mRNA_S-firma_F_contig1071.962.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1071.962.1
Unique NamemRNA_S-firma_F_contig1071.962.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1071.962.1 vs. uniprot
Match: D7G484_ECTSI (Lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G484_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 5.770e-141
Identity = 236/351 (67.24%), Postives = 258/351 (73.50%), Query Frame = 2
Query:  275 LQEALARCEVILRAGE----AAGIEQASGKTSAVAPLASENVDSSKSSGPLDGLRRFSRDGADGVFMGAAGVPVRYRLFPKYSPEEEGS--KLRPGVVLLTGLMESMVKYGETIAHLNDRGFSVYTYDHHGQGLSGRLPVPDSADTTVAHITDFDHYVQDLVQFSKVVLPAMVPLHLHRDESGSRGGGGEAAIADVVGESSSLPLENGD--GDGGP---LKLSVIAHSMGGLVAVKAALEEPLLFEGMVLAAPMLAPNTGKLSNGIVGAVAWVATKLA-QGHRSPIRRPARATMEWSKVTHDRRRLRLWETLRGEVSCVLQRGPSFAWLSQAVRASKRGRRRLGDLSVSVL 1291
            L++ LA+CE    AG       G   +S   S  A  A      S  S PL+GLRRFSRDG DGVFMGAAGVPVRYRLFPKYS  E     KL+PGV+LLTGLMESM KYGETIAHLNDRGFSVYTYDHHGQGLSGRLPVPD AD TVAHITDFDHYVQDL +FSKV+LPA V     RD SG    GG+         S   P+ NG+  G   P   L LSV+AHSMGGL+AV AAL EP LF+G+VLAAPMLAPNTGKL NG+VGA+ WV TKL  QGHRSPIRRPARATMEWS+VTHD+ RLRLWETLRG V CVLQRGPSFAWLS++V ASKR R RL  LSV VL
Sbjct:    2 LRQVLAQCEAAFLAGTEDATTPGSVPSSSSASETAAAAPGPKQLSAKSAPLEGLRRFSRDGTDGVFMGAAGVPVRYRLFPKYSKGEGDGCGKLQPGVILLTGLMESMTKYGETIAHLNDRGFSVYTYDHHGQGLSGRLPVPDGADPTVAHITDFDHYVQDLERFSKVILPATVR---PRDASGGTRTGGQGTAG-----SGDSPVVNGEPLGCDAPFPALSLSVVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPNTGKLPNGVVGALTWVVTKLGRQGHRSPIRRPARATMEWSRVTHDKERLRLWETLRGTVGCVLQRGPSFAWLSKSVLASKRARGRLHQLSVPVL 344          
BLAST of mRNA_S-firma_F_contig1071.962.1 vs. uniprot
Match: A0A6H5KMI3_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI3_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 1.960e-70
Identity = 131/198 (66.16%), Postives = 146/198 (73.74%), Query Frame = 2
Query:  710 TDFDHYVQDLVQFSKVVLPAMVPLHLHRDESGSRGGGGEAAIADVVGESSSLPLENG-----DGDGGPLKLSVIAHSMGGLVAVKAALEEPLLFEGMVLAAPMLAPNTGKLSNGIVGAVAWVATKLA-QGHRSPIRRPARATMEWSKVTHDRRRLRLWETLRGEVSCVLQRGPSFAWLSQAVRASKRGRRRLGDLSVS 1285
            +DFDHYVQDLV+FSKV+LPA V     RD SG  G             S   P+ NG     DG    L LSV+AHSMGGL+AV AAL EP LF+G+VLAAPMLAP TGKL NG+VGA+AWV TKL  QGHRSPIRRPARA+MEWS+VTHD+ RLRLWETLRG V CVLQRGPSFAWLS++V ASKR R RL  LSVS
Sbjct:    3 SDFDHYVQDLVRFSKVILPATVR---PRDASGGTG-----TXXXXXXXSGDPPVVNGELLGSDGTLPALSLSVVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVGALAWVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLRLWETLRGIVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSVS 192          
BLAST of mRNA_S-firma_F_contig1071.962.1 vs. uniprot
Match: A0A0G4ERV7_VITBC (Hydrolase_4 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ERV7_VITBC)

HSP 1 Score: 119 bits (298), Expect = 1.090e-25
Identity = 100/285 (35.09%), Postives = 130/285 (45.61%), Query Frame = 2
Query:  419 GLRRFSRDGADGVFMGAAGVPVRYRLFPKYSPEEEGSKLRPGVVLLTGLMESMVKYGETIAHLNDRGFSVYTYDHHGQGLSGRLPVPDSADTTVAHITDFDHYVQDLVQFSKVVLPAMVPLHLHRDESGSRGGGGEAAIADVVGESSSLPLENGDGDGGPLKLSVIAHSMG---GLVAV---KAALEEPLLFEGMVLAAPMLAPNTGKLSNGIVGAVAWVATKLAQGHRSPIR-RPARATMEWSKVTHDRRRLRLWETLRGEVSCVLQRGPSFAWLSQAVRASKR 1252
            G+  F R G  G F GA GV + YR FP Y  + EG+ L PGVV+ TG  E  VKYGE I  L   GFSV+T+DH  QGLSG           + H+  F HY  DL  F   V+ A  P H                 +  +  +   P            L  +AHSMG   GLVA    K +     LF  M L+APMLA  T    N     +A +A    +  RSP+   P       +++THD  R   WE +RG +   + RGPSF W+ + ++A  R
Sbjct:  157 GITFFVRHGRHGSFRGANGVRIVYRAFPHY--DSEGALL-PGVVVATGWSECHVKYGELIRDLYRAGFSVFTFDHRCQGLSGHEL--GEGRPWITHVERFHHYTDDLTTFVNEVVKA-TPTHR----------------SPAIARTRPAP-----------PLFYVAHSMGAFIGLVAQHNSKQSDPPSPLFCRMALSAPMLAMKTPAGPNRFAIWLARIAILAGRKIRSPLGDHPVENPELGARITHDDDRKSAWERMRGMLPRTMIRGPSFNWIKEGMKAGFR 408          
BLAST of mRNA_S-firma_F_contig1071.962.1 vs. uniprot
Match: A0A1L4D1T5_9PROT (Hydrolase_4 domain-containing protein n=1 Tax=Silvanigrella aquatica TaxID=1915309 RepID=A0A1L4D1T5_9PROT)

HSP 1 Score: 91.7 bits (226), Expect = 8.220e-17
Identity = 86/296 (29.05%), Postives = 128/296 (43.24%), Query Frame = 2
Query:  431 FSRDGADGVFMGAAGVPVRYRLFPKYSPEEEGSKLRPGVVLLTGLMESMVKYGETIAHLNDRGFSVYTYDHHGQGLSGRLPVPDSADTTVAHITDFDHYVQDLVQFSKVVLPAMVPLHLHRDESGSRGGGGEAAIADVVGESSSLPLENGDGDGGPLKLSVIAHSMGGLVAVKAALEEPLLFEGMVLAAPM----LAPNTGKLSNGIVGAVAWV-----ATKLAQGHRSPIRRPARATMEWSKVTHDRRRLRLWETLRGEVSCVLQRGPSFAWLSQAVRASKRGRRRLGDLSVSVL 1291
            +   G    F+G A V +  R F   +   +       ++L TG  ES +KY E I +L + GFSVY YDH GQG SGR    +       ++  F++YV DL  F + V             SGS              + + LP+              IAHSMGG +   A  E+ +   G++L+APM    L P    L   + G ++ +     A K A G    I  P R   E + VTH + R  +W     E+  +   GP+F WL +AV AS+  R+    +++ +L
Sbjct:   35 YKAKGVSEQFLGVADVAISCRTFLAQNATAK-------IILCTGYNESYLKYSELIMNLCESGFSVYCYDHRGQGFSGRFLNQEKR----GYVDKFENYVDDLCYFFEQV-------------SGS--------------QKNDLPI------------FFIAHSMGGAICSLAVNEKKINPNGVILSAPMHEIMLTPYH-ILEVPVYGILSLMCKLNYANKYAFGQTDCI--PFRP-FEGNDVTHSKARYSVWRKHIDEIEDMQLGGPTFQWLKEAVGASRTCRKHFAKMNIPIL 276          
BLAST of mRNA_S-firma_F_contig1071.962.1 vs. uniprot
Match: A0A833JGU7_9PROT (Alpha/beta fold hydrolase n=1 Tax=Fluviispira multicolorata TaxID=2654512 RepID=A0A833JGU7_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 1.510e-16
Identity = 75/293 (25.60%), Postives = 130/293 (44.37%), Query Frame = 2
Query:  431 FSRDGADGVFMGAAGVPVRYRLFPKYSPEEEGSKLRPGVVLLTGLMESMVKYGETIAHLNDRGFSVYTYDHHGQGLSGRLPVPDSADTTVAHITDFDHYVQDLVQFSKVVLPAMVPLHLHRDESGSRGGGGEAAIADVVGESSSLPLENGDGDGGPLKLSVIAHSMGGLVAVKAALEEPLLFEGMVLAAPM--LAPNTGKLSNGIVGAVAWVATKLAQGHRSPIRR----PARATMEWSKVTHDRRRLRLWETLRGEVSCVLQRGPSFAWLSQAVRASKRGRRRLGDLSVSVL 1291
            +   G+   F+G   +P+  R+F       E SK    ++L TG  ES +KY E I +L + GFSVY +DH GQG SGR    +       ++  F++YV+DL  + + +                           V G    LP              ++AHSMGG +A  A   + +   G++L++PM  +A +   +   ++ ++  +  KL +       +    P R   E + VT+ + R  +W     E+  +   GP+F W+ +A++AS+  R+   D +V +L
Sbjct:   35 YKSQGSTNQFLGVNDIPISCRIF-------ENSKATVKILLCTGYNESYLKYAELIMNLFEMGFSVYCFDHRGQGFSGRFIGQEKK----GYVDHFENYVEDLSFYFENI---------------------------VNGHQVELPT------------FILAHSMGGAIATLAVCGKKITPYGVILSSPMHAIALSPYLILEYLIYSLTNIFCKLGKNKEYVFGQTDCIPFRP-FEGNDVTNSKFRYEIWRKHISEIDDMQLGGPTFGWMREAIKASRSARKMGYDNNVPIL 276          
BLAST of mRNA_S-firma_F_contig1071.962.1 vs. uniprot
Match: A0A7X1HAY5_9HYPH (Alpha/beta hydrolase n=1 Tax=Rhizobium sp. AQ_MP TaxID=2761536 RepID=A0A7X1HAY5_9HYPH)

HSP 1 Score: 86.3 bits (212), Expect = 5.010e-15
Identity = 80/271 (29.52%), Postives = 119/271 (43.91%), Query Frame = 2
Query:  452 GVFMGAAGVPVRYRLFPKYSPEEEGSKLRPGVVLLTGLMESMVKYGETIAHLNDRGFSVYTYDHHGQGLSGRLPVPDSADTTVAHITDFDHYVQDLVQF-SKVVLPAMVPLHLHRDESGSRGGGGEAAIADVVGESSSLPLENGDGDGGPLKLSVIAHSMGGLVAVKAALEEPLLFEGMVLAAPMLAPNTGKLSNGIVGAVAWVATKLAQGHRSPIRRPARATMEWSKVTHDRRRLRLWETLRGEVSCVLQRGPSFAWLSQAVRASKRGRR 1261
            G F G  GV +RY +F   +P+  G+     +VLL G  E++ KY ETI  LN+RGF V TYD  GQG S RL      DT   H+  FDHY++DL  F  ++VLP                              + LP              ++AHS GGL+A+KAA       E MVLAAP +     + S   +  +A +A+    G  +  +       E + +T D  R    + +  +   +    P+  W+ ++ +A +  RR
Sbjct:   20 GFFQGHRGVRLRYAVFRSQAPKTLGT-----IVLLHGRNETIEKYFETIRELNERGFWVATYDFRGQGGSERL----LKDTRRGHVARFDHYIRDLEIFLEQIVLP-----------------------------DTRLPF------------FLVAHSTGGLIALKAAPRLANRIERMVLAAPFVGLGGQRTSPENIRRLAMLASFTGLGRVTLNKDEPLKPFEGNPLTSDALRFARNQRILTDHPELALGPPTARWIYESQKAIEAIRR 240          
BLAST of mRNA_S-firma_F_contig1071.962.1 vs. uniprot
Match: A0A369KX79_9PROT (Alpha/beta hydrolase n=1 Tax=Spirobacillus cienkowskii TaxID=495820 RepID=A0A369KX79_9PROT)

HSP 1 Score: 85.1 bits (209), Expect = 1.340e-14
Identity = 78/293 (26.62%), Postives = 126/293 (43.00%), Query Frame = 2
Query:  431 FSRDGADGVFMGAAGVPVRYRLFPKYSPEEEGSKLRPGVVLLTGLMESMVKYGETIAHLNDRGFSVYTYDHHGQGLSGRLPVPDSADTTVAHITDFDHYVQDLVQFSKVVLPAMVPLHLHRDESGSRGGGGEAAIADVVGESSSLPLENGDGDGGPLKLSVIAHSMGGLVAVKAALEEPLLFEGMVLAAPMLAPNTG--KLSNGIVGAVAWVATKLAQGHRSPIRR----PARATMEWSKVTHDRRRLRLWETLRGEVSCVLQRGPSFAWLSQAVRASKRGRRRLGDLSVSVL 1291
            +S  G +  F GA  + +  R+F   +P+ +        +L TG  ES +KY E I +L + GFSVY +DH GQG S R     S  +   ++  F+HY+ DL QF   V     P+                           LP+             +IAHSMGG +++ A L + +    +VL+APML    G  +L    V  ++ +   L +       +    P R   E + VT+ + R   W     ++  +   GP+F W+ QA+  SK+ R+   ++   +L
Sbjct:   35 YSSQGQEYKFQGANNISISARIFIHSTPKGK-------FLLTTGYNESHLKYAEFIMNLFEMGFSVYCFDHRGQGFSERF----SEQSKRGYVDKFEHYINDLSQFFDYVSRHDNPV---------------------------LPVH------------IIAHSMGGAISLLALLNQKITPRSLVLSAPMLEIVLGPTRLLELPVLYLSHLMCLLGRSKNYVFGQTDCIPFRP-FEGNDVTNSKGRYTAWRNHIHDLEEMQLGGPTFGWMQQAILFSKKIRKTKNEIKTPIL 276          
BLAST of mRNA_S-firma_F_contig1071.962.1 vs. uniprot
Match: A0A1T4RA10_9HYPH (Lysophospholipase, alpha-beta hydrolase superfamily n=1 Tax=Consotaella salsifontis TaxID=1365950 RepID=A0A1T4RA10_9HYPH)

HSP 1 Score: 86.3 bits (212), Expect = 1.580e-14
Identity = 94/314 (29.94%), Postives = 130/314 (41.40%), Query Frame = 2
Query:  365 APLASENVDSSKSSGPLDGLRRFSRD-------GADGVFMGAA-GVPVRYRLFPKYSPEEEGSKLRPGVVLLTGLMESMVKYGETIAHLNDRGFSVYTYDHHGQGLSGRLPVPDSADTTVAHITDFDHYVQDLVQFSK-VVLPAMVPLHLHRDESGSRGGGGEAAIADVVGESSSLPLENGDGDGGPLKLSVIAHSMGGLVAVKAALEEPLLFEGMVLAAPMLAPNTGKLSNGIVGAVAWVATKLAQGHRSPIRRPARATMEWSKV----THDRRRLRLWETLRGEVSCVLQRGPSFAWLSQAVRASKRGRRRL 1267
            APLA E      SS   +   RF          G  G ++    G+ +RY + P   P   G+     V+LL G  E++ KY ETI  L  RGF V T+D  GQG S RL      +T   H++   +Y++DL  F + VVLP   P H+                                         ++AHSMGGL+A+  A       + MVLAAP++    G++   +  A+A +      G R P+R  A     WS +    THD RR +    LR     +    PS +W    VRA   G RRL
Sbjct:  138 APLADETAPEDDSSASREEEVRFFETEENPAPAGLKGGWLTTGDGIHLRYAVCPSALPRTRGT-----VLLLQGRNEAVEKYFETIGDLAARGFMVATFDWRGQGGSDRL----LRNTRRGHVSHLKYYLRDLEAFLQAVVLPDCRPPHV-----------------------------------------ILAHSMGGLIALTGAGNLLNRIDRMVLAAPLIDLPRGRMGPRLRSALASLMHFTGMG-RLPVRHRAGQERRWSALQNPLTHDVRRFQRNRALREGAPSLFLDSPSASW----VRAILAGMRRL 396          
BLAST of mRNA_S-firma_F_contig1071.962.1 vs. uniprot
Match: UPI001FD6C9F9 (alpha/beta hydrolase n=1 Tax=Rhizobium sp. SSM4.3 TaxID=2919917 RepID=UPI001FD6C9F9)

HSP 1 Score: 84.7 bits (208), Expect = 1.680e-14
Identity = 81/265 (30.57%), Postives = 114/265 (43.02%), Query Frame = 2
Query:  452 GVFMGAAGVPVRYRLFPKYSPEEEGSKLRPGVVLLTGLMESMVKYGETIAHLNDRGFSVYTYDHHGQGLSGRLPVPDSADTTVAHITDFDHYVQDLVQF-SKVVLPAMVPLHLHRDESGSRGGGGEAAIADVVGESSSLPLENGDGDGGPLKLSVIAHSMGGLVAVKAALEEPLLFEGMVLAAPMLAPNTGKLSNGIVGAVAWVATKLAQGHRSPIRRPARATMEWSKVTHDRRRLRLWETLRGEVSCVLQRGPSFAWLSQAVRA 1243
            G F G  G  +RY +F   SP+ +G+     +VLL G  E++ KY ETI  LN+ GF V TYD  GQG SGRL      D    H+  FDHY++DL  F  ++VLP                              + LP              ++AHS GGL+A+KAA       E MVL AP +     K S   +  VA +A     G  +  +  A    E + +T D  R    + L  +   +    P+  WL ++ +A
Sbjct:   20 GFFEGYRGARLRYAVFRSSSPKPKGT-----IVLLHGRNETIEKYFETIRDLNEHGFWVATYDFRGQGGSGRL----LKDPRKGHVGRFDHYIRDLEIFLEQIVLP-----------------------------DTRLPF------------FMLAHSTGGLIALKAAPRLSNRIERMVLTAPFVGLGGQKTSPENIRRVAALAAFTGFGQITLNKDEALKRFEGNPLTTDALRFARNQRLFVDHPELALGPPTARWLYESQKA 234          
BLAST of mRNA_S-firma_F_contig1071.962.1 vs. uniprot
Match: A0A3B0VQU3_9ZZZZ (Lysophospholipase L2 n=2 Tax=root TaxID=1 RepID=A0A3B0VQU3_9ZZZZ)

HSP 1 Score: 85.1 bits (209), Expect = 1.820e-14
Identity = 79/292 (27.05%), Postives = 117/292 (40.07%), Query Frame = 2
Query:  431 FSRDGADGVFMGAAGVPVRYRLFPKYSPEEEGSKLRPGVVLLTGLMESMVKYGETIAHLNDRGFSVYTYDHHGQGLSGRLPVPDSADTTVAHITDFDHYVQDLVQFSKVVLPAMVPLHLHRDESGSRGGGGEAAIADVVGESSSLPLENGDGDGGPLKLSVIAHSMGGLVAVKAALEEPLLFEGMVLAAPMLAPNTGKLSNGIVGAVAWVATKLAQGH-----RSPIRRPARATMEWSKVTHDRRRLRLWETLRGEVSCVLQRGPSFAWLSQAVRASKRGRRRLGDLSVSVL 1291
            F+     G  +GA GV + Y        + E S  +  +V++ G  E   KY E    L D  +S Y YDH GQGLSGRL      D     +  F +YV DL +F + V    V    H+                                    +L ++AHSMGG +A+  ++E P +  GM+L +PML  NT    N +   +    T L  G        P   PA+A +  + +TH   R  L + L  +        P+F WL ++    K+     G L + +L
Sbjct:   70 FTTQFKTGTMLGAGGVAIHYA-------KREISGEQAALVIVDGRTEYTTKYAELFYDLRDMPWSFYIYDHRGQGLSGRL----LRDYQKGDVERFSNYVADLKEFIQTV----VKKKPHK------------------------------------RLFILAHSMGGTIAIIYSIENPGILSGMILCSPMLQINTAPYPNELARLLTAGITDLGGGGFYVFGGGPYN-PAKAFVG-NDLTHSAARFALNKKLLHKFPADELGSPTFKWLYESFEGMKKANAGAGKLRMPIL 308          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1071.962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G484_ECTSI5.770e-14167.24Lysophospholipase l2 pldb, hydrolase of alpha/beta... [more]
A0A6H5KMI3_9PHAE1.960e-7066.16Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A0G4ERV7_VITBC1.090e-2535.09Hydrolase_4 domain-containing protein n=1 Tax=Vitr... [more]
A0A1L4D1T5_9PROT8.220e-1729.05Hydrolase_4 domain-containing protein n=1 Tax=Silv... [more]
A0A833JGU7_9PROT1.510e-1625.60Alpha/beta fold hydrolase n=1 Tax=Fluviispira mult... [more]
A0A7X1HAY5_9HYPH5.010e-1529.52Alpha/beta hydrolase n=1 Tax=Rhizobium sp. AQ_MP T... [more]
A0A369KX79_9PROT1.340e-1426.62Alpha/beta hydrolase n=1 Tax=Spirobacillus cienkow... [more]
A0A1T4RA10_9HYPH1.580e-1429.94Lysophospholipase, alpha-beta hydrolase superfamil... [more]
UPI001FD6C9F91.680e-1430.57alpha/beta hydrolase n=1 Tax=Rhizobium sp. SSM4.3 ... [more]
A0A3B0VQU3_9ZZZZ1.820e-1427.05Lysophospholipase L2 n=2 Tax=root TaxID=1 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1071contigS-firma_F_contig1071:375..4351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog536233.CLO_2038
PFAMsHydrolase_4
Max annot lvl186801|Clostridia
KEGG koko:K01048
KEGG Pathwayko00564,map00564
Evalue4.55e-16
EggNOG OGsCOG2267@1|root,COG2267@2|Bacteria,1V2IH@1239|Firmicutes,24BN4@186801|Clostridia,36FPU@31979|Clostridiaceae
EC3.1.1.5
DescriptionAlpha beta
COG categoryI
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-02_001680.1
Exons8
Model size1291
Cds size1245
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.6273897-CDS-S-firma_F_contig1071:374..5791622815611.6273897-CDS-S-firma_F_contig1071:374..579Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 375..579 -
1696949453.0287392-CDS-S-firma_F_contig1071:374..5791696949453.0287392-CDS-S-firma_F_contig1071:374..579Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 375..579 -
1622815611.6399713-CDS-S-firma_F_contig1071:1017..11211622815611.6399713-CDS-S-firma_F_contig1071:1017..1121Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 1018..1121 -
1696949453.045822-CDS-S-firma_F_contig1071:1017..11211696949453.045822-CDS-S-firma_F_contig1071:1017..1121Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 1018..1121 -
1622815611.6568673-CDS-S-firma_F_contig1071:1253..15241622815611.6568673-CDS-S-firma_F_contig1071:1253..1524Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 1254..1524 -
1696949453.0604088-CDS-S-firma_F_contig1071:1253..15241696949453.0604088-CDS-S-firma_F_contig1071:1253..1524Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 1254..1524 -
1622815611.675136-CDS-S-firma_F_contig1071:2357..24531622815611.675136-CDS-S-firma_F_contig1071:2357..2453Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 2358..2453 -
1696949453.0699449-CDS-S-firma_F_contig1071:2357..24531696949453.0699449-CDS-S-firma_F_contig1071:2357..2453Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 2358..2453 -
1622815611.6878202-CDS-S-firma_F_contig1071:2660..27801622815611.6878202-CDS-S-firma_F_contig1071:2660..2780Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 2661..2780 -
1696949453.0802374-CDS-S-firma_F_contig1071:2660..27801696949453.0802374-CDS-S-firma_F_contig1071:2660..2780Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 2661..2780 -
1622815611.704379-CDS-S-firma_F_contig1071:3179..33171622815611.704379-CDS-S-firma_F_contig1071:3179..3317Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 3180..3317 -
1696949453.0895665-CDS-S-firma_F_contig1071:3179..33171696949453.0895665-CDS-S-firma_F_contig1071:3179..3317Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 3180..3317 -
1622815611.7205088-CDS-S-firma_F_contig1071:3714..38861622815611.7205088-CDS-S-firma_F_contig1071:3714..3886Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 3715..3886 -
1696949453.0997536-CDS-S-firma_F_contig1071:3714..38861696949453.0997536-CDS-S-firma_F_contig1071:3714..3886Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 3715..3886 -
1622815611.7305374-CDS-S-firma_F_contig1071:4166..43051622815611.7305374-CDS-S-firma_F_contig1071:4166..4305Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 4167..4305 -
1696949453.108087-CDS-S-firma_F_contig1071:4166..43051696949453.108087-CDS-S-firma_F_contig1071:4166..4305Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1071 4167..4305 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.7408042-UTR-S-firma_F_contig1071:4305..43511622815611.7408042-UTR-S-firma_F_contig1071:4305..4351Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1071 4306..4351 -
1696949453.1166742-UTR-S-firma_F_contig1071:4305..43511696949453.1166742-UTR-S-firma_F_contig1071:4305..4351Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1071 4306..4351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1071.962.1prot_S-firma_F_contig1071.962.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1071 375..4305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1071.962.1

>prot_S-firma_F_contig1071.962.1 ID=prot_S-firma_F_contig1071.962.1|Name=mRNA_S-firma_F_contig1071.962.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=415bp
MGPLRGAIAVAALSIFCDRSSYAFTAFASRTKSAYVRAAAAASTDPVSLS
AGLTAGGANTQQHLHQGLPAFAEDHQLQEALARCEVILRAGEAAGIEQAS
GKTSAVAPLASENVDSSKSSGPLDGLRRFSRDGADGVFMGAAGVPVRYRL
FPKYSPEEEGSKLRPGVVLLTGLMESMVKYGETIAHLNDRGFSVYTYDHH
GQGLSGRLPVPDSADTTVAHITDFDHYVQDLVQFSKVVLPAMVPLHLHRD
ESGSRGGGGEAAIADVVGESSSLPLENGDGDGGPLKLSVIAHSMGGLVAV
KAALEEPLLFEGMVLAAPMLAPNTGKLSNGIVGAVAWVATKLAQGHRSPI
RRPARATMEWSKVTHDRRRLRLWETLRGEVSCVLQRGPSFAWLSQAVRAS
KRGRRRLGDLSVSVL
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mRNA from alignment at S-firma_F_contig1071:375..4351-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1071.962.1 ID=mRNA_S-firma_F_contig1071.962.1|Name=mRNA_S-firma_F_contig1071.962.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3977bp|location=Sequence derived from alignment at S-firma_F_contig1071:375..4351- (Sphaerotrichia firma ET2_F female)
CAAGTCGGGCTTGCTGTGAAGTCTAGTGTCTACGGAAGGTGTGGCTATGG GGCCCTTGCGAGGTGCAATAGCAGTAGCGGCTTTGTCTATTTTCTGCGAT CGCAGCAGCTATGCTTTCACGGCCTTCGCCAGCAGGACGAAATCGGCGTA CGTCAGAGCGGCGGCAGCAGCAAGCACAGATCCCGGTATGGGCGTGAACA ACGATGTGTGCCAAACTTTATGCATCTGTGCCTGCGGCAAGTCTGTTGCA TCTTTTGTGAGATTCAAATGCTGGTTCTTCGGTGCATCATGACGTGAGAT ACCACCCCCCTGCAGCAGTACCTACATGACGGCCCATCCGCTCGCCGTTT ATCACTTTGGATCCAGCCTGGTTGAGTTACTGGAAGGCTCTCCCGCTGAG CAACAAGTGTCTCACGCTATTGCTGCTGCGCTCGGATTAATGCATTCCCG GCCCGCTATGTACAGTATCCCTCTCCGCAGGGCTGACCGCTGGGGGAGCA AACACTCAACAGCACTTGCATCAAGGTTTGCCAGCGTTCGCGGAGGATCA CCAGCTCCAAGAAGCCCTGGCCCGCTGCGAGGTCATTCTTCGTGCCGGCG AAGCCGCTGGAATCGAGCAGGCGTCAGGAAAAACGAGGTTGATGGAAATG AGCTCGTGTCAACTTTCGACTGACTGGCTCGAAACACCCCGTGTGATACT TCCTCCCTAACAAAACTTGGATCGATTGCAGCAGCATGCTTTGGCGAGTG CCTCGCTTTTTGCTTGCTGAAGCAGTCAGTTGAGCGTGGTGATGCATTCT CAGTATTCCTTCAGCTCCCTCTTTCGCTGTCTCACCTACATTCCATACGG CAGCGTATCTTGCCCCCCCTTCCCTGTCACATACCCGCGGAGGGAGCCCG TTCCGGTTGCTGTTGATACACACCCCTATCCCGACAGATCCGTCCAACTA ATGCATGCCTTGATTTTTGTCCCGGGGTATCTTCTCTTATCTCGATGCAC TACCTCCGCCGACATCCCTGCCGAATCAACGCAGCGCTGTCGCTCCATTG GCGTCGGAAAATGTAGACTCGTCGAAGTCGTCTGGCCCGCTCGATGGTCT GCGGCGGTTTTCTCGAGACGGAGCGGACGGCGTTTTCATGGGAGCCGCTG GTGTCCCAGTTCGCTACCGCCTGTGAGCTGGTTGTTTAGTCGCTCGAGCG GTGATGTGCGGTGATCAGATGTGCTTAGATTTTGTTTTTCTCTGTTGGGC GTGTCTCGTCTTTTCGTGTTCCACCGGAGAGGATTACATCAGTTCCTCTC ATATTGGTTGAGACCAAGTATGTCGCACTGGTCAGGAGGACGCTGGCTGA TTAGTAGAGGTCAGGGCGGGCTTTGATTTGAAGATAGCAGCAGAATAAAC AGCAACATCAACGCAACAATGGCAGCTCCCATGTATCTGTTTCTTACCAT GGTTGCCAATGATCTATTGTTGCTACCTTGGCAATATGCCTTGGGGACAT GCCAGCTTGCCCCAGTTGTGCCGCCAAATTGAACTCTTCCTCTTTTCTGT GTATCGATCCGCCCCTTTCAGTTTCCCCAAGTACTCGCCGGAGGAAGAGG GTAGCAAGCTACGACCAGGAGTTGTGCTGCTGACGGGTTTGATGGAGTCA ATGGTCAAGTACGGGGAAACTATCGCTCACCTAAATGACAGGTGCGATTG CATCGCTGCCGGTGTCCTTTGCTTTCGATCGCATCGGGTGCTTCTCACGG TGTGCGGTTTCGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT GTTGTTGTTGTTGTTGTTGTTATTGTTGTTGGTTTCCTTGACGGTGTGTG TGGCTATCACTAACATTGTTTTGTCGATTGTTGATCGTTCTATTTTAGGG GCTTCTCGGTGTACACGTACGACCACCACGGGCAGGGGCTCTCCGGCCGG CTTCCTGTCCCAGACAGTGCAGATACGACCGTCGCTCACATCACGTAAGC CAACGCCAATGGGGGGTGCAGTGCCACTGCTATTCGGTGTGGCTCTCAGC GTGGCTTCGAAACAATTTACGCCAATTCGCCATGAGTTTCCGGAAGCACA AAAATTGCCGTATTTTCCAGAACAGGCTGGCGGTGTTTGTTTGGCGACGT TCGTTCTTTGGTTTCGAAAGGCGACAGTTTAAATACGCATACTTCTATGC ATGTGCACTGTAGCGACAGCAAGGTGTAAAGCACCATTCCAAGTGGTATG ATCTTTGCCAAGGTGCTCCCGTTCCGCGACTCTGCAGTGCTAGCAAAGCG TGGATGTCTCAACAAGCAGTAGGCAGGGACACCGGCTGTGAGAACATCGC TAGTTCCATCGATTCAAACTGCAGAGGTCGGATTTTTCAACAATTCAGTC GTCAGCCGATATTGTTACCAGTTCTTTGCTTCTCTGCTTTCGCACACCCC TCCTTTTTTTCGAGCACGATTTTTGAGAAAGGCAAGCCTCCATTTTCCAA TGGTACCTCCATTTTCCAATGGTACTCGGGTTTCTATTTATTTGGTCCAT GCAGACGGCCCGGCCCTGACGTACCTCTCGGTCTGCTGATGCTAGTGCTG ACGCTGATGCCACCCGCTTGCCCTAGATACAACCACCGGAACAGTGACCA ACGGTGATGATGCACCGTTCTCGCCCGGGTACATGATCTAACGTGCGCCC CCACGCGGCCCGCCTGATCCCCCTTCCCTGAAAATTGCACCTCGTCCGTT TGTTTTCCTCGTCGTGTGCAACGCGCCTTGCTGCAACGGTGGCCGTTAAC CCTCCGTGTATCTTCGATCCCTTTCAGCGATTTCGACCACTACGTGCAGG ACCTGGTACAGTTTTCGAAGGTCGTCTTGCCGGCGATGGTTCCGCTCCAC CTGCATAGAGATGAGAGTGGGAGCCGGGGCGGGGGAGGAGAGGCGGCAAT AGCGGACGTGGTCGGGGAATCTTCTTCTCTCCCTCTGGAGAATGGTGATG GTGATGGCGGTCCGCTGAAGCTTTCAGTGATCGCGCACTCGATGGGCGGG CTGGTGGCGGTGAAGGCTGCTTTGGAGGAGCCGCTTCTCTTCGAAGGGGT GAGATGTACGGAGTATCACGCCTTGTATTTTCACACACGTACCAACAACA TCAGAGACAAGACTTGTGTCAGTGCGGGCACGTAAATATATGAACCTCAG AAAACAGTTGTGCATCGTCGTCACGAACAGATGGTCCTGGCGGCCCCTAT GCTGGCGCCAAACACCGGAAAGCTGTCGAACGGCATTGTGGGAGCCGTGG CATGGGTTGCAACCAAGCTCGCCCAGGGACACAGGTGGGTACTACCTGAA GCTGGCTTTTGTATGCGCAGCAGTTCAAATGCTTTTGACGCGCACCTTAT GCGAGATTAGCACACTCCAGCACTGGTTCGTGAAGATTGTGGACAACTTA CAAAGGAAGGAATCGGAGCCGGATGACTGAGTCCCGTGTGGTGCTGGTCG TCCGGCTGATTGCGTGCGTGGAGGAAATTGATTGGTGCCACAGAGCAAGC TTTCATGGTTTTCAGCGAAGTGGGCTGATATTGGAAATGAATGAAATCAA CGAATATGAGTGCATCATTTCGACCGACCTCCCCACGGCACACCATACGG CACCACCACGTTCACGCTTGCCTGCCAATGGACACGCGAATGTCTCACCC CGTGCTCGCCCGCCCACCCTCCCGTCGGTCTCTTGCAAAATTAAAAACCA CATGTCGCGGAAATGAGCGCAGGAGCCCGATCAGGCGGCCCGCCAGGGCA ACGATGGAGTGGTCGAAGGTAACGCACGACAGGCGGCGTCTACGGCTCTG GGAGACCCTCCGGGGTGAGGTGAGCTGCGTTTTGCAGCGAGGCCCGAGCT TTGCCTGGTTGTCTCAGGCCGTCCGCGCGTCGAAGCGCGGCCGGCGGCGG CTCGGCGATCTGTCGGTGAGTGTTTTG
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Coding sequence (CDS) from alignment at S-firma_F_contig1071:375..4351-

>mRNA_S-firma_F_contig1071.962.1 ID=mRNA_S-firma_F_contig1071.962.1|Name=mRNA_S-firma_F_contig1071.962.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2490bp|location=Sequence derived from alignment at S-firma_F_contig1071:375..4351- (Sphaerotrichia firma ET2_F female)
ATGGGGCCCTTGCGAGGTGCAATAGCAGTAGCGGCTTTGTCTATTTTCTG
CGATCGCAGCAGCTATGCTTTCACGGCCTTCGCCAGCAGGACGAAATCGG
CGTACGTCAGAGCGGCGGCAGCAGCAAGCACAGATCCCGATGGGGCCCTT
GCGAGGTGCAATAGCAGTAGCGGCTTTGTCTATTTTCTGCGATCGCAGCA
GCTATGCTTTCACGGCCTTCGCCAGCAGGACGAAATCGGCGTACGTCAGA
GCGGCGGCAGCAGCAAGCACAGATCCCGTATCCCTCTCCGCAGGGCTGAC
CGCTGGGGGAGCAAACACTCAACAGCACTTGCATCAAGGTTTGCCAGCGT
TCGCGGAGGATCACCAGCTCCAAGAAGCCCTGGCCCGCTGCGAGGTCATT
CTTCGTGCCGGCGAAGCCGCTGGAATCGAGCAGGCGTCAGGAAAAACGAG
TATCCCTCTCCGCAGGGCTGACCGCTGGGGGAGCAAACACTCAACAGCAC
TTGCATCAAGGTTTGCCAGCGTTCGCGGAGGATCACCAGCTCCAAGAAGC
CCTGGCCCGCTGCGAGGTCATTCTTCGTGCCGGCGAAGCCGCTGGAATCG
AGCAGGCGTCAGGAAAAACGAGCGCTGTCGCTCCATTGGCGTCGGAAAAT
GTAGACTCGTCGAAGTCGTCTGGCCCGCTCGATGGTCTGCGGCGGTTTTC
TCGAGACGGAGCGGACGGCGTTTTCATGGGAGCCGCTGGTGTCCCAGTTC
GCTACCGCCTCGCTGTCGCTCCATTGGCGTCGGAAAATGTAGACTCGTCG
AAGTCGTCTGGCCCGCTCGATGGTCTGCGGCGGTTTTCTCGAGACGGAGC
GGACGGCGTTTTCATGGGAGCCGCTGGTGTCCCAGTTCGCTACCGCCTTT
TCCCCAAGTACTCGCCGGAGGAAGAGGGTAGCAAGCTACGACCAGGAGTT
GTGCTGCTGACGGGTTTGATGGAGTCAATGGTCAAGTACGGGGAAACTAT
CGCTCACCTAAATGACAGTTTCCCCAAGTACTCGCCGGAGGAAGAGGGTA
GCAAGCTACGACCAGGAGTTGTGCTGCTGACGGGTTTGATGGAGTCAATG
GTCAAGTACGGGGAAACTATCGCTCACCTAAATGACAGGGGCTTCTCGGT
GTACACGTACGACCACCACGGGCAGGGGCTCTCCGGCCGGCTTCCTGTCC
CAGACAGTGCAGATACGACCGTCGCTCACATCACGGGCTTCTCGGTGTAC
ACGTACGACCACCACGGGCAGGGGCTCTCCGGCCGGCTTCCTGTCCCAGA
CAGTGCAGATACGACCGTCGCTCACATCACCGATTTCGACCACTACGTGC
AGGACCTGGTACAGTTTTCGAAGGTCGTCTTGCCGGCGATGGTTCCGCTC
CACCTGCATAGAGATGAGAGTGGGAGCCGGGGCGGGGGAGGAGAGGCGGC
AATAGCGGACGTGGTCGGGGAATCTTCTTCTCTCCCTCTGGAGAATGGTG
ATGGTGATGGCGGTCCGCTGAAGCTTTCAGTGATCGCGCACTCGATGGGC
GGGCTGGTGGCGGTGAAGGCTGCTTTGGAGGAGCCGCTTCTCTTCGAAGG
GCGATTTCGACCACTACGTGCAGGACCTGGTACAGTTTTCGAAGGTCGTC
TTGCCGGCGATGGTTCCGCTCCACCTGCATAGAGATGAGAGTGGGAGCCG
GGGCGGGGGAGGAGAGGCGGCAATAGCGGACGTGGTCGGGGAATCTTCTT
CTCTCCCTCTGGAGAATGGTGATGGTGATGGCGGTCCGCTGAAGCTTTCA
GTGATCGCGCACTCGATGGGCGGGCTGGTGGCGGTGAAGGCTGCTTTGGA
GGAGCCGCTTCTCTTCGAAGGGATGGTCCTGGCGGCCCCTATGCTGGCGC
CAAACACCGGAAAGCTGTCGAACGGCATTGTGGGAGCCGTGGCATGGGTT
GCAACCAAGCTCGCCCAGGGACACAGATGGTCCTGGCGGCCCCTATGCTG
GCGCCAAACACCGGAAAGCTGTCGAACGGCATTGTGGGAGCCGTGGCATG
GGTTGCAACCAAGCTCGCCCAGGGACACAGGAGCCCGATCAGGCGGCCCG
CCAGGGCAACGATGGAGTGGTCGAAGGTAACGCACGACAGGCGGCGTCTA
CGGCTCTGGGAGACCCTCCGGGGTGAGGTGAGCTGCGTTTTGCAGCGAGG
CCCGAGCTTTGCCTGGTTGTCTCAGGCCGTCCGCGCGTCGAAGCGCGGCC
GGCGGCGGCTCGGCGATCTGTCGGTGAGTGTTTTGGAGCCCGATCAGGCG
GCCCGCCAGGGCAACGATGGAGTGGTCGAAGGTAACGCACGACAGGCGGC
GTCTACGGCTCTGGGAGACCCTCCGGGGTGAGGTGAGCTGCGTTTTGCAG
CGAGGCCCGAGCTTTGCCTGGTTGTCTCAGGCCGTCCGCGCGTCGAAGCG
CGGCCGGCGGCGGCTCGGCGATCTGTCGGTGAGTGTTTTG
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