mRNA_S-firma_F_contig10682.921.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10682.921.1
Unique NamemRNA_S-firma_F_contig10682.921.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10682.921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10682contigS-firma_F_contig10682:332..656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size326
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.6413493-UTR-S-firma_F_contig10682:331..3381622815607.6413493-UTR-S-firma_F_contig10682:331..338Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10682 332..338 +
1696949450.3301034-UTR-S-firma_F_contig10682:331..3381696949450.3301034-UTR-S-firma_F_contig10682:331..338Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10682 332..338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.655154-CDS-S-firma_F_contig10682:338..6561622815607.655154-CDS-S-firma_F_contig10682:338..656Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10682 339..656 +
1696949450.3394616-CDS-S-firma_F_contig10682:338..6561696949450.3394616-CDS-S-firma_F_contig10682:338..656Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10682 339..656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10682.921.1prot_S-firma_F_contig10682.921.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10682 339..656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10682.921.1

>prot_S-firma_F_contig10682.921.1 ID=prot_S-firma_F_contig10682.921.1|Name=mRNA_S-firma_F_contig10682.921.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=106bp
MQNKHFKVQEATKVHRATSHKGGVQVKARRRGKLTQHGGKGGRGAVHAGR
RRAVKQVLQDVRVQPVGRVHEEVAAVEGRAGDDCVRGVAGRHCAHALGDG
RRRLHS
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mRNA from alignment at S-firma_F_contig10682:332..656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10682.921.1 ID=mRNA_S-firma_F_contig10682.921.1|Name=mRNA_S-firma_F_contig10682.921.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=325bp|location=Sequence derived from alignment at S-firma_F_contig10682:332..656+ (Sphaerotrichia firma ET2_F female)
GGGGGGCATGCAAAACAAACACTTCAAGGTACAGGAGGCTACAAAAGTAC
ACCGCGCCACCTCACACAAAGGCGGCGTCCAGGTCAAAGCTCGACGTCGG
GGTAAGCTCACCCAACATGGCGGCAAAGGGGGACGCGGAGCCGTCCATGC
GGGGCGACGGCGGGCCGTCAAACAAGTCCTGCAGGATGTCCGTGTCCAGC
CCGTCGGCAGAGTCCACGAGGAGGTTGCCGCAGTCGAAGGGCGTGCTGGT
GATGACTGTGTCCGGGGAGTCGCCGGGCGCCATTGTGCGCACGCGCTTGG
CGACGGACGCCGCCGCCTCCACAGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10682:332..656+

>mRNA_S-firma_F_contig10682.921.1 ID=mRNA_S-firma_F_contig10682.921.1|Name=mRNA_S-firma_F_contig10682.921.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=636bp|location=Sequence derived from alignment at S-firma_F_contig10682:332..656+ (Sphaerotrichia firma ET2_F female)
ATGCAAAACAAACACTTCAAGGTACAGGAGGCTACAAAAGTACACCGCGC
CACCTCACACAAAGGCGGCGTCCAGGTCAAAGCTCGACGTCGGGGTAAGC
TCACCCAACATGGCGGCAAAGGGGGACGCGGAGCCGTCCATGCGGGGCGA
CGGCGGGCCGTCAAACAAGTCCTGCAGGATGTCCGTGTCCAGCCCGTCGG
CAGAGTCCACGAGGAGGTTGCCGCAGTCGAAGGGCGTGCTGGTGATGACT
GTGTCCGGGGAGTCGCCGGGCGCCATTGTGCGCACGCGCTTGGCGACGGA
CGCCGCCGCCTCCACAGCATGCAAAACAAACACTTCAAGGTACAGGAGGC
TACAAAAGTACACCGCGCCACCTCACACAAAGGCGGCGTCCAGGTCAAAG
CTCGACGTCGGGGTAAGCTCACCCAACATGGCGGCAAAGGGGGACGCGGA
GCCGTCCATGCGGGGCGACGGCGGGCCGTCAAACAAGTCCTGCAGGATGT
CCGTGTCCAGCCCGTCGGCAGAGTCCACGAGGAGGTTGCCGCAGTCGAAG
GGCGTGCTGGTGATGACTGTGTCCGGGGAGTCGCCGGGCGCCATTGTGCG
CACGCGCTTGGCGACGGACGCCGCCGCCTCCACAGC
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