mRNA_S-firma_F_contig10681.919.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10681.919.1
Unique NamemRNA_S-firma_F_contig10681.919.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10681.919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10681contigS-firma_F_contig10681:206..3252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2502
Cds size1680
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10681.919.1prot_S-firma_F_contig10681.919.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10681 1252..3166 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.510934-UTR-S-firma_F_contig10681:205..8951622815607.510934-UTR-S-firma_F_contig10681:205..895Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10681 206..895 -
1696949450.2401602-UTR-S-firma_F_contig10681:205..8951696949450.2401602-UTR-S-firma_F_contig10681:205..895Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10681 206..895 -
1622815607.5244212-UTR-S-firma_F_contig10681:1205..12511622815607.5244212-UTR-S-firma_F_contig10681:1205..1251Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10681 1206..1251 -
1696949450.2571177-UTR-S-firma_F_contig10681:1205..12511696949450.2571177-UTR-S-firma_F_contig10681:1205..1251Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10681 1206..1251 -
1622815607.5674515-UTR-S-firma_F_contig10681:3166..32521622815607.5674515-UTR-S-firma_F_contig10681:3166..3252Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10681 3167..3252 -
1696949450.300353-UTR-S-firma_F_contig10681:3166..32521696949450.300353-UTR-S-firma_F_contig10681:3166..3252Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10681 3167..3252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.5374787-CDS-S-firma_F_contig10681:1251..15941622815607.5374787-CDS-S-firma_F_contig10681:1251..1594Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10681 1252..1594 -
1696949450.2771707-CDS-S-firma_F_contig10681:1251..15941696949450.2771707-CDS-S-firma_F_contig10681:1251..1594Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10681 1252..1594 -
1622815607.5516202-CDS-S-firma_F_contig10681:1829..31661622815607.5516202-CDS-S-firma_F_contig10681:1829..3166Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10681 1830..3166 -
1696949450.290018-CDS-S-firma_F_contig10681:1829..31661696949450.290018-CDS-S-firma_F_contig10681:1829..3166Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10681 1830..3166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10681.919.1

>prot_S-firma_F_contig10681.919.1 ID=prot_S-firma_F_contig10681.919.1|Name=mRNA_S-firma_F_contig10681.919.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=560bp
MPSKCHQPACTKRPLYGVHNGSKAQFCSQHKKDGMVDVKSKKCGEQGCNK
GPSYGVDGSNKGDFCSQHKKDGMVNVISKRCSQQGCTKHPSFGVDGNTKP
EFCSQHKKDGMVNVISKRCSQQGCTKHPSFGVDGNAKPEFCSQHKKDGMV
HNVKGKRCSEQGCTKQPSFGVDGSAKPEFCSQHMKDGMVHVKGKRCGQQG
CPKKPSFGVDGSAKPEFCSQHKKDGMVDVKGKKCSQQRCPKHPSFGVEGS
AKPEFCSEHKKDGMVDVKGKKCSQQGCTKQPSFGVDGSAKPEFCSEHKKD
GMVDVKSKKCSQQGCTKHPSFGVDGKAEPEFCSQHKKDGMVDVKSKRCGQ
QGCPKHPSFGVDGSTKKREFCSQHKKDGMVNCTRGKRCSQQGCTKQPSFG
VDGSHKGQFCSQHKKDGMVDVKSKKCSQQSCTKQPSFGVDGNAKPDSALN
TRRTGWSTSLEPRRVDSAVVTILLAAGLGVAVLLQWLTQTPCAVMATKSG
EAAFRPPLQRRHRRAGVRRTTSGPAGFPPTWLWLRQKHRETREQPHHQRA
TSAFRSQTA*
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mRNA from alignment at S-firma_F_contig10681:206..3252-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10681.919.1 ID=mRNA_S-firma_F_contig10681.919.1|Name=mRNA_S-firma_F_contig10681.919.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3047bp|location=Sequence derived from alignment at S-firma_F_contig10681:206..3252- (Sphaerotrichia firma ET2_F female)
GTCATTCTACCCCGCTATTCCGCCTCACCACCTCGGCCGCGGCCGCCTCT
GCTTGCCTGTACATATACATCGTACGTCCTAGAAAGATGCCCAGCAAGTG
CCACCAGCCAGCCTGCACCAAGCGCCCGTTGTACGGTGTACATAATGGAA
GCAAGGCGCAGTTTTGCTCTCAACACAAGAAAGACGGGATGGTGGATGTG
AAGAGCAAGAAATGCGGCGAACAAGGGTGCAACAAGGGGCCATCGTACGG
CGTGGATGGTAGCAACAAGGGGGATTTCTGCTCTCAACACAAGAAGGACG
GGATGGTGAACGTCATCAGCAAGAGGTGCAGCCAACAAGGTTGCACCAAG
CACCCGTCATTTGGCGTGGATGGGAACACTAAGCCGGAGTTCTGCTCTCA
ACACAAGAAGGACGGGATGGTGAATGTCATCAGCAAGAGGTGCAGCCAAC
AAGGTTGCACCAAGCACCCGTCATTTGGCGTGGATGGGAACGCTAAGCCG
GAGTTCTGCTCTCAACACAAGAAGGACGGGATGGTACATAATGTGAAGGG
CAAGAGGTGTAGTGAACAAGGTTGCACCAAGCAGCCGTCGTTTGGCGTGG
ATGGTAGCGCTAAGCCGGAGTTCTGCTCTCAGCACATGAAGGACGGGATG
GTACATGTGAAGGGCAAGAGGTGTGGCCAACAAGGTTGCCCCAAGAAGCC
GTCATTTGGCGTGGATGGTAGCGCTAAGCCGGAGTTCTGCTCTCAACACA
AGAAGGACGGGATGGTGGATGTAAAGGGCAAGAAGTGCAGCCAACAACGT
TGCCCCAAGCACCCATCATTTGGCGTGGAAGGTAGCGCTAAGCCGGAGTT
CTGCTCTGAGCACAAGAAGGACGGGATGGTGGATGTGAAGGGCAAGAAGT
GCAGCCAACAAGGTTGCACCAAGCAGCCGTCATTTGGCGTGGATGGTAGC
GCTAAGCCGGAGTTCTGCTCTGAGCACAAGAAGGACGGGATGGTGGATGT
GAAGAGCAAGAAGTGCAGCCAACAAGGTTGCACCAAGCACCCGTCGTTTG
GCGTGGATGGGAAGGCTGAGCCTGAGTTCTGCTCTCAACACAAGAAGGAC
GGGATGGTGGATGTGAAGAGCAAGAGGTGTGGCCAACAAGGTTGCCCCAA
GCACCCGTCATTTGGCGTGGATGGTAGCACCAAGAAGAGGGAGTTCTGTT
CTCAACACAAGAAGGACGGGATGGTGAATTGTACCAGGGGGAAGAGGTGC
AGCCAACAAGGTTGCACCAAGCAGCCGTCATTTGGCGTGGATGGTAGCCA
CAAGGGGCAGTTCTGCTCTCAACACAAGAAGGACGGGATGGTGGATGTGA
AGAGCAAGAAGTGCAGCCAACAAAGTTGCACCAAGCAGCCGTCGTTTGGC
GTGGATGGGAACGCTAAGCCGGAGCTCTGCTCTCAACACAAGAAGGACGG
GATGGTGAATGTCGTCAACAAGAGGTGCAGCCAACAAGGTTGCACCAAGC
ACCCGTCATTTGGCGTGGATGGTAGCACCAAGAAGAGGGAGTTCTGCTCT
CAACACAAGAAGGACGGGATGGTGAATGTCACCTGCAAGAGGTGTGGCCA
ACAAGGTTGCACCAAGCAGCCGTCATTTGGCGTGGGTGGTAGCGATAATC
AGCCGGAGTTCTGCTCTCAACACAAGAAGGACGGGATGGTCTACCTCGTT
GGAACCAAGAAGGGTCGACTCAGCAGTGGTGACGATATTGTTGGCAGCGG
GTCTGGGCGTAGCGGTATTGCTGCAGTGGCTCACGCAGACACCGTGCGCC
GTGATGGCCACAAAAAGCGGAGAGGCCGCTTTTCGTCCTCCGCTCCAACG
ACGTCATCGTCGGGCAGGAGTACGGAGGACAACAAGCGGGCCCGCCGGGT
TCCCGCCGACTTGGCTATGGCTTCGGCAGAAGCACCGCGAAACGAGAGAG
CAACCACATCATCAGAGAGCAACGAGCGCCTTCCGGAGCCAGACGGCGTG
AAGATGGAGCCGGAGGCGTTTGCCATCGGAAGGCGAGGAAGCTGGATGTG
AGTTTGACAGTGGACGTCCCAAAAAAGGTGTTGCTGCCGTAGTCTAGACT
TTGGTTTTTATTGACACCATCAGTACGATCCTAAGGTTTTGTACCCACCC
ATCGTCTGTCCCTTGGGCAAATAGTGTGGCCTGGTCGTGCTACAACAGAA
CACAGCAGCAGAGAGTGATTTCCGCCTCGCCGTCACAGCATCCTCGCGGA
AGGCATGCATACATCGCCCGACATACAGCTGCCTCTACTTTATCCCGTGG
CACTGCTGTCAATTCCATGTATCAGATCCTTCGGTTCGATACGTTCCTTT
CCACCAGGTAAGGCGTGTCGCGGGCGGAGAATCGGAGAAGGCGACAGCAG
GGGAGCGGAAACACAAGTTTGACGAAAAAGCAGCAGCTGTCCCCTACGGT
ACCCAGAAATTGCGTGTTGTGTGTACGCCCGGAACCGCGTGCCGCGAACG
CCTTTGAAATGTGGTACGTGCAACTAGCACCATTTTTCTAGGCCGCCGTA
GGCTGTGTGATCGGCTATGAACTCGAGCAGAACTACTTGGAATCGCTCAA
TGTTTTCAATATCTTACTTCGATACGTTGTCGGGAGCGCTGAGGGGGGGG
GGGCTTGGTCCCTGCGGTTGGAGGTAACGAGGACGTAGGAGCATGGCGGT
GCAGTGAACAACAGGTGTGCGGGAGAAGCGTTTGAATGGGGGCTGGCTTC
AGAGAGAGAGCAAAACGGCGGGTGTCTTTTCTCTTAGTGTGACCGGAAGC
AGTATTGAGCAGCGCAATACCGCATAATTTTGCGCGCGCCTGCCCTTGAG
CTAGCCACTTCTGTGGAACGCGGGTTTCTGTTCGATATAAGCTGTCGTGA
GCGGCGAGGGGGGGAGAGGAGTAGTTTTCGTTTGAATACGATGGTCTTGT
GGTGTGGGTGTATCAGCGTACGTTTTCGAGCAGAGATTGCAAGAATTTTA
GGTTGCTTTGTTCGCGATTGGTCACGGAGCTTATCTTGGATTGGAGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10681:206..3252-

>mRNA_S-firma_F_contig10681.919.1 ID=mRNA_S-firma_F_contig10681.919.1|Name=mRNA_S-firma_F_contig10681.919.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3360bp|location=Sequence derived from alignment at S-firma_F_contig10681:206..3252- (Sphaerotrichia firma ET2_F female)
ATGCCCAGCAAGTGCCACCAGCCAGCCTGCACCAAGCGCCCGTTGTACGG
TGTACATAATGGAAGCAAGGCGCAGTTTTGCTCTCAACACAAGAAAGACG
GGATGGTGGATGTGAAGAGCAAGAAATGCGGCGAACAAGGGTGCAACAAG
GGGCCATCGTACGGCGTGGATGGTAGCAACAAGGGGGATTTCTGCTCTCA
ACACAAGAAGGACGGGATGGTGAACGTCATCAGCAAGAGGTGCAGCCAAC
AAGGTTGCACCAAGCACCCGTCATTTGGCGTGGATGGGAACACTAAGCCG
GAGTTCTGCTCTCAACACAAGAAGGACGGGATGGTGAATGTCATCAGCAA
GAGGTGCAGCCAACAAGGTTGCACCAAGCACCCGTCATTTGGCGTGGATG
GGAACGCTAAGCCGGAGTTCTGCTCTCAACACAAGAAGGACGGGATGGTA
CATAATGTGAAGGGCAAGAGGTGTAGTGAACAAGGTTGCACCAAGCAGCC
GTCGTTTGGCGTGGATGGTAGCGCTAAGCCGGAGTTCTGCTCTCAGCACA
TGAAGGACGGGATGGTACATGTGAAGGGCAAGAGGTGTGGCCAACAAGGT
TGCCCCAAGAAGCCGTCATTTGGCGTGGATGGTAGCGCTAAGCCGGAGTT
CTGCTCTCAACACAAGAAGGACGGGATGGTGGATGTAAAGGGCAAGAAGT
GCAGCCAACAACGTTGCCCCAAGCACCCATCATTTGGCGTGGAAGGTAGC
GCTAAGCCGGAGTTCTGCTCTGAGCACAAGAAGGACGGGATGGTGGATGT
GAAGGGCAAGAAGTGCAGCCAACAAGGTTGCACCAAGCAGCCGTCATTTG
GCGTGGATGGTAGCGCTAAGCCGGAGTTCTGCTCTGAGCACAAGAAGGAC
GGGATGGTGGATGTGAAGAGCAAGAAGTGCAGCCAACAAGGTTGCACCAA
GCACCCGTCGTTTGGCGTGGATGGGAAGGCTGAGCCTGAGTTCTGCTCTC
AACACAAGAAGGACGGGATGGTGGATGTGAAGAGCAAGAGGTGTGGCCAA
CAAGGTTGCCCCAAGCACCCGTCATTTGGCGTGGATGGTAGCACCAAGAA
GAGGGAGTTCTGTTCTCAACACAAGAAGGACGGGATGGTGAATTGTACCA
GGGGGAAGAGGTGCAGCCAACAAGGTTGCACCAAGCAGCCGTCATTTGGC
GTGGATGGTAGCCACAAGGGGCAGTTCTGCTCTCAACACAAGAAGGACGG
GATGGTGGATGTGAAGAGCAAGAAGTGCAGCCAACAAAGTTGCACCAAGC
AGCCGTCGTTTGGCGTGGATGGGAACGCTAAGCCGGAATGCCCAGCAAGT
GCCACCAGCCAGCCTGCACCAAGCGCCCGTTGTACGGTGTACATAATGGA
AGCAAGGCGCAGTTTTGCTCTCAACACAAGAAAGACGGGATGGTGGATGT
GAAGAGCAAGAAATGCGGCGAACAAGGGTGCAACAAGGGGCCATCGTACG
GCGTGGATGGTAGCAACAAGGGGGATTTCTGCTCTCAACACAAGAAGGAC
GGGATGGTGAACGTCATCAGCAAGAGGTGCAGCCAACAAGGTTGCACCAA
GCACCCGTCATTTGGCGTGGATGGGAACACTAAGCCGGAGTTCTGCTCTC
AACACAAGAAGGACGGGATGGTGAATGTCATCAGCAAGAGGTGCAGCCAA
CAAGGTTGCACCAAGCACCCGTCATTTGGCGTGGATGGGAACGCTAAGCC
GGAGTTCTGCTCTCAACACAAGAAGGACGGGATGGTACATAATGTGAAGG
GCAAGAGGTGTAGTGAACAAGGTTGCACCAAGCAGCCGTCGTTTGGCGTG
GATGGTAGCGCTAAGCCGGAGTTCTGCTCTCAGCACATGAAGGACGGGAT
GGTACATGTGAAGGGCAAGAGGTGTGGCCAACAAGGTTGCCCCAAGAAGC
CGTCATTTGGCGTGGATGGTAGCGCTAAGCCGGAGTTCTGCTCTCAACAC
AAGAAGGACGGGATGGTGGATGTAAAGGGCAAGAAGTGCAGCCAACAACG
TTGCCCCAAGCACCCATCATTTGGCGTGGAAGGTAGCGCTAAGCCGGAGT
TCTGCTCTGAGCACAAGAAGGACGGGATGGTGGATGTGAAGGGCAAGAAG
TGCAGCCAACAAGGTTGCACCAAGCAGCCGTCATTTGGCGTGGATGGTAG
CGCTAAGCCGGAGTTCTGCTCTGAGCACAAGAAGGACGGGATGGTGGATG
TGAAGAGCAAGAAGTGCAGCCAACAAGGTTGCACCAAGCACCCGTCGTTT
GGCGTGGATGGGAAGGCTGAGCCTGAGTTCTGCTCTCAACACAAGAAGGA
CGGGATGGTGGATGTGAAGAGCAAGAGGTGTGGCCAACAAGGTTGCCCCA
AGCACCCGTCATTTGGCGTGGATGGTAGCACCAAGAAGAGGGAGTTCTGT
TCTCAACACAAGAAGGACGGGATGGTGAATTGTACCAGGGGGAAGAGGTG
CAGCCAACAAGGTTGCACCAAGCAGCCGTCATTTGGCGTGGATGGTAGCC
ACAAGGGGCAGTTCTGCTCTCAACACAAGAAGGACGGGATGGTGGATGTG
AAGAGCAAGAAGTGCAGCCAACAAAGTTGCACCAAGCAGCCGTCGTTTGG
CGTGGATGGGAACGCTAAGCCGGATTCTGCTCTCAACACAAGAAGGACGG
GATGGTCTACCTCGTTGGAACCAAGAAGGGTCGACTCAGCAGTGGTGACG
ATATTGTTGGCAGCGGGTCTGGGCGTAGCGGTATTGCTGCAGTGGCTCAC
GCAGACACCGTGCGCCGTGATGGCCACAAAAAGCGGAGAGGCCGCTTTTC
GTCCTCCGCTCCAACGACGTCATCGTCGGGCAGGAGTACGGAGGACAACA
AGCGGGCCCGCCGGGTTCCCGCCGACTTGGCTATGGCTTCGGCAGAAGCA
CCGCGAAACGAGAGAGCAACCACATCATCAGAGAGCAACGAGCGCCTTCC
GGAGCCAGACGGCGTGATTCTGCTCTCAACACAAGAAGGACGGGATGGTC
TACCTCGTTGGAACCAAGAAGGGTCGACTCAGCAGTGGTGACGATATTGT
TGGCAGCGGGTCTGGGCGTAGCGGTATTGCTGCAGTGGCTCACGCAGACA
CCGTGCGCCGTGATGGCCACAAAAAGCGGAGAGGCCGCTTTTCGTCCTCC
GCTCCAACGACGTCATCGTCGGGCAGGAGTACGGAGGACAACAAGCGGGC
CCGCCGGGTTCCCGCCGACTTGGCTATGGCTTCGGCAGAAGCACCGCGAA
ACGAGAGAGCAACCACATCATCAGAGAGCAACGAGCGCCTTCCGGAGCCA
GACGGCGTGA
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