mRNA_S-firma_F_contig107.948.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig107.948.1 vs. uniprot
Match: D8LE96_ECTSI (Ubiquitin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE96_ECTSI) HSP 1 Score: 509 bits (1312), Expect = 1.510e-160 Identity = 291/415 (70.12%), Postives = 332/415 (80.00%), Query Frame = 1
Query: 1 AFEEQHAPEAAAELMCAWASDSSKLLRPLSRMIVNGVDSTPFADVDSWLLALRAWLEVDDTLQVERYQLVLGNGKQEAEPRLLWLMYSQREKYEKWLFQVLMVLTELMAEHPGIGAYVSKLHSHETYPLADWMTKHLIETY----GTLRGVGPTRVKEMDLLQIKENLSAYDKQYLGQTAEERVLDMTRRARIGPAEGEPGVTRVESSSSNGVQVEMLDVMGDSAMMLGAAGA----------VKRFWRVTNHRMDSVNFTFKIDPTP----TMYSTRRPNFHLPMGREVKRRLEPQQTVGITEVDKLDLTREFQPHPFKWVFEAGTTPPPA------APXXXXXXXXXXXXXXXXX--------LSASDLLEQQAQMDGDLGEVARVALALEREEARELEAAAVAAAQKADEDE 1149
AFEE HAPEAAAELMCAWA+D+SKLLRPLSR+IV GVDSTPFADVDSWLLALRAWLEVDDTL+VERYQ+VLG GKQE EP+LL LM Q+EKY+KWLF+VLMV++ELMAE+ GIGA+VSKL SHE P ADWMTKHL++TY L GVGP RVKEMDL+QIKENLSAY+K Y G TAEER++DMTRRARIGPAEGEPGVTRVESS+SNGVQVEMLD + MMLGA G +KRFWRVTNHRMDSV FTFKI+PTP T+Y +RRPN+H+P GR+V L+P++T GI EVDKLDLTREFQPHPF WVFEA P A APXXXXXXXXXXXXX L+ASDLLE+QAQ++GDLGE ARVAL LE+EEA E +AAA+ A++A+E E
Sbjct: 3462 AFEEHHAPEAAAELMCAWAADASKLLRPLSRLIVQGVDSTPFADVDSWLLALRAWLEVDDTLKVERYQMVLGTGKQEVEPKLLLLMMLQQEKYDKWLFRVLMVVSELMAENAGIGAHVSKLRSHEMLPWADWMTKHLMDTYDAYGSALGGVGPLRVKEMDLIQIKENLSAYEKAYFGHTAEERLVDMTRRARIGPAEGEPGVTRVESSTSNGVQVEMLDATDTAMMMLGAGGGGHMTMAGGFPLKRFWRVTNHRMDSVTFTFKIEPTPSRLDTVYPSRRPNYHVPAGRDVTLLLKPRETAGIMEVDKLDLTREFQPHPFNWVFEALPETPTATEGAATAPXXXXXXXXXXXXXGEAVPTTVLPTALTASDLLEKQAQLEGDLGEAARVALKLEQEEAAEAQAAAIXXAKRAEEHE 3876 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig107.948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig107.948.1 >prot_S-firma_F_contig107.948.1 ID=prot_S-firma_F_contig107.948.1|Name=mRNA_S-firma_F_contig107.948.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=389bp AFEEQHAPEAAAELMCAWASDSSKLLRPLSRMIVNGVDSTPFADVDSWLLback to top mRNA from alignment at S-firma_F_contig107:51544..56773- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig107.948.1 ID=mRNA_S-firma_F_contig107.948.1|Name=mRNA_S-firma_F_contig107.948.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5230bp|location=Sequence derived from alignment at S-firma_F_contig107:51544..56773- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig107:51544..56773- >mRNA_S-firma_F_contig107.948.1 ID=mRNA_S-firma_F_contig107.948.1|Name=mRNA_S-firma_F_contig107.948.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2334bp|location=Sequence derived from alignment at S-firma_F_contig107:51544..56773- (Sphaerotrichia firma ET2_F female)back to top |