mRNA_S-firma_F_contig10693.936.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10693.936.1
Unique NamemRNA_S-firma_F_contig10693.936.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10693.936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10693contigS-firma_F_contig10693:3460..3906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size449
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.0850666-UTR-S-firma_F_contig10693:3459..35671622815609.0850666-UTR-S-firma_F_contig10693:3459..3567Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10693 3460..3567 +
1696949451.3125103-UTR-S-firma_F_contig10693:3459..35671696949451.3125103-UTR-S-firma_F_contig10693:3459..3567Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10693 3460..3567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.0980508-CDS-S-firma_F_contig10693:3567..39061622815609.0980508-CDS-S-firma_F_contig10693:3567..3906Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10693 3568..3906 +
1696949451.3257499-CDS-S-firma_F_contig10693:3567..39061696949451.3257499-CDS-S-firma_F_contig10693:3567..3906Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10693 3568..3906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10693.936.1prot_S-firma_F_contig10693.936.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10693 3568..3906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10693.936.1

>prot_S-firma_F_contig10693.936.1 ID=prot_S-firma_F_contig10693.936.1|Name=mRNA_S-firma_F_contig10693.936.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=113bp
MPLGGVFSTGPELVGCNRLPCRGIYCFFLTHTPALPTTHQPALLSISRSF
SHALDNLPPALSPLRSKFLQAHNTISRCKQRTMRALVTASLLAFSAWSSA
SVAAAIVDAGAVT
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mRNA from alignment at S-firma_F_contig10693:3460..3906+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10693.936.1 ID=mRNA_S-firma_F_contig10693.936.1|Name=mRNA_S-firma_F_contig10693.936.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=447bp|location=Sequence derived from alignment at S-firma_F_contig10693:3460..3906+ (Sphaerotrichia firma ET2_F female)
GTCTGCACTACTTCCAGGACACCAGGAAGGCACGGGATATTCTCTATTAT
GGTTGCCTAGACGACGTTGTACAAAGAGCAGATTCCGATTCAGCTAGACT
GTATTTTCATGCCACTGGGAGGAGTTTTCTCGACTGGACCTGAACTTGTT
GGCTGCAACCGGCTACCTTGCCGGGGTATTTATTGTTTCTTCCTCACACA
CACGCCCGCCCTTCCCACAACACACCAGCCAGCCCTTCTCTCTATCTCCC
GATCCTTCTCCCACGCTCTTGACAACCTGCCTCCTGCCCTCTCTCCGCTG
CGATCAAAGTTCTTGCAGGCACACAATACAATCAGCCGCTGCAAGCAACG
CACGATGCGTGCTCTGGTGACCGCCTCTCTCTTGGCCTTCTCTGCTTGGT
CGTCTGCTTCCGTAGCTGCGGCTATTGTGGATGCCGGAGCGGTTACT
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Coding sequence (CDS) from alignment at S-firma_F_contig10693:3460..3906+

>mRNA_S-firma_F_contig10693.936.1 ID=mRNA_S-firma_F_contig10693.936.1|Name=mRNA_S-firma_F_contig10693.936.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=678bp|location=Sequence derived from alignment at S-firma_F_contig10693:3460..3906+ (Sphaerotrichia firma ET2_F female)
ATGCCACTGGGAGGAGTTTTCTCGACTGGACCTGAACTTGTTGGCTGCAA
CCGGCTACCTTGCCGGGGTATTTATTGTTTCTTCCTCACACACACGCCCG
CCCTTCCCACAACACACCAGCCAGCCCTTCTCTCTATCTCCCGATCCTTC
TCCCACGCTCTTGACAACCTGCCTCCTGCCCTCTCTCCGCTGCGATCAAA
GTTCTTGCAGGCACACAATACAATCAGCCGCTGCAAGCAACGCACGATGC
GTGCTCTGGTGACCGCCTCTCTCTTGGCCTTCTCTGCTTGGTCGTCTGCT
TCCGTAGCTGCGGCTATTGTGGATGCCGGAGCGGTTACTATGCCACTGGG
AGGAGTTTTCTCGACTGGACCTGAACTTGTTGGCTGCAACCGGCTACCTT
GCCGGGGTATTTATTGTTTCTTCCTCACACACACGCCCGCCCTTCCCACA
ACACACCAGCCAGCCCTTCTCTCTATCTCCCGATCCTTCTCCCACGCTCT
TGACAACCTGCCTCCTGCCCTCTCTCCGCTGCGATCAAAGTTCTTGCAGG
CACACAATACAATCAGCCGCTGCAAGCAACGCACGATGCGTGCTCTGGTG
ACCGCCTCTCTCTTGGCCTTCTCTGCTTGGTCGTCTGCTTCCGTAGCTGC
GGCTATTGTGGATGCCGGAGCGGTTACT
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