mRNA_S-firma_F_contig1069.933.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1069.933.1
Unique NamemRNA_S-firma_F_contig1069.933.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1069.933.1 vs. uniprot
Match: D8LDM2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDM2_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 1.770e-92
Identity = 191/321 (59.50%), Postives = 214/321 (66.67%), Query Frame = 1 
Query:  184 RSAPTAVSLLMAAVGGGNKKRPWESFATDVTKKAVVAATVAAVAFSAPGGALAARSGGRISGGSFSHSYTTSSYSSGPSSQY---YLRGRGRISD-----------------------GTDVVLFCGA--------LGVAYGLDRGVEELAKRVRTPFGNLDDSPPSSLGAGVDVIKLQFAINCCDRGSNSILGVLEDVSARGDTESRLGLAEVVSEISLALERRSSDWVALASELEHFNNRNTERAEATFSQYSVQLRAKIERETNAVVGGKNVSVPRSEEGSPVSPGRPTVAVVCLVMALRGDALKRLGLDKSVNSVSG 1044
            RSA  A S L  ++ G   + PW++F TDV KK  VAATVAAVAFS PG ALAARSGGR+ G SFS    + S  S PS  Y   Y  G   +                         G   V F G         L V  G+  GV +L K   T FGNLDDSPPSSLG GVDV+KLQ AINC DR SNSILGVLEDVS+RGDTESR GLAEVVSE+SLAL RRS DWVA ASELEHFNNRN ERAEATFSQYS+QLR KIERETNAV+GGKN+S  RS  G  +  G PTVAVV LV+ALRGDA+KRLGLD+SV+++SG
Sbjct:   43 RSASAATSSLPLSMAG---EAPWKAFTTDVAKKVAVAATVAAVAFSTPGEALAARSGGRMGGRSFSSPSRSYSAPSAPSRSYAPSYGGGSTTVVPXXXXXXXXXXXXXXXSPFGFSPFGRPGVSFYGGGFGVNPVDLLVLGGVAYGVSQLVKGGGTSFGNLDDSPPSSLGEGVDVLKLQVAINCRDRSSNSILGVLEDVSSRGDTESRSGLAEVVSEVSLALARRSLDWVASASELEHFNNRNVERAEATFSQYSIQLRTKIERETNAVIGGKNISAERSGGGG-IGSGGPTVAVVSLVVALRGDAMKRLGLDRSVSNISG 359
[Close]
BLAST of mRNA_S-firma_F_contig1069.933.1 vs. uniprot
Match: A0A835ZEJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ7_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.110e-32
Identity = 77/159 (48.43%), Postives = 107/159 (67.30%), Query Frame = 1 
Query:  568 DSPPSSLGAGVDVIKLQFAINCCDRGSNSILGVLEDVSARGDTESRLGLAEVVSEISLALERRSSDWVALASELEHFNNRNTERAEATFSQYSVQLRAKIERETNAVVGGKNVSVPRSEEG-SPVSPGRPTVAVVCLVMALRGDALKRLGLDKSVNSVS 1041
            D    SLG GV V+KLQ A+N  DR S  IL  L+ ++ R +T SR GL+  VSE+ LAL RR  DW+A AS+ E+F  R+ ERAEA F+ Y++  R K+ERET +  GG+++S  R  +G  P   G+PT AVV +V+AL+G++LKR  L++S+NS S
Sbjct:  189 DVEGGSLGRGVGVVKLQVALNASDRSSRGILAQLKSIAERAETSSRGGLSTAVSEVCLALVRRQPDWIASASQYEYFAPRSAERAEAVFNTYAIAERTKVERETVSRFGGEDLSDSRRSDGVRPEDLGKPTQAVVTIVLALKGESLKRFQLERSINSAS 347
[Close]
BLAST of mRNA_S-firma_F_contig1069.933.1 vs. uniprot
Match: A0A7S2XX02_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX02_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.170e-25
Identity = 101/289 (34.95%), Postives = 147/289 (50.87%), Query Frame = 1 
Query:  259 FATDVTKKAVVAAT-VAAVAFSAPGGALAARSGGRISGGSFSHSYTTSSYSSGPSSQYYLRGRGRIS--------------DGTDVVLFCGALGVAY----------GLDRGVEELAKRVRTP--FGNLDDSP-PSSLGAGVDVIKLQFAINCCDRGSNSILGVLEDVSARGDTESRLGLAEVVSEISLALERRSSDWVALASELEHFNNRNTERAEATFSQYSVQLRAKIERETNAVVGGKNVSVPRSEEGSPVSPGRPTVAVVCLVMALRGDALKRLGLDKSVNSVS 1041
            F++D  K   ++A  +A   F  P   +AA+SGGR+ G SFS S  T  Y+S P  Q Y    G +                G    +     GV+Y           +  GV  +   + +   +G LDD   PSSLG GV V+K Q A+N  DR + S+L  L  VS    T SR GL+ VVSE++L L RRS++W A+ASEL++F  R+  +AE+ F + S   R+K+++E+  V G         + G+    G  T+AVV + +ALRGD+LK       VN++S
Sbjct:   54 FSSDGFKATALSALLIAGSLFVTPQETIAAQSGGRVGGRSFSSS-PTRQYASPPVQQQYAPSAGIVPVPXXXSXXXXXXXXXGFXXXMSPFGFGVSYFNPINAIVLGAVAYGVISIIGGLTSSGQWGTLDDEEGPSSLGQGVSVLKFQLALNVKDRTAMSLLNDLRVVSESSSTSSRFGLSNVVSEVALTLLRRSAEWEAVASELQYFGPRDASKAESAFGRISTGERSKVQQESGQVDGMSVGGFANQKVGA--GDGDATLAVVTIALALRGDSLKSFD---GVNNIS 336
[Close]
BLAST of mRNA_S-firma_F_contig1069.933.1 vs. uniprot
Match: L1I7G9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I7G9_GUITC)

HSP 1 Score: 102 bits (255), Expect = 1.770e-20
Identity = 58/138 (42.03%), Postives = 89/138 (64.49%), Query Frame = 1 
Query:  589 GAGVDVIKLQFAINCCDRGSNSILGVLEDVSARGDTESRLGLAEVVSEISLALERRSSDWVALASELEHFNNRNTERAEATFSQYSVQLRAKIERETNAVVGGKNVSVPRSEEGSPVSPGRPTVAVVCLVMALRGDAL 1002
            G  ++V+KLQ A++C  RG +S+LG +  ++   DTE+  GLA++VS+++LAL R+ SDWV+ +  LE    R+ +  E+ F Q+S+Q RAKIERET   V G + S  RS EG     G+ T AV+ +++A+ G  L
Sbjct:   73 GPEINVVKLQVAVHCDTRGPSSLLGTISRIADEADTETEEGLADLVSDVALALLRKESDWVSAS--LETKVTRDEDEGESLFGQFSLQERAKIERETFNKVSGIDKSESRSSEGKLDDIGKATEAVITMILAIEGKEL 208
[Close]
BLAST of mRNA_S-firma_F_contig1069.933.1 vs. uniprot
Match: A0A6U4YZC0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4YZC0_HEMAN)

HSP 1 Score: 102 bits (253), Expect = 1.360e-19
Identity = 94/274 (34.31%), Postives = 136/274 (49.64%), Query Frame = 1 
Query:  304 AAVAFSAPGGALAARSGGRISGGSFSHSYTTSSYSSGPSS----QYYLRGRGRISDGTDVVLFC---------------GA---LGVAYGLDRGVEELAKRVRTPFGNLDDSPPSSLGAGVDVIKLQFAINCCDRGSNSILGVLEDVSARGDTESRLGLAEVVSEISLALERRSSDWVALASELEHFNNRNTERAEATFSQYSVQLRAKIERETNAVVGGKNVSVPRSEEGSPVSPGRPTVAVVCLVMALRG----DALKRLGLDKSVNSVSGD 1047
            A++A + P  A AA+SGGRI GGSF  +  ++  S+G SS    QY   G   I+    V                   GA    G ++G    V  +     + FG        +L     V K+Q A NC DRG NS+LGV+  ++   DT+    LA +VS+++LAL R+  DW++  +++E  +       EATFSQ S++ RAKIERET   V G + S  R  EG     G+ T AV+ L++ L+G    +A     L KS++SV  D
Sbjct:   85 ASLALAFPTDAFAAKSGGRIGGGSFKRTQMSAPRSTGASSYGGAQYGGGGTTIIAPSPRVGXXXXXXXXXXXVYSSYGYGAPMLFGPSFGSLVLVGSMLFMATSLFGGWGQDEEEALS----VCKVQVATNCPDRGPNSVLGVIARLADEVDTDDEDSLASMVSDVALALLRKEGDWIS--AKIESVDXXXXXXXEATFSQMSLKERAKIERETINRVRGNDKSDAREGEGKLEDIGKATSAVITLILCLQGRKIPEANDMASLRKSLSSVGSD 352
[Close]
BLAST of mRNA_S-firma_F_contig1069.933.1 vs. uniprot
Match: A0A7S0ECJ8_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0ECJ8_9CRYP)

HSP 1 Score: 93.6 bits (231), Expect = 9.620e-17
Identity = 86/288 (29.86%), Postives = 134/288 (46.53%), Query Frame = 1 
Query:  268 DVTKKAVVAATVAAVAFSAPGGALAARSGGRISGGSFSHSYT--TSSYSSGPSSQYYLRGRGRISDG--------------------------------TDVVLFCGALGVAYGLDRGVEELAKRVRTPFGNLDDSPPSSLGAGVDVIKLQFAINCCDRGSNSILGVLEDVSARGDTESRLGLAEVVSEISLALERRSSDWVALASELEHFNNRNTERAEATFSQYSVQLRAKIERETNAVVGGKNVSVPRSEEGSPVSPGRPTVAVVCLVMALRGDALKRLGLDKSV 1029
            D  K+ V+ A      F +PG ALAA+SGGR++G  F       +S  SS   S      + +I  G                                TDVV+  G +  A  +   + E A++ RT              +G+++ K+Q A+ C +RG +S+LG +E ++   D+ S+  +A +VS++SLAL RR  DWV+ A E +   +      E   SQ S + R K+ERET  +V GK+ S  R  E      G+ T+AV+ +V+A+ G  L  +   KS+
Sbjct:   80 DSFKRGVIMALAVVALFLSPGDALAAKSGGRVAGSGFRAGVAARSSMKSSSVRSAVKSPAQRQIGGGVIVAPPPLSPLGYXXXXXXXXXXXXXFYAPLLTDVVVL-GGVAYAGAMAYNMFENARQGRT--------------SGINIAKVQVAVCCDNRGPSSLLGTVERLARECDSRSQSSMANLVSDVSLALLRREVDWVSAAVETKTVTD--ITEGENICSQMSFKERMKVERETFNLVAGKDKSEARGSEAKLDDIGKSTIAVITMVVAMEGKKLPEIRDSKSL 350
[Close]
BLAST of mRNA_S-firma_F_contig1069.933.1 vs. uniprot
Match: A0A7S4S3K8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S3K8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.000e-12
Identity = 60/175 (34.29%), Postives = 100/175 (57.14%), Query Frame = 1 
Query:  556 GNLDDSPPSSLGAGVDVIKLQFAINCCDRGS-NSILGVLEDVSARGDTESRLGLAEVVSEISLALERRSSDWVALASELEHFNNRNTERAEATFSQYSVQLRAKIERETNAVVGGKNVSVPRSEEGSPVS----PGRPTVAVVCLVMALRGDALKRLGLDKSVNSVSGDNRVSCD 1065
            G +  S  S+LG GV V+KL  A+N   R   NSIL VL+ +S++  T+SR+G++ +VS++SL L RR    VA +S  ++  +    +A+  F+  SV+ R+K E+ET +  GG + S PR    S  S      + T+AVV L++++ GD+ +   +    +  S  +R++ D
Sbjct:  277 GTMTASTNSALGNGVSVVKLSIAMNVPKRDDPNSILSVLDRLSSKAKTDSRVGVSNLVSQVSLELLRRKDSIVAASSSYKNVGD--PIKAQREFNNLSVKERSKFEKETISKYGGVDYS-PRISADSSASYLKDAPQATMAVVTLLLSIDGDSTQVPNIRSVSDITSALSRIASD 448
[Close]
BLAST of mRNA_S-firma_F_contig1069.933.1 vs. uniprot
Match: A0A7S2IDZ6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IDZ6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.490e-11
Identity = 54/164 (32.93%), Postives = 95/164 (57.93%), Query Frame = 1 
Query:  580 SSLGAGVDVIKLQFAINCCDRGS-NSILGVLEDVSARGDTESRLGLAEVVSEISLALERRSSDWVALASELEHFNNRNTERAEATFSQYSVQLRAKIERETNAVVGGKNV-SVPRSEEGSPVSPGRPTVAVVCLVMALRGDALKRLGLDKSVNSVSGDNRVSCD 1065
            S+LG GV V+KL  A+N  +R   NSIL V++ +S    T+SR+G++ ++S++SL L RR    VA +S  +    ++  +A+  F+  SV+ R+K E+ET +  GG +  S       SP    + T+AVV L++++ GD+ +   +  + +  S  +R++ D
Sbjct:  273 SALGDGVSVVKLSVAMNVPNRDDPNSILSVIDRLSRTAKTDSRMGVSNLMSQVSLELLRRKDSIVAASSSYKKV--KDPTKAQREFNTLSVKERSKFEKETISRYGGVDYGSKVSGASSSPNDTHKATMAVVTLLLSIDGDSTQVPKIRSASDVASALSRIASD 434
[Close]
BLAST of mRNA_S-firma_F_contig1069.933.1 vs. uniprot
Match: A0A7S4S493_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S493_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.240e-8
Identity = 43/110 (39.09%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:  556 GNLDDSPPSSLGAGVDVIKLQFAINCCDRGS-NSILGVLEDVSARGDTESRLGLAEVVSEISLALERRSSDWVALASELEHFNNRNTERAEATFSQYSVQLRAKIERETN 882
            G +  S  S+LG GV V+KL  A+N   R   NSIL VL+ +S++  T+SR+G++ +VS++SL L RR    VA +S  ++  +    +A+  F+  SV+ R+K E+ET+
Sbjct:  277 GTMTASTNSALGNGVSVVKLSIAMNVPKRDDPNSILSVLDRLSSKAKTDSRVGVSNLVSQVSLELLRRKDSIVAASSSYKNVGD--PIKAQREFNNLSVKERSKFEKETS 384
[Close]
BLAST of mRNA_S-firma_F_contig1069.933.1 vs. uniprot
Match: H6WBA9_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA9_VAULI)

HSP 1 Score: 65.9 bits (159), Expect = 6.670e-8
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 3 
Query: 1257 LKSALQAISSGSLSDAGHNVLAAEVLWTPEEPWEVLSKEDVMADFPDLLD 1406
            LK+AL  ISS SL+D G NVLAAE++WTPE+  EVL +E ++ DFP+L+D
Sbjct:  281 LKNALSKISSDSLTDDGMNVLAAELIWTPEDAREVLDRESIIQDFPELMD 330
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1069.933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LDM2_ECTSI1.770e-9259.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZEJ7_9STRA1.110e-3248.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XX02_9STRA4.170e-2534.95Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
L1I7G9_GUITC1.770e-2042.03Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A6U4YZC0_HEMAN1.360e-1934.31Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0ECJ8_9CRYP9.620e-1729.86Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4S3K8_9STRA4.000e-1234.29Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2IDZ6_9STRA8.490e-1132.93Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4S493_9STRA2.240e-839.09Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
H6WBA9_VAULI6.670e-860.00Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1069contigS-firma_F_contig1069:21859..25276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LDM2
PFAMsDUF1517
Max annot lvl2759|Eukaryota
Evalue2.17e-96
EggNOG OGsCOG4371@1|root,2QUI9@2759|Eukaryota
DescriptionProtein of unknown function (DUF1517)
COG categoryS
Hectar predicted targeting categoryother localisation
Exons5
Model size1927
Cds size1200
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.8521912-UTR-S-firma_F_contig1069:21858..225311622815608.8521912-UTR-S-firma_F_contig1069:21858..22531Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1069 21859..22531 -
1696949451.1672208-UTR-S-firma_F_contig1069:21858..225311696949451.1672208-UTR-S-firma_F_contig1069:21858..22531Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1069 21859..22531 -
1622815608.9124002-UTR-S-firma_F_contig1069:25222..252761622815608.9124002-UTR-S-firma_F_contig1069:25222..25276Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1069 25223..25276 -
1696949451.2209747-UTR-S-firma_F_contig1069:25222..252761696949451.2209747-UTR-S-firma_F_contig1069:25222..25276Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1069 25223..25276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.8630574-CDS-S-firma_F_contig1069:22531..229211622815608.8630574-CDS-S-firma_F_contig1069:22531..22921Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 22532..22921 -
1696949451.1774957-CDS-S-firma_F_contig1069:22531..229211696949451.1774957-CDS-S-firma_F_contig1069:22531..22921Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 22532..22921 -
1622815608.8728204-CDS-S-firma_F_contig1069:23380..235831622815608.8728204-CDS-S-firma_F_contig1069:23380..23583Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 23381..23583 -
1696949451.186398-CDS-S-firma_F_contig1069:23380..235831696949451.186398-CDS-S-firma_F_contig1069:23380..23583Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 23381..23583 -
1622815608.88215-CDS-S-firma_F_contig1069:24024..241481622815608.88215-CDS-S-firma_F_contig1069:24024..24148Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 24025..24148 -
1696949451.195342-CDS-S-firma_F_contig1069:24024..241481696949451.195342-CDS-S-firma_F_contig1069:24024..24148Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 24025..24148 -
1622815608.8916464-CDS-S-firma_F_contig1069:24437..245751622815608.8916464-CDS-S-firma_F_contig1069:24437..24575Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 24438..24575 -
1696949451.2039094-CDS-S-firma_F_contig1069:24437..245751696949451.2039094-CDS-S-firma_F_contig1069:24437..24575Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 24438..24575 -
1622815608.901281-CDS-S-firma_F_contig1069:24877..252221622815608.901281-CDS-S-firma_F_contig1069:24877..25222Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 24878..25222 -
1696949451.2124164-CDS-S-firma_F_contig1069:24877..252221696949451.2124164-CDS-S-firma_F_contig1069:24877..25222Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1069 24878..25222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1069.933.1prot_S-firma_F_contig1069.933.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1069 22532..25222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1069.933.1

>prot_S-firma_F_contig1069.933.1 ID=prot_S-firma_F_contig1069.933.1|Name=mRNA_S-firma_F_contig1069.933.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=400bp
MRLQAVPVLLGCVPTPGFVVPGPVPSARFVGTGTVAGLARAQPRSAPTAV
SLLMAAVGGGNKKRPWESFATDVTKKAVVAATVAAVAFSAPGGALAARSG
GRISGGSFSHSYTTSSYSSGPSSQYYLRGRGRISDGTDVVLFCGALGVAY
GLDRGVEELAKRVRTPFGNLDDSPPSSLGAGVDVIKLQFAINCCDRGSNS
ILGVLEDVSARGDTESRLGLAEVVSEISLALERRSSDWVALASELEHFNN
RNTERAEATFSQYSVQLRAKIERETNAVVGGKNVSVPRSEEGSPVSPGRP
TVAVVCLVMALRGDALKRLGLDKSVNSVSGDNRVSCDAGLFISSRWFAAA
DGSVLVVVRPRPTYMLFRTGPLSTTANSFRLKDVSPSHLTLKFDARRCC*
back to top

mRNA from alignment at S-firma_F_contig1069:21859..25276-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1069.933.1 ID=mRNA_S-firma_F_contig1069.933.1|Name=mRNA_S-firma_F_contig1069.933.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3418bp|location=Sequence derived from alignment at S-firma_F_contig1069:21859..25276- (Sphaerotrichia firma ET2_F female)
ACCTCCTGCGCACCTTCAGTCATCTCTCCTCCGACACAACGAAAAAGGAC
GGCGATGAGATTGCAAGCGGTGCCAGTCCTCCTGGGGTGTGTCCCGACGC
CCGGCTTTGTTGTGCCTGGGCCCGTACCCTCCGCTCGCTTTGTGGGCACT
GGCACCGTGGCCGGGCTCGCCAGAGCGCAGCCGCGATCAGCGCCCACCGC
CGTGTCGCTCCTCATGGCAGCAGTTGGGGGTGGCAACAAAAAGCGCCCAT
GGGAGTCTTTCGCGACAGATGTGACAAAGAAGGCCGTTGTCGCAGCCACG
GTTGCTGCTGTCGCTTTCTCGGCTCCGGGGGGTGCTCTTGCCGCCAGATC
CGGCGGAAGGATATCGGGGGGTTCGTTCTCCCACTCCTACACCACGTCGG
TAAGTCCATCCTTCCAACTGCGGTGCGTCGAGATGGGAGTCGTTCTGCCT
CCAGAAGGAGGTTGGCTGACAGGGTGCGTTTGCATGGAGCAGGTACATAG
AACTGCACGGCTGTCTGGGCCGGGAGGGCTCTCGAGGAGAACTCGCAGGA
TGCACCGTGTGCGTCCCACCATCGTTGCGATCCAACCTTTGAATACAGAA
CTCCGTGCGCGCCCGCCTACTACGGTACACGTCCACCCACCCCACAACTC
CAATCCTGCCCGTGGTTACCGCGTCTTTTCTCCCCCCCTGACTTGCAACA
GTCTTATTCCTCGGGGCCGTCTTCGCAGTATTATTTGAGAGGGAGAGGAC
GCATCTCTGACGGCACCGATGTGGTCTTGTTTTGCGGCGCATTGGGCGTG
GCGTACGGCCTTGACCGCGGCGTCGAAGAGCTCGCCAAGGTCTGACACCT
TTTTCTGACATAATTCAACAGAAAGGCGCAAGCACCATCCTGGATGTGGT
GTCAGGGCAAACTAGTATCGAGTTTGTGGTTTTCAGAAAGTAATCCAGAG
AGTTGGGTCAGGCCGAATAGTGGGAAACTCCGATGGGAGAACGAAGGCAG
CCTACAGAATCCGCTACTCTGTGTCGTTAACAGAAGTGGTTGTATGGTAG
AACGGCGATGCAATGATTGATAGCCGTGCCGCTTCCTGTCCGTCTTTGCG
ACTATGGTTGATGTGACCGGAAATTCAGAGGGTAAGGACGCCATTTGGAA
ACCTGGACGACTCTCCTCCGTCCAGCCTAGGGGCGGGTGTGGACGTGATC
AAGCTGCAGTTTGCTATCAATTGCTGTGACAGGGGCTCCAACTCAATCCT
GGGTGAGCACCCTGCCCTTGGACGATGGCGTTTGTAGCTGCCAAGCTCTT
CGGCCTGGCGCATTGTGCTACTTTGACGAGGTGGTAGGGGTTGGTTCCAG
TTCGGTGACACTGATCGGCATCAATGATTCGCTAACTAGAATGTGGAAGA
AAGGCGGCAGGGCCACCGGGAAGGAGCCGGATCTTCCTCGCGGAAAAATT
TCGCTGCTGCATCCTGCCGGTTATGTTTTGTGGTGTGTGCCGCACAAACA
AAAATATATGGGGGCGTTTATTTTTTTTGAAGTACTATTCTAAGTGTGGG
AGGGTGATTTTTACACGATGATCACAGAAGCAGTCGGAGCGCAGCCATCT
ACATATGGCCCTTTTCGGTTGAGTCAAGCGGCGGTATGATACCAGGGCCC
CCCCCGTGCCTTGAACAACTTAGCCGCCACGGATTCCATGCAGGCGTCCT
TGAGGATGTGTCAGCACGAGGGGACACCGAATCTCGCTTGGGGCTTGCTG
AGGTGGTGAGCGAGATCAGCCTTGCCCTGGAACGGAGGTCATCGGACTGG
GTAGCCTTGGCGAGCGAGCTGGAGCACTTCAACAACCGCAACACGGAGCG
CGCGGAGGCCACCTTCAGCCAGTACAGCGTCCAGCTCAGGGCCAAGGTGC
GGTGCATTGAGCATATCGCTCGGCTGGAGCTGATCGGACTTGTGTTCCGA
GGCATGGATAAGGCATAGATTTTGGCTGGGTGGAATCGTTTGGAGGGAAG
AACAATTGTTAACGTTTGGCCTCTCTATTGACCGATTCCGGTGGTCATGT
CGAGCTTAGGTTTCAGGTGGGCGAACTGCAATGTGCGCGGTTTGCCTCGT
TCGTGCACGCTGCTTTTATCGTGATGATGAGCAGCGAGCGCACACGAAAA
AAATATCCGCTATAGGGGTTTTTTACCCCCGACCACCTGTCCGCGCATCA
AGTCGACATCAAATGCTCACACCTAACCCACCTCACCTTACCCACCTCGG
AACTGCCCTGGCGGGTGTCTCGAACCCTTCTCTGCCACAAAATGGTGCAA
ACCTTCCTCCTCGTATGTATGTCCTACCATGTGGTTCGTCAATTTTTTTC
CGTAGATCGAACGCGAGACCAATGCGGTTGTAGGGGGCAAGAACGTTTCG
GTGCCACGGTCCGAGGAAGGAAGTCCGGTATCGCCCGGCAGACCCACGGT
GGCGGTTGTTTGCCTGGTGATGGCTCTTCGAGGAGACGCGCTGAAGAGGC
TGGGGCTCGACAAAAGCGTCAACAGCGTTTCTGGTGATAACCGTGTTTCA
TGCGATGCCGGGCTTTTTATTTCTTCTCGTTGGTTTGCTGCTGCTGATGG
CTCTGTTTTGGTCGTAGTGCGCCCCCGCCCCACCTACATGCTTTTTCGCA
CCGGTCCCCTCTCGACCACCGCAAACTCTTTCCGCTTAAAAGACGTGTCG
CCTTCCCACCTCACACTAAAGTTCGACGCCCGTCGTTGTTGTTAGGCCTC
AAGTCAGCGTTGCAAGCCATCTCCAGCGGGTCCCTGTCCGACGCTGGACA
CAACGTGTTGGCCGCGGAGGTGCTCTGGACACCAGAAGAGCCTTGGGAGG
TACTTTCGAAAGAAGACGTCATGGCAGACTTCCCGGACCTCTTGGATCCT
GCTCTAGCGTGTTTGGAGGTAGAAAACGAGCGTCCTTGTGAGTAAACTCC
TGTATTTGGCACGCAACATGCGTTCTCCTCTGTCAGGTTTGCCACATTAG
TTCGAAAGCCGCGTTGCTAGGCCCTTGATTTTGCAGCTAGGTGTCCTTGC
TTCCTTTGAGCCGTGCATTTTTTCGTGGAGTTATGGACATTGAGTGCGTA
GGACGATCCCGGTGCTTGAACTCTGTTGCCGAACTTGAATTGGGTGCTGG
CGGTATGTGTCTCATGCGGGCAAGTGATCCCTCCAGCGTGAGTGGGTCGG
TATTTCTCAGTCGCTGAGACGGAGAGGGTTCGGTTGTGAGGACCGGGAGC
GCAAGTTGGTTGTTTTTGTGTTGTCCCTACTATGTTATTTATTTTCATTG
CACATATATATGTCGTTGTCGTGGAGAGCGGGCCGACCACGAACACGCAG
TGCACGCGGTGCGAAAACTCACAGGAGGACTCAAACCTTGAGACAAAAGT
GAAAAACACAAGGGCGCC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1069:21859..25276-

>mRNA_S-firma_F_contig1069.933.1 ID=mRNA_S-firma_F_contig1069.933.1|Name=mRNA_S-firma_F_contig1069.933.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2400bp|location=Sequence derived from alignment at S-firma_F_contig1069:21859..25276- (Sphaerotrichia firma ET2_F female)
ATGAGATTGCAAGCGGTGCCAGTCCTCCTGGGGTGTGTCCCGACGCCCGG
CTTTGTTGTGCCTGGGCCCGTACCCTCCGCTCGCTTTGTGGGCACTGGCA
CCGTGGCCGGGCTCGCCAGAGCGCAGCCGCGATCAGCGCCCACCGCCGTG
TCGCTCCTCATGGCAGCAGTTGGGGGTGGCAACAAAAAGCGCCCATGGGA
GTCTTTCGCGACAGATGTGACAAAGAAGGCCGTTGTCGCAGCCACGGTTG
CTGCTGTCGCTTTCTCGGCTCCGGGGGGTGCTCTTGCCGCCAGATCCGGC
GGAAGGATATCGGGGGGTTCGTTCTCCCACTCCTACACCACGTCGATGAG
ATTGCAAGCGGTGCCAGTCCTCCTGGGGTGTGTCCCGACGCCCGGCTTTG
TTGTGCCTGGGCCCGTACCCTCCGCTCGCTTTGTGGGCACTGGCACCGTG
GCCGGGCTCGCCAGAGCGCAGCCGCGATCAGCGCCCACCGCCGTGTCGCT
CCTCATGGCAGCAGTTGGGGGTGGCAACAAAAAGCGCCCATGGGAGTCTT
TCGCGACAGATGTGACAAAGAAGGCCGTTGTCGCAGCCACGGTTGCTGCT
GTCGCTTTCTCGGCTCCGGGGGGTGCTCTTGCCGCCAGATCCGGCGGAAG
GATATCGGGGGGTTCGTTCTCCCACTCCTACACCACGTCGTCTTATTCCT
CGGGGCCGTCTTCGCAGTATTATTTGAGAGGGAGAGGACGCATCTCTGAC
GGCACCGATGTGGTCTTGTTTTGCGGCGCATTGGGCGTGGCGTACGGCCT
TGACCGCGGCGTCGAAGAGCTCGCCAAGTCTTATTCCTCGGGGCCGTCTT
CGCAGTATTATTTGAGAGGGAGAGGACGCATCTCTGACGGCACCGATGTG
GTCTTGTTTTGCGGCGCATTGGGCGTGGCGTACGGCCTTGACCGCGGCGT
CGAAGAGCTCGCCAAGAGGGTAAGGACGCCATTTGGAAACCTGGACGACT
CTCCTCCGTCCAGCCTAGGGGCGGGTGTGGACGTGATCAAGCTGCAGTTT
GCTATCAATTGCTGTGACAGGGGCTCCAACTCAATCCTGGAGGGTAAGGA
CGCCATTTGGAAACCTGGACGACTCTCCTCCGTCCAGCCTAGGGGCGGGT
GTGGACGTGATCAAGCTGCAGTTTGCTATCAATTGCTGTGACAGGGGCTC
CAACTCAATCCTGGGCGTCCTTGAGGATGTGTCAGCACGAGGGGACACCG
AATCTCGCTTGGGGCTTGCTGAGGTGGTGAGCGAGATCAGCCTTGCCCTG
GAACGGAGGTCATCGGACTGGGTAGCCTTGGCGAGCGAGCTGGAGCACTT
CAACAACCGCAACACGGAGCGCGCGGAGGCCACCTTCAGCCAGTACAGCG
TCCAGCTCAGGGCCAAGGCGTCCTTGAGGATGTGTCAGCACGAGGGGACA
CCGAATCTCGCTTGGGGCTTGCTGAGGTGGTGAGCGAGATCAGCCTTGCC
CTGGAACGGAGGTCATCGGACTGGGTAGCCTTGGCGAGCGAGCTGGAGCA
CTTCAACAACCGCAACACGGAGCGCGCGGAGGCCACCTTCAGCCAGTACA
GCGTCCAGCTCAGGGCCAAGATCGAACGCGAGACCAATGCGGTTGTAGGG
GGCAAGAACGTTTCGGTGCCACGGTCCGAGGAAGGAAGTCCGGTATCGCC
CGGCAGACCCACGGTGGCGGTTGTTTGCCTGGTGATGGCTCTTCGAGGAG
ACGCGCTGAAGAGGCTGGGGCTCGACAAAAGCGTCAACAGCGTTTCTGGT
GATAACCGTGTTTCATGCGATGCCGGGCTTTTTATTTCTTCTCGTTGGTT
TGCTGCTGCTGATGGCTCTGTTTTGGTCGTAGTGCGCCCCCGCCCCACCT
ACATGCTTTTTCGCACCGGTCCCCTCTCGACCACCGCAAACTCTTTCCGC
TTAAAAGACGTGTCGCCTTCCCACCTCACACTAAAGTTCGACGCCCGTCG
TTGTTGTTAGATCGAACGCGAGACCAATGCGGTTGTAGGGGGCAAGAACG
TTTCGGTGCCACGGTCCGAGGAAGGAAGTCCGGTATCGCCCGGCAGACCC
ACGGTGGCGGTTGTTTGCCTGGTGATGGCTCTTCGAGGAGACGCGCTGAA
GAGGCTGGGGCTCGACAAAAGCGTCAACAGCGTTTCTGGTGATAACCGTG
TTTCATGCGATGCCGGGCTTTTTATTTCTTCTCGTTGGTTTGCTGCTGCT
GATGGCTCTGTTTTGGTCGTAGTGCGCCCCCGCCCCACCTACATGCTTTT
TCGCACCGGTCCCCTCTCGACCACCGCAAACTCTTTCCGCTTAAAAGACG
TGTCGCCTTCCCACCTCACACTAAAGTTCGACGCCCGTCGTTGTTGTTAG
back to top