mRNA_S-firma_F_contig10685.925.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10685.925.1
Unique NamemRNA_S-firma_F_contig10685.925.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10685.925.1 vs. uniprot
Match: D7FSZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ1_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 7.310e-46
Identity = 90/143 (62.94%), Postives = 104/143 (72.73%), Query Frame = 1 
Query:    1 QDLFDIVLAGPLVGLAASTAALLVGLQMTAAAGTEALAGFPSLPSSLLQGSSFVGSLVDAFLHTNLGAQDIVAERIAMHPLAVGGAVAMLWNAATVLPLPGSDGKTAIDTLNNELPVAAVASFLATTFVVRSRWGFCRYLFSV 429
            QDLFD+ +AGP VG A + AAL++GLQMTAAAG + LAGFPSLPSSLLQ SS VGS+VD FLHTNL  QD+  ER+AMHPLAVGG   MLW AATVLPLPGSDG+  IDTL+      A+ + LA  F V    G   +L SV
Sbjct:  449 QDLFDVAIAGPTVGFATAAAALVMGLQMTAAAGPDVLAGFPSLPSSLLQCSSLVGSVVDYFLHTNLAVQDLAVERVAMHPLAVGGVAGMLWTAATVLPLPGSDGEAVIDTLDTNFKYNAIVTPLAYLFAVSQIIGGGMFLLSV 591
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BLAST of mRNA_S-firma_F_contig10685.925.1 vs. uniprot
Match: A0A7S2A261_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A261_TRICV)

HSP 1 Score: 77.0 bits (188), Expect = 3.490e-14
Identity = 51/136 (37.50%), Postives = 72/136 (52.94%), Query Frame = 1 
Query:    1 QDLFDIVLAGPLVGLAASTAALLVGLQMTAAAGTEALAGFPSLPSSLLQGSSFVGSLVDAFLHTN-LGAQDIVAERIAMHPLAVGGAVAMLWNAATVLPLPGSDGKTAIDTLNNELPVAAVASFLATTFVVRSRWG 405
              LFD  +AGPL GL AS A L+VGL+ T  +   ALA FP+LP S ++ SS VG +V   L    L   +   + IA+HPLAV G   ++ N+ ++LPL  +DG      L        V +F +   V+   +G
Sbjct:   84 NSLFDFAVAGPLAGLVASFALLVVGLESTLYSDAAALAQFPNLPISFVRSSSLVGGIVQGLLGDGILLTPNPALDTIALHPLAVAGFAGLMINSLSLLPLGNTDGGRVCQALFGRSWSRIVTTFTSLFMVLAGVFG 219
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BLAST of mRNA_S-firma_F_contig10685.925.1 vs. uniprot
Match: A0A7S2A296_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A296_TRICV)

HSP 1 Score: 77.0 bits (188), Expect = 1.150e-13
Identity = 51/136 (37.50%), Postives = 72/136 (52.94%), Query Frame = 1 
Query:    1 QDLFDIVLAGPLVGLAASTAALLVGLQMTAAAGTEALAGFPSLPSSLLQGSSFVGSLVDAFLHTN-LGAQDIVAERIAMHPLAVGGAVAMLWNAATVLPLPGSDGKTAIDTLNNELPVAAVASFLATTFVVRSRWG 405
              LFD  +AGPL GL AS A L+VGL+ T  +   ALA FP+LP S ++ SS VG +V   L    L   +   + IA+HPLAV G   ++ N+ ++LPL  +DG      L        V +F +   V+   +G
Sbjct:  649 NSLFDFAVAGPLAGLVASFALLVVGLESTLYSDAAALAQFPNLPISFVRSSSLVGGIVQGLLGDGILLTPNPALDTIALHPLAVAGFAGLMINSLSLLPLGNTDGGRVCQALFGRSWSRIVTTFTSLFMVLAGVFG 784
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BLAST of mRNA_S-firma_F_contig10685.925.1 vs. uniprot
Match: R7Q4W8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4W8_CHOCR)

HSP 1 Score: 70.1 bits (170), Expect = 2.840e-11
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:    1 QDLFDIVLAGPLVGLAASTAALLVGLQMTAAAGTEALAGFPSLPSSLLQGSSFVGSLVDAFLHTNLGAQDIVAERIAMHPLAVGGAVAMLWNAATVLPLPGSDG 312
            +DLFD+ +AGPLVG  AS +AL+ GL +T++   +    FP +PS+L   S  VGSL D  L   L  Q      IA+HPLAV G   +L NA  ++P+   DG
Sbjct:  361 KDLFDVAVAGPLVGSVASISALIAGLLITSSG--QIADWFPQVPSALFHASILVGSLADIILPAGLREQ----ATIAVHPLAVVGYTGLLANALNLMPIGRLDG 458
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BLAST of mRNA_S-firma_F_contig10685.925.1 vs. uniprot
Match: A0A7S3P6Y7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6Y7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.040e-10
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:    1 QDLFDIVLAGPLVGLAASTAALLVGLQMTAAAGTEALAGFPSLPSSLLQGSSFVGSLVDAFLHTN--------LGAQDIVAERIAMHPLAVGGAVAMLWNAATVLPLPGSDG 312
            Q +FD  +AGPLVG+ AS AA++VG Q++    T  L+  P++P  +L+ SS  G ++DA +           LG + +    I +HP+AV G + ++ NA  VLP+  +DG
Sbjct:  657 QAMFDFSVAGPLVGMVASIAAIVVGAQLSM---TSDLSMLPNMPLEILRQSSLGGGILDAIMGNGVLSVPDGALGTRAVATMTIPLHPVAVAGFIGLIVNALNVLPIGTTDG 765
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BLAST of mRNA_S-firma_F_contig10685.925.1 vs. uniprot
Match: A0A7J7IQ76_9RHOD (Peptidase M50 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IQ76_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 2.530e-10
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:    7 LFDIVLAGPLVGLAASTAALLVGLQMTAAAGTEALAGFPSLPSSLLQGSSFVGSLVDAFLHTNLGAQDIVAERIAMHPLAVGGAVAMLWNAATVLPLPGSDG 312
            LFD+ +AGP+ GLAAS  AL+ GL +TA  G+  L  FP +PS L   S  +G+L  A L  ++ +Q      IA+HPL V G   +L  A  +LP+  +DG
Sbjct:  437 LFDVAVAGPVAGLAASMLALIAGLILTAQQGSTPLDWFPQIPSGLFDASLLIGALGKAVLPQSVLSQ----PTIAVHPLCVVGYTGLLSQALQLLPVGRTDG 534
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10685.925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FSZ1_ECTSI7.310e-4662.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2A261_TRICV3.490e-1437.50Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2A296_TRICV1.150e-1337.50Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
R7Q4W8_CHOCR2.840e-1143.27Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S3P6Y7_9STRA1.040e-1036.61Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7J7IQ76_9RHOD2.530e-1042.16Peptidase M50 n=1 Tax=Cyanidiococcus yangmingshane... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10685contigS-firma_F_contig10685:2882..4586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog35128.Thaps20920
Max annot lvl2836|Bacillariophyta
Evalue6.56e-14
EggNOG OGsCOG0750@1|root,2QQ7R@2759|Eukaryota,2XA85@2836|Bacillariophyta
Descriptionresponse to high light intensity
COG categoryU
Hectar predicted targeting categorysignal peptide
Exons3
Model size429
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10685.925.1prot_S-firma_F_contig10685.925.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10685 2882..4586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.9199371-CDS-S-firma_F_contig10685:2881..29961622815607.9199371-CDS-S-firma_F_contig10685:2881..2996Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10685 2882..2996 +
1696949450.4981217-CDS-S-firma_F_contig10685:2881..29961696949450.4981217-CDS-S-firma_F_contig10685:2881..2996Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10685 2882..2996 +
1622815607.9339054-CDS-S-firma_F_contig10685:3769..38971622815607.9339054-CDS-S-firma_F_contig10685:3769..3897Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10685 3770..3897 +
1696949450.5121045-CDS-S-firma_F_contig10685:3769..38971696949450.5121045-CDS-S-firma_F_contig10685:3769..3897Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10685 3770..3897 +
1622815607.948128-CDS-S-firma_F_contig10685:4400..45861622815607.948128-CDS-S-firma_F_contig10685:4400..4586Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10685 4401..4586 +
1696949450.5292897-CDS-S-firma_F_contig10685:4400..45861696949450.5292897-CDS-S-firma_F_contig10685:4400..4586Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10685 4401..4586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10685.925.1

>prot_S-firma_F_contig10685.925.1 ID=prot_S-firma_F_contig10685.925.1|Name=mRNA_S-firma_F_contig10685.925.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=143bp
QDLFDIVLAGPLVGLAASTAALLVGLQMTAAAGTEALAGFPSLPSSLLQG
SSFVGSLVDAFLHTNLGAQDIVAERIAMHPLAVGGAVAMLWNAATVLPLP
GSDGKTAIDTLNNELPVAAVASFLATTFVVRSRWGFCRYLFSV
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mRNA from alignment at S-firma_F_contig10685:2882..4586+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10685.925.1 ID=mRNA_S-firma_F_contig10685.925.1|Name=mRNA_S-firma_F_contig10685.925.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1705bp|location=Sequence derived from alignment at S-firma_F_contig10685:2882..4586+ (Sphaerotrichia firma ET2_F female)
CAGGACCTGTTTGATATAGTACTAGCCGGACCGCTGGTTGGGCTGGCGGC
TTCCACCGCAGCGTTGTTGGTGGGCCTGCAGATGACCGCCGCTGCCGGCA
CCGAAGCTCTGGCAGGTACTGTAGGTTCCGTTGTGGTTGAATTCAGCACC
TCTACTGCGGCGCCGCATCGTCGCCTTGATGACATGCGCCTACCTTGCCT
TTGTTGCAAACAAGTCGGGAAAATCAAACCGGAAAACAGAGGCTTCCGGT
TTTCTGTTACATTTACGTTTCGCTCCCTTTTTTATGTTGTTGTGTTTTTC
GTGAGTTGTTTCCCCTCGTGTTTTGGTGGGTGCTCTTTCTCGGAGGTTCG
TTCGTGTACGTGGTAAAATTGCTCTCTTTTCTCCCCTCTTTTCTTTCGCA
TCTTGCTCCCGCGCTTAAGTAGTTTTGGGCGTTCCCCCGGAAAGCTGGTC
GTCGGGTTGGTCTATTTTGTCATGCCGAAAAACACCGCCGGCGCGAGCGC
GCTCTTGTGTTGTTTCTCCGGAGAACCAGTGACTGCCTCGGAAAGGGATT
GATCGGTTGGTTGAGGTGGCGTACGCTGCGTGCGTGTTGTTGCTGGTTGT
CTCTCCGCGTCGATTGATTTGGTTGTTGTCGCGTGAGCTTGTGCGCGCGT
GATTGCTTTTTTGGTCTGCGCATCGGTTGATTTGATGCGGCGTACAATTG
TGCGCATGTTGTTGCTGGCTGGCTGTCTCTGTCTCGCTCCCTGTCTCTCT
CTTCCTCGCTCTCTGTCTGTCTTTCTGTCTCTCTCTGTCTCTCTCTGTCT
CTCTCTCTCTATCTCTCTGTTTCTCTCTCTCTCTGTCTGTCTCTCTCTCT
CTCTGTCTCTCTCTGTCTCTCTCTGTCTGTCTCCTCAGGGTTTCCTTCTC
TACCGTCGAGCCTTCTTCAAGGAAGCTCGTTCGTGGGATCGCTCGTGGAC
GCTTTCCTGCACACGAACCTCGGGGCTCAAGACATCGTAGCAGAGAGAAT
CGCGATGCACCCACTGGTGAGTGGGTCAAGTGTAGAGAGACTCAACGGAG
GGGAGGTCAGAAGATTTTGCACTGGGGGCTTGATCTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTCTACATGATGGTGCTGGTTGTTGTTGTTGTTGT
TGTTGTTGTTGCTATGGTGCTACTGCTGCTGCTGCTACTGCTGCTGCCGC
TGCTGCTATTCCTGTGTGTTGTTGGTGTGGATGTTGGTGATGGTGGTGTT
GATGGTGAAATTGTCGTTTTTATCTCTGTCTCTTTCTCTACTTCCAACGC
ATGACCCCCCACCCATCCCTCCAAAGCTTTTTGAGTTCGATCAAGCAAAC
CACAAACCCCACCTATGATCACGAGAATTGACCATCTATTTCTGACACAA
ACATAGTGTCGGATCAGCTCGGGCGGGGGGAGGTACTGTCCGGTACTGGA
TAGAGACATCGGAACAGTTTCCAACGTCAAGACGACGATATACAAAACTT
GCTTGTGGCGATCGGTCAGGCGGTGGGAGGGGCAGTGGCAATGCTGTGGA
ACGCGGCGACCGTTCTTCCGTTGCCGGGGTCGGATGGCAAGACTGCCATC
GACACGCTCAACAACGAGTTGCCGGTCGCGGCCGTCGCCAGCTTCCTCGC
GACGACGTTCGTGGTGAGATCCAGATGGGGGTTCTGTAGGTACCTGTTTA
GCGTT
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Coding sequence (CDS) from alignment at S-firma_F_contig10685:2882..4586+

>mRNA_S-firma_F_contig10685.925.1 ID=mRNA_S-firma_F_contig10685.925.1|Name=mRNA_S-firma_F_contig10685.925.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=858bp|location=Sequence derived from alignment at S-firma_F_contig10685:2882..4586+ (Sphaerotrichia firma ET2_F female)
CAGGACCTGTTTGATATAGTACTAGCCGGACCGCTGGTTGGGCTGGCGGC
TTCCACCGCAGCGTTGTTGGTGGGCCTGCAGATGACCGCCGCTGCCGGCA
CCGAAGCTCTGGCAGCAGGACCTGTTTGATATAGTACTAGCCGGACCGCT
GGTTGGGCTGGCGGCTTCCACCGCAGCGTTGTTGGTGGGCCTGCAGATGA
CCGCCGCTGCCGGCACCGAAGCTCTGGCAGGGTTTCCTTCTCTACCGTCG
AGCCTTCTTCAAGGAAGCTCGTTCGTGGGATCGCTCGTGGACGCTTTCCT
GCACACGAACCTCGGGGCTCAAGACATCGTAGCAGAGAGAATCGCGATGC
ACCCACTGGGTTTCCTTCTCTACCGTCGAGCCTTCTTCAAGGAAGCTCGT
TCGTGGGATCGCTCGTGGACGCTTTCCTGCACACGAACCTCGGGGCTCAA
GACATCGTAGCAGAGAGAATCGCGATGCACCCACTGGCGGTGGGAGGGGC
AGTGGCAATGCTGTGGAACGCGGCGACCGTTCTTCCGTTGCCGGGGTCGG
ATGGCAAGACTGCCATCGACACGCTCAACAACGAGTTGCCGGTCGCGGCC
GTCGCCAGCTTCCTCGCGACGACGTTCGTGGTGAGATCCAGATGGGGGTT
CTGTAGGTACCTGTTTAGCGTTGCGGTGGGAGGGGCAGTGGCAATGCTGT
GGAACGCGGCGACCGTTCTTCCGTTGCCGGGGTCGGATGGCAAGACTGCC
ATCGACACGCTCAACAACGAGTTGCCGGTCGCGGCCGTCGCCAGCTTCCT
CGCGACGACGTTCGTGGTGAGATCCAGATGGGGGTTCTGTAGGTACCTGT
TTAGCGTT
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