDYVLKNPFYELDMPVQCDLFNIKVDALVQSK 136          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10721.978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1GE63_9STRA3.080e-5266.14Trafficking protein particle complex subunit n=1 T... [more]
A0A2D4CAE8_PYTIN1.120e-4658.87Trafficking protein particle complex subunit n=2 T... [more]
K3WRL1_GLOUD4.540e-4658.06Trafficking protein particle complex subunit n=1 T... [more]
F0WDB3_9STRA3.480e-4555.65Trafficking protein particle complex subunit n=3 T... [more]
A0A7S2RJT7_9STRA5.770e-4558.27Trafficking protein particle complex subunit n=1 T... [more]
H3GHR7_PHYRM1.200e-4457.02Trafficking protein particle complex subunit n=18 ... [more]
M4BAF1_HYAAE1.200e-4255.37Trafficking protein particle complex subunit n=1 T... [more]
D7FQ99_ECTSI3.420e-4254.84Trafficking protein particle complex subunit n=2 T... [more]
K8Z5G7_NANGC1.120e-4153.23Trafficking protein particle complex subunit (Frag... [more]
L1I8E0_GUITC3.340e-4154.62Trafficking protein particle complex subunit n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10721contigS-firma_F_contig10721:1516..2366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog65071.PYU1_T007605
PFAMsSybindin
Max annot lvl121069|Pythiales
Evalue7.44e-47
EggNOG OGsCOG5122@1|root,KOG3369@2759|Eukaryota,1MGS7@121069|Pythiales
DescriptionSource PGD
COG categoryU
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSybindin-like protein
Ec32 orthologEc-01_006940.1
Exons2
Model size414
Cds size414
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.344029-CDS-S-firma_F_contig10721:1515..15721622815613.344029-CDS-S-firma_F_contig10721:1515..1572Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10721 1516..1572 +
1696949454.2612953-CDS-S-firma_F_contig10721:1515..15721696949454.2612953-CDS-S-firma_F_contig10721:1515..1572Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10721 1516..1572 +
1622815613.3567934-CDS-S-firma_F_contig10721:2009..23661622815613.3567934-CDS-S-firma_F_contig10721:2009..2366Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10721 2010..2366 +
1696949454.2744472-CDS-S-firma_F_contig10721:2009..23661696949454.2744472-CDS-S-firma_F_contig10721:2009..2366Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10721 2010..2366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10721.978.1prot_S-firma_F_contig10721.978.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10721 1516..2366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10721.978.1

>prot_S-firma_F_contig10721.978.1 ID=prot_S-firma_F_contig10721.978.1|Name=mRNA_S-firma_F_contig10721.978.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=138bp
MSLFTLYIVNRAGGLVYNRDLAPGVPRLAANDYLRNASMFHSLYAIASQL
APVPSVGIETLEADSFTLECFQSPTGIKFFVTARLGSSGLQEFLRTVYQL
FADYVLKNPFYETDMPIRVEKFDAAVDRLAASRDVSL*
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mRNA from alignment at S-firma_F_contig10721:1516..2366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10721.978.1 ID=mRNA_S-firma_F_contig10721.978.1|Name=mRNA_S-firma_F_contig10721.978.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=851bp|location=Sequence derived from alignment at S-firma_F_contig10721:1516..2366+ (Sphaerotrichia firma ET2_F female)
ATGTCTCTGTTCACCCTGTACATTGTGAATCGGGCGGGCGGCCTGGTGTA CAACAGGGTGGGTCCCGCTCTTCCCTGGCATGCCTTCTAAATGAGCTCTT GTGTGTGTGTGCGTGTGTGTGTGTGCGTGTGGCAGTGTGGGCAGTGTGGC AGTGTGTGTGCGTGTCTGTGTGTGGCGGTGTGTATGTGGCAGTGTGTATG TAAGTTTGTGTGTGTATGTGGCAGTGGCAGTGTGTTTGGCAGTGTGTGTG TGGCAGTGTGGCAGTGTGTGTGTGTGTGGCAGCGTGTTTGTGGCAGCGTG TATGTAAGTGTGTGTGTGTGGCAGTGTGCGTACGTGTATGTGCGTGTCCA GTACGTGTGTGTGTTTGGCAATGTCTTTCTCTCTTCCCCAATCATTCTTG CGTGTGGTTGTGTGTGTGTTGTTTCCTGACAAACTCTTACCGCCCTTCAC TCTTTTACATCCTCCACATCCTCATGTACCCCTCCCCCCTCCAGGACCTT GCCCCCGGGGTGCCCCGCCTGGCCGCCAACGACTACCTCCGCAACGCCTC CATGTTCCACTCCCTGTACGCCATTGCGTCCCAGCTGGCGCCCGTGCCCT CTGTCGGCATTGAAACCCTGGAGGCGGACTCCTTCACCCTGGAGTGCTTC CAGTCACCCACCGGCATCAAGTTCTTTGTGACGGCCAGGCTGGGCTCCAG TGGCCTCCAGGAGTTCCTCCGCACCGTGTACCAGCTGTTCGCGGACTACG TCCTCAAGAACCCGTTCTACGAGACGGACATGCCCATCCGGGTGGAGAAG TTTGACGCCGCCGTGGACCGCCTGGCGGCCTCCCGAGACGTGTCCCTGTA A
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Coding sequence (CDS) from alignment at S-firma_F_contig10721:1516..2366+

>mRNA_S-firma_F_contig10721.978.1 ID=mRNA_S-firma_F_contig10721.978.1|Name=mRNA_S-firma_F_contig10721.978.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=828bp|location=Sequence derived from alignment at S-firma_F_contig10721:1516..2366+ (Sphaerotrichia firma ET2_F female)
ATGTCTCTGTTCACCCTGTACATTGTGAATCGGGCGGGCGGCCTGGTGTA
CAACAGGATGTCTCTGTTCACCCTGTACATTGTGAATCGGGCGGGCGGCC
TGGTGTACAACAGGGACCTTGCCCCCGGGGTGCCCCGCCTGGCCGCCAAC
GACTACCTCCGCAACGCCTCCATGTTCCACTCCCTGTACGCCATTGCGTC
CCAGCTGGCGCCCGTGCCCTCTGTCGGCATTGAAACCCTGGAGGCGGACT
CCTTCACCCTGGAGTGCTTCCAGTCACCCACCGGCATCAAGTTCTTTGTG
ACGGCCAGGCTGGGCTCCAGTGGCCTCCAGGAGTTCCTCCGCACCGTGTA
CCAGCTGTTCGCGGACTACGTCCTCAAGAACCCGTTCTACGAGACGGACA
TGCCCATCCGGGTGGAGAAGTTTGACGCCGCCGTGGACCGCCTGGCGGCC
TCCCGAGACGTGTCCCTGTAAGACCTTGCCCCCGGGGTGCCCCGCCTGGC
CGCCAACGACTACCTCCGCAACGCCTCCATGTTCCACTCCCTGTACGCCA
TTGCGTCCCAGCTGGCGCCCGTGCCCTCTGTCGGCATTGAAACCCTGGAG
GCGGACTCCTTCACCCTGGAGTGCTTCCAGTCACCCACCGGCATCAAGTT
CTTTGTGACGGCCAGGCTGGGCTCCAGTGGCCTCCAGGAGTTCCTCCGCA
CCGTGTACCAGCTGTTCGCGGACTACGTCCTCAAGAACCCGTTCTACGAG
ACGGACATGCCCATCCGGGTGGAGAAGTTTGACGCCGCCGTGGACCGCCT
GGCGGCCTCCCGAGACGTGTCCCTGTAA
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