mRNA_S-firma_F_contig1071.964.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1071.964.1
Unique NamemRNA_S-firma_F_contig1071.964.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1071.964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1071contigS-firma_F_contig1071:23592..24632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1010
Cds size1008
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.5843885-CDS-S-firma_F_contig1071:23591..238811622815611.5843885-CDS-S-firma_F_contig1071:23591..23881Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 23592..23881 +
1696949453.0094888-CDS-S-firma_F_contig1071:23591..238811696949453.0094888-CDS-S-firma_F_contig1071:23591..23881Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 23592..23881 +
1622815611.596838-CDS-S-firma_F_contig1071:23912..246301622815611.596838-CDS-S-firma_F_contig1071:23912..24630Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 23913..24630 +
1696949453.0181038-CDS-S-firma_F_contig1071:23912..246301696949453.0181038-CDS-S-firma_F_contig1071:23912..24630Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 23913..24630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1071.964.1prot_S-firma_F_contig1071.964.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1071 23592..24630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1071.964.1

>prot_S-firma_F_contig1071.964.1 ID=prot_S-firma_F_contig1071.964.1|Name=mRNA_S-firma_F_contig1071.964.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=336bp
PPTPQGQYQQWQSQQFARASAAGAAAASGGYSSIAGAGGGYGSPPPSLSG
YGSSSPAAPPTRRRTSPLVANAPRLTVIPASKPAAVQTGTTAVTTEFSSS
SSSSSSEDRRQREEGRDRQNGARGASAAVASKPKAIAKDPPPVAAAAAAA
AGSWPQSRRQKGRVCCLPPRAPKRWVLAAVLGPVAMEVPCPEHSRDNNLR
RQVDRSLKVEEEEQEEGKEEEKEEEEEAFRGPAKASRRPESLPRSSRPGP
PCPLPPARRGRRGDLRSSRARSTRSPRPSATAASAAMTTTISLPGWPDTA
AAAVQIAAVAEVAWGRAPVSRSCAVPVPAGGTDLDG
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mRNA from alignment at S-firma_F_contig1071:23592..24632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1071.964.1 ID=mRNA_S-firma_F_contig1071.964.1|Name=mRNA_S-firma_F_contig1071.964.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1041bp|location=Sequence derived from alignment at S-firma_F_contig1071:23592..24632+ (Sphaerotrichia firma ET2_F female)
CCACCGACCCCACAAGGCCAATACCAGCAGTGGCAAAGCCAGCAATTCGC
TCGGGCTTCGGCAGCAGGAGCAGCAGCAGCCAGCGGTGGCTACTCCAGCA
TTGCTGGGGCTGGAGGGGGATATGGATCACCGCCGCCGTCGTTATCGGGG
TACGGATCATCGTCACCGGCGGCGCCGCCGACGAGACGCCGCACGTCGCC
GCTGGTTGCTAACGCCCCCCGCCTGACCGTCATCCCGGCCTCGAAACCCG
CGGCTGTGCAAACTGGAACGACAGCAGTAACGACGGAATTGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCG
AGGACCGTCGCCAAAGGGAAGAGGGGCGGGACCGTCAAAATGGGGCTCGT
GGGGCATCAGCCGCGGTGGCGTCGAAGCCAAAAGCAATAGCAAAGGACCC
ACCGCCGGTGGCAGCAGCAGCAGCAGCAGCAGCAGGAAGCTGGCCTCAGA
GCCGGCGGCAGAAAGGACGGGTCTGCTGTCTTCCGCCGCGCGCCCCGAAG
CGGTGGGTTTTGGCGGCGGTGTTAGGGCCGGTGGCGATGGAGGTTCCCTG
TCCGGAACATTCTCGCGACAACAATCTGCGCCGGCAAGTAGATCGTTCGC
TGAAGGTGGAGGAGGAGGAGCAAGAAGAGGGAAAGGAAGAGGAAAAGGAA
GAGGAAGAGGAAGCCTTCCGAGGACCGGCGAAGGCTTCGCGGCGGCCGGA
AAGCCTTCCCCGTTCCTCGCGGCCCGGTCCTCCCTGTCCTCTTCCTCCGG
CAAGAAGGGGGCGACGTGGAGATCTCCGCTCGAGCAGAGCGCGGTCAACC
CGTTCTCCGCGTCCTTCAGCGACAGCAGCATCCGCGGCGATGACGACCAC
GATCAGCCTGCCTGGCTGGCCGGATACGGCGGCGGCGGCGGTGCAAATCG
CGGCGGTGGCAGAGGTGGCGTGGGGGCGGGCGCCGGTCAGCCGCTCTTGC
GCCGTGCCGGTACCGGCGGGGGGTACGGATCTGGATGGGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig1071:23592..24632+

>mRNA_S-firma_F_contig1071.964.1 ID=mRNA_S-firma_F_contig1071.964.1|Name=mRNA_S-firma_F_contig1071.964.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2016bp|location=Sequence derived from alignment at S-firma_F_contig1071:23592..24632+ (Sphaerotrichia firma ET2_F female)
CCACCGACCCCACAAGGCCAATACCAGCAGTGGCAAAGCCAGCAATTCGC
TCGGGCTTCGGCAGCAGGAGCAGCAGCAGCCAGCGGTGGCTACTCCAGCA
TTGCTGGGGCTGGAGGGGGATATGGATCACCGCCGCCGTCGTTATCGGGG
TACGGATCATCGTCACCGGCGGCGCCGCCGACGAGACGCCGCACGTCGCC
GCTGGTTGCTAACGCCCCCCGCCTGACCGTCATCCCGGCCTCGAAACCCG
CGGCTGTGCAAACTGGAACGACAGCAGTAACGACGGAATTCCACCGACCC
CACAAGGCCAATACCAGCAGTGGCAAAGCCAGCAATTCGCTCGGGCTTCG
GCAGCAGGAGCAGCAGCAGCCAGCGGTGGCTACTCCAGCATTGCTGGGGC
TGGAGGGGGATATGGATCACCGCCGCCGTCGTTATCGGGGTACGGATCAT
CGTCACCGGCGGCGCCGCCGACGAGACGCCGCACGTCGCCGCTGGTTGCT
AACGCCCCCCGCCTGACCGTCATCCCGGCCTCGAAACCCGCGGCTGTGCA
AACTGGAACGACAGCAGTAACGACGGAATTCAGCAGCAGCAGCAGCAGCA
GCAGCAGCGAGGACCGTCGCCAAAGGGAAGAGGGGCGGGACCGTCAAAAT
GGGGCTCGTGGGGCATCAGCCGCGGTGGCGTCGAAGCCAAAAGCAATAGC
AAAGGACCCACCGCCGGTGGCAGCAGCAGCAGCAGCAGCAGCAGGAAGCT
GGCCTCAGAGCCGGCGGCAGAAAGGACGGGTCTGCTGTCTTCCGCCGCGC
GCCCCGAAGCGGTGGGTTTTGGCGGCGGTGTTAGGGCCGGTGGCGATGGA
GGTTCCCTGTCCGGAACATTCTCGCGACAACAATCTGCGCCGGCAAGTAG
ATCGTTCGCTGAAGGTGGAGGAGGAGGAGCAAGAAGAGGGAAAGGAAGAG
GAAAAGGAAGAGGAAGAGGAAGCCTTCCGAGGACCGGCGAAGGCTTCGCG
GCGGCCGGAAAGCCTTCCCCGTTCCTCGCGGCCCGGTCCTCCCTGTCCTC
TTCCTCCGGCAAGAAGGGGGCGACGTGGAGATCTCCGCTCGAGCAGAGCG
CGGTCAACCCGTTCTCCGCGTCCTTCAGCGACAGCAGCATCCGCGGCGAT
GACGACCACGATCAGCCTGCCTGGCTGGCCGGATACGGCGGCGGCGGCGG
TGCAAATCGCGGCGGTGGCAGAGGTGGCGTGGGGGCGGGCGCCGGTCAGC
CGCTCTTGCGCCGTGCCGGTACCGGCGGGGGGTACGGATCTGGATGGGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCGAGGACCGTCGCCAAAGGGAAGAG
GGGCGGGACCGTCAAAATGGGGCTCGTGGGGCATCAGCCGCGGTGGCGTC
GAAGCCAAAAGCAATAGCAAAGGACCCACCGCCGGTGGCAGCAGCAGCAG
CAGCAGCAGCAGGAAGCTGGCCTCAGAGCCGGCGGCAGAAAGGACGGGTC
TGCTGTCTTCCGCCGCGCGCCCCGAAGCGGTGGGTTTTGGCGGCGGTGTT
AGGGCCGGTGGCGATGGAGGTTCCCTGTCCGGAACATTCTCGCGACAACA
ATCTGCGCCGGCAAGTAGATCGTTCGCTGAAGGTGGAGGAGGAGGAGCAA
GAAGAGGGAAAGGAAGAGGAAAAGGAAGAGGAAGAGGAAGCCTTCCGAGG
ACCGGCGAAGGCTTCGCGGCGGCCGGAAAGCCTTCCCCGTTCCTCGCGGC
CCGGTCCTCCCTGTCCTCTTCCTCCGGCAAGAAGGGGGCGACGTGGAGAT
CTCCGCTCGAGCAGAGCGCGGTCAACCCGTTCTCCGCGTCCTTCAGCGAC
AGCAGCATCCGCGGCGATGACGACCACGATCAGCCTGCCTGGCTGGCCGG
ATACGGCGGCGGCGGCGGTGCAAATCGCGGCGGTGGCAGAGGTGGCGTGG
GGGCGGGCGCCGGTCAGCCGCTCTTGCGCCGTGCCGGTACCGGCGGGGGG
TACGGATCTGGATGGG
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