mRNA_S-firma_F_contig10699.939.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10699.939.1
Unique NamemRNA_S-firma_F_contig10699.939.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10699.939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10699contigS-firma_F_contig10699:1367..3693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2212
Cds size2208
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.2248042-CDS-S-firma_F_contig10699:1366..23151622815609.2248042-CDS-S-firma_F_contig10699:1366..2315Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10699 1367..2315 +
1696949451.3894389-CDS-S-firma_F_contig10699:1366..23151696949451.3894389-CDS-S-firma_F_contig10699:1366..2315Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10699 1367..2315 +
1622815609.2414005-CDS-S-firma_F_contig10699:2432..36911622815609.2414005-CDS-S-firma_F_contig10699:2432..3691Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10699 2433..3691 +
1696949451.398612-CDS-S-firma_F_contig10699:2432..36911696949451.398612-CDS-S-firma_F_contig10699:2432..3691Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10699 2433..3691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10699.939.1prot_S-firma_F_contig10699.939.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10699 1367..3691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10699.939.1

>prot_S-firma_F_contig10699.939.1 ID=prot_S-firma_F_contig10699.939.1|Name=mRNA_S-firma_F_contig10699.939.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=736bp
QARAHEREALRLLHVWDRGRGQNQTKVRPPWVHQAADYDVEGTKDGRVLR
WMCEGEGMMNVSSKQRCAHPGCTKWPSYRVEGSKTKAKFCAPHAEEGMVS
VVNNKRCAQPGCNKHPSYGVEGSRVKRFCAPHAQEGMVSVINNKRCAQPG
CNKHPSYGVGGSKTAEFCALHAREGMVSVVSRKRCAHPGCTKHRSYGVEG
SKTAEFCAPHAEEGMVRVTHKRCAHPGCSKHPSYGVEGGKTVEFCALHAR
EGMVSVVKKRCAHPGCTKHPSYGVEGSKTAEFCAPHAEEGMMSVVSNNKK
RCAHPGCSKHPSYGVEGSKTAEFCAPHAREGMVSVVSRKRCAHPGCSKHP
SYGVEGSKTVEFCALHARDGMVSVVSRRRCAHPGCNKHPSYGVEGGKTAE
FCAPHAEEGMVSVVKKRCAHPGCNKHPSYGVEGGETAEFCAQHAREGMVS
VVGSKRCAHPGCNKHPSYGVEGSKAAEFCAPHAREGMVSVFSKKRCAHPD
CNRHPSYGVEGSKTAKFCAGHAEDGMVNVVSKRCTHPVGSKQPAYGVEGR
ICAPHAKKGKFVPASNSSNNSRGGGDVSRHKASALGFNVDGVATGTKRMR
RAPVPAQADAFSDSTRRSKVAEKEKDETLLLATSAAHEEVEREILAPEGE
LSSGEYPAVVKMEGDMAASALSSAVAAVRYVQNLAFSTLSRKLVSSDVSC
RLVCGEVDRTAPKPGYVHESGNAHNRLILSAEKFQI
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mRNA from alignment at S-firma_F_contig10699:1367..3693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10699.939.1 ID=mRNA_S-firma_F_contig10699.939.1|Name=mRNA_S-firma_F_contig10699.939.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2327bp|location=Sequence derived from alignment at S-firma_F_contig10699:1367..3693+ (Sphaerotrichia firma ET2_F female)
CAAGCACGAGCGCACGAGCGAGAGGCTCTTAGGCTGCTCCACGTTTGGGA
CCGTGGACGTGGTCAGAATCAGACCAAGGTGCGGCCACCCTGGGTGCACC
AAGCTGCCGACTACGACGTCGAAGGGACCAAAGACGGCCGAGTTCTGCGC
TGGATGTGCGAGGGAGAGGGCATGATGAACGTTAGCAGCAAGCAGAGGTG
TGCCCACCCTGGTTGCACAAAATGGCCGTCGTACCGTGTAGAAGGTAGCA
AGACGAAGGCTAAGTTCTGTGCTCCACACGCGGAGGAGGGAATGGTGAGC
GTCGTCAACAACAAGAGGTGTGCCCAACCTGGTTGCAACAAACACCCATC
GTACGGTGTGGAAGGAAGCCGCGTCAAGCGTTTTTGTGCTCCACACGCAC
AGGAGGGAATGGTGAGTGTCATCAACAACAAGAGGTGTGCCCAACCTGGT
TGCAACAAACACCCATCGTACGGTGTGGGAGGTAGCAAGACGGCTGAGTT
TTGTGCTCTACACGCAAGGGAGGGGATGGTGAGTGTCGTCAGCAGGAAGA
GGTGTGCCCACCCTGGTTGCACCAAACACCGATCGTACGGTGTGGAAGGT
AGCAAGACGGCTGAGTTTTGTGCTCCACACGCGGAGGAGGGCATGGTGAG
AGTCACCCACAAGAGGTGTGCCCACCCTGGTTGCAGCAAACACCCATCGT
ACGGTGTGGAAGGTGGCAAGACGGTTGAGTTTTGTGCTCTACACGCGAGG
GAGGGGATGGTGAGTGTCGTCAAGAAGAGGTGTGCCCACCCTGGTTGCAC
CAAACACCCATCGTACGGTGTGGAAGGTAGCAAGACGGCTGAGTTCTGTG
CTCCACACGCGGAGGAGGGGATGATGAGCGTCGTCAGCAACAACAAGAAG
AGGTGTGCCCATCCTGGTTGCAGCAAACACCCATCGTACGGTGTGGAAGG
TAGCGAGACGGCTGAGTTCTGTGCTCCACACGCGGAGGAGGGGATGATGA
GCGTCGTCGACAGCAAGAAGTGTGCCCATCCTGGTTGCAGCAAACACCCA
TCGTACGGTGTGGAAGGTAGCAAGACGGCTGAGTTTTGTGCTCCACACGC
GAGGGAGGGGATGGTGAGTGTCGTCAGCAGGAAGAGGTGTGCCCACCCTG
GTTGCAGCAAACACCCATCGTACGGTGTGGAAGGTAGCAAGACGGTTGAG
TTTTGTGCTTTACACGCGAGGGATGGGATGGTGAGTGTCGTCAGCAGGAG
GAGGTGCGCCCATCCTGGTTGCAACAAACACCCATCGTACGGTGTGGAAG
GTGGCAAGACGGCTGAGTTCTGTGCTCCACACGCGGAGGAGGGGATGGTG
AGTGTCGTCAAGAAGAGGTGCGCCCATCCTGGTTGCAACAAACACCCATC
GTACGGTGTGGAAGGTGGCGAGACGGCCGAGTTCTGCGCTCAACACGCGC
GGGAGGGAATGGTGAGCGTCGTCGGCAGCAAGAGGTGTGCCCACCCTGGT
TGCAACAAACACCCATCGTACGGTGTGGAAGGTAGCAAGGCGGCTGAGTT
TTGTGCTCCACACGCGAGGGAGGGGATGGTAAGTGTCTTCAGCAAGAAGA
GGTGTGCCCACCCTGATTGCAACAGACACCCATCGTATGGTGTGGAAGGT
AGCAAGACGGCTAAGTTCTGCGCTGGACATGCGGAGGATGGTATGGTGAA
TGTAGTCAGCAAGAGGTGTACGCACCCTGTTGGCAGCAAGCAACCGGCGT
ACGGCGTAGAAGGCAGGATCTGCGCTCCACACGCGAAAAAGGGAAAATTT
GTCCCGGCCTCGAATAGCAGCAACAACAGCAGAGGCGGCGGCGATGTGAG
CAGGCACAAAGCGTCAGCCTTAGGTTTCAACGTGGATGGTGTTGCAACGG
GTACAAAGCGCATGCGCCGCGCCCCCGTGCCTGCTCAAGCGGACGCTTTC
TCAGATAGCACGCGCCGCAGCAAGGTCGCCGAAAAAGAAAAGGACGAGAC
ACTGCTGTTGGCAACGAGTGCGGCCCATGAAGAAGTCGAGCGTGAAATAC
TCGCCCCCGAGGGGGAGTTGTCTTCGGGGGAGTATCCGGCTGTGGTGAAA
ATGGAAGGGGACATGGCGGCGTCCGCCTTGTCGAGCGCGGTGGCAGCTGT
GAGGTACGTTCAAAACCTTGCGTTTTCCACCCTAAGCCGAAAGTTAGTAT
CAAGTGATGTTTCTTGTCGACTGGTCTGTGGAGAAGTAGATAGAACAGCG
CCGAAGCCCGGGTATGTACATGAAAGCGGCAACGCTCACAACCGCCTAAT
TTTGTCAGCTGAGAAGTTTCAGATCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10699:1367..3693+

>mRNA_S-firma_F_contig10699.939.1 ID=mRNA_S-firma_F_contig10699.939.1|Name=mRNA_S-firma_F_contig10699.939.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=4416bp|location=Sequence derived from alignment at S-firma_F_contig10699:1367..3693+ (Sphaerotrichia firma ET2_F female)
CAAGCACGAGCGCACGAGCGAGAGGCTCTTAGGCTGCTCCACGTTTGGGA
CCGTGGACGTGGTCAGAATCAGACCAAGGTGCGGCCACCCTGGGTGCACC
AAGCTGCCGACTACGACGTCGAAGGGACCAAAGACGGCCGAGTTCTGCGC
TGGATGTGCGAGGGAGAGGGCATGATGAACGTTAGCAGCAAGCAGAGGTG
TGCCCACCCTGGTTGCACAAAATGGCCGTCGTACCGTGTAGAAGGTAGCA
AGACGAAGGCTAAGTTCTGTGCTCCACACGCGGAGGAGGGAATGGTGAGC
GTCGTCAACAACAAGAGGTGTGCCCAACCTGGTTGCAACAAACACCCATC
GTACGGTGTGGAAGGAAGCCGCGTCAAGCGTTTTTGTGCTCCACACGCAC
AGGAGGGAATGGTGAGTGTCATCAACAACAAGAGGTGTGCCCAACCTGGT
TGCAACAAACACCCATCGTACGGTGTGGGAGGTAGCAAGACGGCTGAGTT
TTGTGCTCTACACGCAAGGGAGGGGATGGTGAGTGTCGTCAGCAGGAAGA
GGTGTGCCCACCCTGGTTGCACCAAACACCGATCGTACGGTGTGGAAGGT
AGCAAGACGGCTGAGTTTTGTGCTCCACACGCGGAGGAGGGCATGGTGAG
AGTCACCCACAAGAGGTGTGCCCACCCTGGTTGCAGCAAACACCCATCGT
ACGGTGTGGAAGGTGGCAAGACGGTTGAGTTTTGTGCTCTACACGCGAGG
GAGGGGATGGTGAGTGTCGTCAAGAAGAGGTGTGCCCACCCTGGTTGCAC
CAAACACCCATCGTACGGTGTGGAAGGTAGCAAGACGGCTGAGTTCTGTG
CTCCACACGCGGAGGAGGGGATGATGAGCGTCGTCAGCAACAACAAGAAG
AGGTGTGCCCATCCTGGTTGCAGCAAACACCCATCGTACGGTGTGGAAGC
AAGCACGAGCGCACGAGCGAGAGGCTCTTAGGCTGCTCCACGTTTGGGAC
CGTGGACGTGGTCAGAATCAGACCAAGGTGCGGCCACCCTGGGTGCACCA
AGCTGCCGACTACGACGTCGAAGGGACCAAAGACGGCCGAGTTCTGCGCT
GGATGTGCGAGGGAGAGGGCATGATGAACGTTAGCAGCAAGCAGAGGTGT
GCCCACCCTGGTTGCACAAAATGGCCGTCGTACCGTGTAGAAGGTAGCAA
GACGAAGGCTAAGTTCTGTGCTCCACACGCGGAGGAGGGAATGGTGAGCG
TCGTCAACAACAAGAGGTGTGCCCAACCTGGTTGCAACAAACACCCATCG
TACGGTGTGGAAGGAAGCCGCGTCAAGCGTTTTTGTGCTCCACACGCACA
GGAGGGAATGGTGAGTGTCATCAACAACAAGAGGTGTGCCCAACCTGGTT
GCAACAAACACCCATCGTACGGTGTGGGAGGTAGCAAGACGGCTGAGTTT
TGTGCTCTACACGCAAGGGAGGGGATGGTGAGTGTCGTCAGCAGGAAGAG
GTGTGCCCACCCTGGTTGCACCAAACACCGATCGTACGGTGTGGAAGGTA
GCAAGACGGCTGAGTTTTGTGCTCCACACGCGGAGGAGGGCATGGTGAGA
GTCACCCACAAGAGGTGTGCCCACCCTGGTTGCAGCAAACACCCATCGTA
CGGTGTGGAAGGTGGCAAGACGGTTGAGTTTTGTGCTCTACACGCGAGGG
AGGGGATGGTGAGTGTCGTCAAGAAGAGGTGTGCCCACCCTGGTTGCACC
AAACACCCATCGTACGGTGTGGAAGGTAGCAAGACGGCTGAGTTCTGTGC
TCCACACGCGGAGGAGGGGATGATGAGCGTCGTCAGCAACAACAAGAAGA
GGTGTGCCCATCCTGGTTGCAGCAAACACCCATCGTACGGTGTGGAAGGT
AGCAAGACGGCTGAGTTTTGTGCTCCACACGCGAGGGAGGGGATGGTGAG
TGTCGTCAGCAGGAAGAGGTGTGCCCACCCTGGTTGCAGCAAACACCCAT
CGTACGGTGTGGAAGGTAGCAAGACGGTTGAGTTTTGTGCTTTACACGCG
AGGGATGGGATGGTGAGTGTCGTCAGCAGGAGGAGGTGCGCCCATCCTGG
TTGCAACAAACACCCATCGTACGGTGTGGAAGGTGGCAAGACGGCTGAGT
TCTGTGCTCCACACGCGGAGGAGGGGATGGTGAGTGTCGTCAAGAAGAGG
TGCGCCCATCCTGGTTGCAACAAACACCCATCGTACGGTGTGGAAGGTGG
CGAGACGGCCGAGTTCTGCGCTCAACACGCGCGGGAGGGAATGGTGAGCG
TCGTCGGCAGCAAGAGGTGTGCCCACCCTGGTTGCAACAAACACCCATCG
TACGGTGTGGAAGGTAGCAAGGCGGCTGAGTTTTGTGCTCCACACGCGAG
GGAGGGGATGGTAAGTGTCTTCAGCAAGAAGAGGTGTGCCCACCCTGATT
GCAACAGACACCCATCGTATGGTGTGGAAGGTAGCAAGACGGCTAAGTTC
TGCGCTGGACATGCGGAGGATGGTATGGTGAATGTAGTCAGCAAGAGGTG
TACGCACCCTGTTGGCAGCAAGCAACCGGCGTACGGCGTAGAAGGCAGGA
TCTGCGCTCCACACGCGAAAAAGGGAAAATTTGTCCCGGCCTCGAATAGC
AGCAACAACAGCAGAGGCGGCGGCGATGTGAGCAGGCACAAAGCGTCAGC
CTTAGGTTTCAACGTGGATGGTGTTGCAACGGGTACAAAGCGCATGCGCC
GCGCCCCCGTGCCTGCTCAAGCGGACGCTTTCTCAGATAGCACGCGCCGC
AGCAAGGTCGCCGAAAAAGAAAAGGACGAGACACTGCTGTTGGCAACGAG
TGCGGCCCATGAAGAAGTCGAGCGTGAAATACTCGCCCCCGAGGGGGAGT
TGTCTTCGGGGGAGTATCCGGCTGTGGTGAAAATGGAAGGGGACATGGCG
GCGTCCGCCTTGTCGAGCGCGGTGGCAGCTGTGAGGTACGTTCAAAACCT
TGCGTTTTCCACCCTAAGCCGAAAGTTAGTATCAAGTGATGTTTCTTGTC
GACTGGTCTGTGGAGAAGTAGATAGAACAGCGCCGAAGCCCGGGTATGTA
CATGAAAGCGGCAACGCTCACAACCGCCTAATTTTGTCAGCTGAGAAGTT
TCAGATCGTAGCAAGACGGCTGAGTTTTGTGCTCCACACGCGAGGGAGGG
GATGGTGAGTGTCGTCAGCAGGAAGAGGTGTGCCCACCCTGGTTGCAGCA
AACACCCATCGTACGGTGTGGAAGGTAGCAAGACGGTTGAGTTTTGTGCT
TTACACGCGAGGGATGGGATGGTGAGTGTCGTCAGCAGGAGGAGGTGCGC
CCATCCTGGTTGCAACAAACACCCATCGTACGGTGTGGAAGGTGGCAAGA
CGGCTGAGTTCTGTGCTCCACACGCGGAGGAGGGGATGGTGAGTGTCGTC
AAGAAGAGGTGCGCCCATCCTGGTTGCAACAAACACCCATCGTACGGTGT
GGAAGGTGGCGAGACGGCCGAGTTCTGCGCTCAACACGCGCGGGAGGGAA
TGGTGAGCGTCGTCGGCAGCAAGAGGTGTGCCCACCCTGGTTGCAACAAA
CACCCATCGTACGGTGTGGAAGGTAGCAAGGCGGCTGAGTTTTGTGCTCC
ACACGCGAGGGAGGGGATGGTAAGTGTCTTCAGCAAGAAGAGGTGTGCCC
ACCCTGATTGCAACAGACACCCATCGTATGGTGTGGAAGGTAGCAAGACG
GCTAAGTTCTGCGCTGGACATGCGGAGGATGGTATGGTGAATGTAGTCAG
CAAGAGGTGTACGCACCCTGTTGGCAGCAAGCAACCGGCGTACGGCGTAG
AAGGCAGGATCTGCGCTCCACACGCGAAAAAGGGAAAATTTGTCCCGGCC
TCGAATAGCAGCAACAACAGCAGAGGCGGCGGCGATGTGAGCAGGCACAA
AGCGTCAGCCTTAGGTTTCAACGTGGATGGTGTTGCAACGGGTACAAAGC
GCATGCGCCGCGCCCCCGTGCCTGCTCAAGCGGACGCTTTCTCAGATAGC
ACGCGCCGCAGCAAGGTCGCCGAAAAAGAAAAGGACGAGACACTGCTGTT
GGCAACGAGTGCGGCCCATGAAGAAGTCGAGCGTGAAATACTCGCCCCCG
AGGGGGAGTTGTCTTCGGGGGAGTATCCGGCTGTGGTGAAAATGGAAGGG
GACATGGCGGCGTCCGCCTTGTCGAGCGCGGTGGCAGCTGTGAGGTACGT
TCAAAACCTTGCGTTTTCCACCCTAAGCCGAAAGTTAGTATCAAGTGATG
TTTCTTGTCGACTGGTCTGTGGAGAAGTAGATAGAACAGCGCCGAAGCCC
GGGTATGTACATGAAAGCGGCAACGCTCACAACCGCCTAATTTTGTCAGC
TGAGAAGTTTCAGATC
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