mRNA_S-firma_F_contig10686.927.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10686.927.1
Unique NamemRNA_S-firma_F_contig10686.927.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10686.927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10686contigS-firma_F_contig10686:2467..2962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.9898312-CDS-S-firma_F_contig10686:2466..28801622815607.9898312-CDS-S-firma_F_contig10686:2466..2880Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10686 2467..2880 +
1696949450.540966-CDS-S-firma_F_contig10686:2466..28801696949450.540966-CDS-S-firma_F_contig10686:2466..2880Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10686 2467..2880 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.001222-UTR-S-firma_F_contig10686:2880..29621622815608.001222-UTR-S-firma_F_contig10686:2880..2962Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10686 2881..2962 +
1696949450.550556-UTR-S-firma_F_contig10686:2880..29621696949450.550556-UTR-S-firma_F_contig10686:2880..2962Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10686 2881..2962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10686.927.1prot_S-firma_F_contig10686.927.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10686 2467..2880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10686.927.1

>prot_S-firma_F_contig10686.927.1 ID=prot_S-firma_F_contig10686.927.1|Name=mRNA_S-firma_F_contig10686.927.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=138bp
ESWHRAPGTQRRQNKRRGRDKAKTRGAKRRWLEQQDRNYRPLTLCCLSAT
LARGSTIHQHWTFVFRRSRKNSLFLLLPYPGRPLACVAWAVATTAVASIS
TRGCLLPLAPPPSPSQAQAVSPADWNVRSTPIINIIV*
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mRNA from alignment at S-firma_F_contig10686:2467..2962+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10686.927.1 ID=mRNA_S-firma_F_contig10686.927.1|Name=mRNA_S-firma_F_contig10686.927.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=496bp|location=Sequence derived from alignment at S-firma_F_contig10686:2467..2962+ (Sphaerotrichia firma ET2_F female)
GAATCTTGGCACCGAGCGCCAGGGACACAAAGAAGGCAAAACAAAAGACG
AGGCAGAGACAAGGCGAAGACAAGGGGTGCAAAAAGAAGGTGGTTGGAAC
AACAAGACCGCAATTATCGTCCACTCACTCTCTGCTGTCTGTCTGCGACA
TTAGCTCGAGGCTCCACCATCCATCAACACTGGACGTTCGTTTTCAGGCG
CAGCCGCAAGAACAGTTTGTTCCTTCTGCTTCCCTATCCTGGGCGGCCTC
TCGCGTGTGTCGCGTGGGCTGTGGCGACCACCGCCGTGGCGTCAATATCC
ACAAGAGGATGCTTGTTGCCACTTGCACCTCCACCGAGCCCCAGCCAAGC
CCAAGCCGTGTCCCCTGCAGATTGGAATGTCCGATCCACCCCGATAATAA
ATATAATAGTGTGACCACCACTGCATCAACACTCAACATGCACGACACTT
TTCGTATCTTTTGGGCGGCAGTAGATTCGCGAAAACCCAGGCCAGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10686:2467..2962+

>mRNA_S-firma_F_contig10686.927.1 ID=mRNA_S-firma_F_contig10686.927.1|Name=mRNA_S-firma_F_contig10686.927.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=828bp|location=Sequence derived from alignment at S-firma_F_contig10686:2467..2962+ (Sphaerotrichia firma ET2_F female)
GAATCTTGGCACCGAGCGCCAGGGACACAAAGAAGGCAAAACAAAAGACG
AGGCAGAGACAAGGCGAAGACAAGGGGTGCAAAAAGAAGGTGGTTGGAAC
AACAAGACCGCAATTATCGTCCACTCACTCTCTGCTGTCTGTCTGCGACA
TTAGCTCGAGGCTCCACCATCCATCAACACTGGACGTTCGTTTTCAGGCG
CAGCCGCAAGAACAGTTTGTTCCTTCTGCTTCCCTATCCTGGGCGGCCTC
TCGCGTGTGTCGCGTGGGCTGTGGCGACCACCGCCGTGGCGTCAATATCC
ACAAGAGGATGCTTGTTGCCACTTGCACCTCCACCGAGCCCCAGCCAAGC
CCAAGCCGTGTCCCCTGCAGATTGGAATGTCCGATCCACCCCGATAATAA
ATATAATAGTGTGAGAATCTTGGCACCGAGCGCCAGGGACACAAAGAAGG
CAAAACAAAAGACGAGGCAGAGACAAGGCGAAGACAAGGGGTGCAAAAAG
AAGGTGGTTGGAACAACAAGACCGCAATTATCGTCCACTCACTCTCTGCT
GTCTGTCTGCGACATTAGCTCGAGGCTCCACCATCCATCAACACTGGACG
TTCGTTTTCAGGCGCAGCCGCAAGAACAGTTTGTTCCTTCTGCTTCCCTA
TCCTGGGCGGCCTCTCGCGTGTGTCGCGTGGGCTGTGGCGACCACCGCCG
TGGCGTCAATATCCACAAGAGGATGCTTGTTGCCACTTGCACCTCCACCG
AGCCCCAGCCAAGCCCAAGCCGTGTCCCCTGCAGATTGGAATGTCCGATC
CACCCCGATAATAAATATAATAGTGTGA
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