mRNA_S-firma_F_contig10668.905.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10668.905.1
Unique NamemRNA_S-firma_F_contig10668.905.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10668.905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10668contigS-firma_F_contig10668:1..4464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons9
Model size1045
Cds size1044
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.03316-CDS-S-firma_F_contig10668:0..541622815606.03316-CDS-S-firma_F_contig10668:0..54Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 1..54 +
1696949449.2358155-CDS-S-firma_F_contig10668:0..541696949449.2358155-CDS-S-firma_F_contig10668:0..54Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 1..54 +
1622815606.0444198-CDS-S-firma_F_contig10668:382..4781622815606.0444198-CDS-S-firma_F_contig10668:382..478Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 383..478 +
1696949449.248371-CDS-S-firma_F_contig10668:382..4781696949449.248371-CDS-S-firma_F_contig10668:382..478Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 383..478 +
1622815606.0540917-CDS-S-firma_F_contig10668:857..9351622815606.0540917-CDS-S-firma_F_contig10668:857..935Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 858..935 +
1696949449.2611327-CDS-S-firma_F_contig10668:857..9351696949449.2611327-CDS-S-firma_F_contig10668:857..935Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 858..935 +
1622815606.064551-CDS-S-firma_F_contig10668:1401..15211622815606.064551-CDS-S-firma_F_contig10668:1401..1521Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 1402..1521 +
1696949449.2699466-CDS-S-firma_F_contig10668:1401..15211696949449.2699466-CDS-S-firma_F_contig10668:1401..1521Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 1402..1521 +
1622815606.0762782-CDS-S-firma_F_contig10668:1801..19331622815606.0762782-CDS-S-firma_F_contig10668:1801..1933Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 1802..1933 +
1696949449.2787292-CDS-S-firma_F_contig10668:1801..19331696949449.2787292-CDS-S-firma_F_contig10668:1801..1933Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 1802..1933 +
1622815606.088042-CDS-S-firma_F_contig10668:2736..28621622815606.088042-CDS-S-firma_F_contig10668:2736..2862Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 2737..2862 +
1696949449.2869906-CDS-S-firma_F_contig10668:2736..28621696949449.2869906-CDS-S-firma_F_contig10668:2736..2862Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 2737..2862 +
1622815606.101811-CDS-S-firma_F_contig10668:3364..36191622815606.101811-CDS-S-firma_F_contig10668:3364..3619Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 3365..3619 +
1696949449.2952793-CDS-S-firma_F_contig10668:3364..36191696949449.2952793-CDS-S-firma_F_contig10668:3364..3619Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 3365..3619 +
1622815606.114196-CDS-S-firma_F_contig10668:3970..40261622815606.114196-CDS-S-firma_F_contig10668:3970..4026Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 3971..4026 +
1696949449.3035414-CDS-S-firma_F_contig10668:3970..40261696949449.3035414-CDS-S-firma_F_contig10668:3970..4026Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 3971..4026 +
1622815606.1273935-CDS-S-firma_F_contig10668:4337..44641622815606.1273935-CDS-S-firma_F_contig10668:4337..4464Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 4338..4464 +
1696949449.3120623-CDS-S-firma_F_contig10668:4337..44641696949449.3120623-CDS-S-firma_F_contig10668:4337..4464Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10668 4338..4464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10668.905.1prot_S-firma_F_contig10668.905.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10668 1..4464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10668.905.1

>prot_S-firma_F_contig10668.905.1 ID=prot_S-firma_F_contig10668.905.1|Name=mRNA_S-firma_F_contig10668.905.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=348bp
MSKELVLYEDMDGQIAPVGVVTMLVFLLVLTTVVLWVKLAKAQRLNSDLK
RRSASQRTDYAALEKTTETLQSKLSQLHRNAMLKDHRRCQRMSKREKARA
EETRELIRQLRAHAKEKLFEERRRNQAKDYRRGYRLLNREAAHHKRLEEA
QQALADAQTVVSLLRECAFASDTEVDRLRADKDVATKELAEAQELLQAET
TKLREAEAALAESGAAKVKVEQQLEAQQSEVVKVAMDNEELGKTLHALRE
QLEKGQEEYADFRVEGDRKLAAAAEELKREKASRTEEAQRFERELDKARQ
EVDKLRGELQSKRREVADMGRRLHEREAKLEVVDKAKATLESGCVSGG
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mRNA from alignment at S-firma_F_contig10668:1..4464+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10668.905.1 ID=mRNA_S-firma_F_contig10668.905.1|Name=mRNA_S-firma_F_contig10668.905.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4464bp|location=Sequence derived from alignment at S-firma_F_contig10668:1..4464+ (Sphaerotrichia firma ET2_F female)
ATGAGCAAGGAGCTTGTCCTTTACGAGGACATGGACGGCCAAATCGCACC
AGTGGTGAGCTTGTCTCCTCTCTTCTGTCGTGTCTAGAACGCATCGTCGT
CCATGCACAACGCGTGGCATAGACGAAGGTCCAGGTAACTTGGCTCATGC
GTATTGGTACTAGTATATTGCACTTGACCAACCAGTGCCCCTCGTCTCTC
TAGACGCATAGAATACGGTACGGCCGCTCCTCCGTAACGCTTGTTTTTTT
TCGCCGTAAACTTTGAATGCCGGATTCTGAAGCTACCGCCCCAGCAGAAC
CTGCACATGTCTCAGCCTAGCCTAACAGATGGCCCGATCAACCCCGCCGA
ATGACAAACATACCACCGGCACGCTACTACAGGGCGTCGTGACCATGCTC
GTCTTCCTGCTCGTGCTCACCACTGTCGTGCTGTGGGTGAAACTCGCGAA
GGCTCAGCGGCTCAACTCAGACCTCAAGGTACTTTTTTTTTTTTTCTCCC
ATTGTTGGATTCAGTGCTGTCTGTGAATGGTTCGTTTTGTTCGTCTGCTT
TCCGTCTGCACGTGGTAGGTTCGATCTGTACCGTGTTTGTCATTCGTGGG
TACTTGCAGTGGAGGAATGAAGAAACACAGGACAATGACAAGACGGGAGT
TGTGGAGGTTTTTGGTGTGTTCGACGAGCTCACATTCAAACCTTCCCAAG
GCAGAGCCCAAGGCGTACATCCCACTTGGCTCACCCTTCCTGTCGCCTCC
GATTTGCTCTCCTCTTCCCTCAACCCCTTTTCGCTATGGTCAACGACCAC
ACCGAGCAACGCTTGTCTCCCACGTGTACCTCCCTCCGCCCCATCTCTTC
GTTGCAGCGTCGGAGTGCGTCTCAGCGGACCGACTATGCCGCCCTTGAGA
AGACCACAGAGACGCTGCAGAGCAAGCTGAGCCAGGTGCTATGTTGATAT
TTTGACTCGAGGTCTGCTTTCTGGTTGTCTCTTCTGTAGTTGTTTGGAGC
GCGCACACGATGTGTGTCTGCTTGGGGTTGAGTTGTGTGTTTTCGGTGCA
TCGTATTGGAATATCCGGTGTGTGTGTGGTGCCTTCCTATAACAAGCGCG
GCAGTTCCCTCACTCGGTGTTTCTGCCAGCACACATCCCAGCGCGATCTC
ATTTGTTTGTTTGTAGGAGTTTGAGAACGCTATGCTGGCGTTCCGGACGA
TTTTGTCTGAAAAGCCGACTTTTGGCATCTTTGGCATCTGTCTGACCTGT
GCGCTCAACCTGTACCAGTCGCCGGACCATGCTGCATGCACACTCCTGCC
GTAGACATTCGCCGTCTCGCGCCAGGCTTGGGTCAGCGCGTCTACTCATC
TGCTTCCCCCTTTCGCCCTTTGCGTCCCCGGTGTTTTGTGATCACACGAA
GCTTCATCGAAACGCAATGCTGAAGGACCATCGACGTTGCCAGAGGATGT
CCAAGCGGGAAAAAGCTCGCGCGGAGGAAACCCGCGAGCTGATCCGCCAG
CTCAGGGCACACGCGAAAGAGGTGAGGGTTGTCGTGTTGGCGCGTTGAGA
TAGCATGTGATTGTGATTGATCCTTGTTTCTTGTTCCCTCGTGCTGCTGC
TTGAATTGTGGTTTTTCCGTGCCGCGAGTAGAGACCTGCTTCACTTTGTT
TCGCAAGCAGGCGTGCGGCGTGGAAGGAGCGCTAGGTTGTCCGCAGGTGC
GTGTATGCCGTATGAAAGGCAGCTCGGTCCACACCTTTCCCGCTCTTTTC
CTCTTTGCCCTCCGCCACGCCCCCCCCCCCCGGTTACTTGTGGCGACCAA
GAAATTGTTTGAGGAGCGGCGGCGGAACCAAGCCAAGGACTATCGCCGAG
GCTACAGGCTGCTCAACCGGGAGGCGGCCCACCACAAGCGCCTCGAAGAG
GCTCAGCAGGCGTTGGCCGACGCGCAGACGGTGGTGCGTGTGCGTGTGTG
TGCAGGCAGTCGAATAGTAGCTCTTTTGGGTGCGCTTCGTTTCTATTGTA
CTGACGTGCGCCGTATTTGGCTCTTGCGCACGTGACTTGTTTGCCCGAGT
TCGCGGGTGTTGCCGGCAGAAGCTTGCTGCGGCGGTTTTTGAGGTGGTGC
CTGATGTGTTGATGCTGTAACACCGGAGTGCTTTCCTACCTGCGTCCGAG
AGTTGTCGCTGTGGTTGTTTTGGTGCTGGAACTGTTTGGTCGACATTGTC
GGTGCTGATAGTCCTTCCTGACGGACGTTGTGTTTGGTGGCGACAAAGGT
TTGGAAATAGTTGCCGTTGGTTGCACTTCTGAACATCGTCGCGGATGGCA
ACCAATAGAAGCCGCCTTGCTGAGATCAGAACGGTGCGATGTTTTTGTCG
TTTAGAAGAAAGCATCGACGCCCGAAAACAGGCGTCTGTCCCTCAAGTCT
ATGCTTCTCAAGTCTATGCTTCCATCGCCCGAGAATGCTCCGTGCCTCGG
TCCGGCCTCGTTCTGCTTTTTCTTCCTGCGTTGATGCCACTGTCCTGTGG
CTAGTGTCCTCGACGATTATCGAAAGCTCCAATAGTCAAACTCCGCGAAC
AATGGACGGCCCTCCGATTCGCGTGTTGATTTATTTCGTTTCCAAGCGAA
TCATCATACCTTTTCTCCAGCCATCCCCATCTAGAGTACGAAATGCTAGC
ACGGCACCAGACCCAAGCACGCGGCTCAGGCTAGAGAACCAACACTTTGC
ACGGCCTGCCTGCACCTGCCCCCTCCCTTTTCTCAGGTATCCCTCCTCAG
GGAATGCGCCTTTGCTTCTGACACCGAAGTGGACCGACTGCGGGCGGACA
AGGACGTCGCCACCAAGGAGCTCGCTGAGGCGCAAGAGCTCCTGCAGGCC
GAGACCACCAAGGTGATAATATGTTGCGTGCGTGTTGTGCGCGAATGGGG
GTGTACATTAGTGCTTCAAGGTGATGCTGATGGCGCAAGATGGAAATGTT
GATTTCCGCATCTCAGGCTCACGTAGTTGACTCGGATTTTGTTTCTTGTC
CTGCACGATTCTTGCCAGCCCGTGCGCTGCATACGCAGTGCAACACGGAC
CAGAGTCCATCGATCATGATGCAACAACGCAGAGTAGGGAGCAAAGCCGG
AATACGGCCGGCCCAACACCGCAGCATCCTGTACGCAGGAGCGCATCGCG
CCTTGGCGGTGAGGTAGAGTTTCAACGGGTGCGCACACCGCTTTTCGATT
TTCGACTCCCTCCAACCGTGTCACCAGACGTATCTTCCGGCGAGACAGGA
ATGGATGTTGCCCGACAGGAACGTTCACTACTGCTGTGAGCTGTCGTCGC
TTGAGCCCCGCCCCGCACCTGTCGTCTTTCCCGCCCTCTGATGCCTCGGC
CGCTCTCGGAAAAGCTGAGGGAAGCCGAGGCCGCCCTCGCCGAATCAGGC
GCCGCTAAGGTGAAGGTAGAGCAGCAGCTGGAGGCGCAGCAAAGCGAGGT
GGTCAAGGTGGCGATGGACAACGAGGAGCTGGGCAAGACTCTCCATGCTC
TGCGAGAGCAGCTCGAGAAGGGCCAAGAGGAGTATGCTGACTTCAGGGTG
GAAGGGGACAGGAAGTTGGCAGCTGCCGCGGAGGAGCTGAAGCGCGAGAA
GGCTTCTCGGACCGAAGAGGTGAGGCTGTTGGTCAGTCAGTCGGTTGTGT
CGCTGCTGCGGTTGATGGTGATGTTGGTGTTGATGTTGACCGGCGAGCTT
GGTTGCTTCTGCCCGGCTTGTACGCGCTCTAGTTTCGTCGTCGGGCATTG
GGAAACCGCCGACATTTTGACCATTCCCAGGTATGGTAGGGTTTTGTACC
TGTGTGGTAAAAGCGCCGCCCTTGAACGTCACGGAGCCCATCGAGCAAGT
AGGCATAGGCGTGGAACGGGCCAGACAGCAAAGCAGAGCTTGCACACCCG
TTATCATGCCGCCGTCTCTTGGTGCCTTCGCCGCAACCGATATCGATTAC
GCGATTGCCCGGTGCCACAGGCGCAACGTTTCGAGCGAGAGCTCGACAAG
GCCCGGCAGGAGGTGGACAAGCTGAGGTGAGGGAGGTTGTTGGCTTAGAG
CTTGAGCTTGTTCGGGTCGTTTGGCACGTTGACGTTTGGGTGGGTTTGTT
AAAAGTTTTATTGTTCGACTGGCGGACCTTCTGTTGGAGCCGTTTGCCCA
TTTTTTCGCTCGTGGTTGGTTGCACTCAGGCCTTCGACGGACCTCCCCTA
GCTTTTACGCGTTCGGAAGTTTCTCGTTCTCTTGCTCGGGGAGAGGCAGC
ACCGTTTTGGGAGAAGGGAAATGACGGTGAACATCGAAAGGTCGAACTGG
ACCTGATTTGTTCTCTCGCGTGGTTGTACTACCCCAGGGGCGAGCTGCAG
TCGAAGAGGCGGGAAGTCGCAGACATGGGTCGTCGTCTGCATGAGAGGGA
GGCCAAGCTGGAGGTTGTAGACAAGGCGAAGGCCACCCTCGAGTCCGGGT
GTGTGTCAGGAGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10668:1..4464+

>mRNA_S-firma_F_contig10668.905.1 ID=mRNA_S-firma_F_contig10668.905.1|Name=mRNA_S-firma_F_contig10668.905.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2088bp|location=Sequence derived from alignment at S-firma_F_contig10668:1..4464+ (Sphaerotrichia firma ET2_F female)
ATGAGCAAGGAGCTTGTCCTTTACGAGGACATGGACGGCCAAATCGCACC
AGTGATGAGCAAGGAGCTTGTCCTTTACGAGGACATGGACGGCCAAATCG
CACCAGTGGGCGTCGTGACCATGCTCGTCTTCCTGCTCGTGCTCACCACT
GTCGTGCTGTGGGTGAAACTCGCGAAGGCTCAGCGGCTCAACTCAGACCT
CAAGGGCGTCGTGACCATGCTCGTCTTCCTGCTCGTGCTCACCACTGTCG
TGCTGTGGGTGAAACTCGCGAAGGCTCAGCGGCTCAACTCAGACCTCAAG
CGTCGGAGTGCGTCTCAGCGGACCGACTATGCCGCCCTTGAGAAGACCAC
AGAGACGCTGCAGAGCAAGCTGAGCCAGCGTCGGAGTGCGTCTCAGCGGA
CCGACTATGCCGCCCTTGAGAAGACCACAGAGACGCTGCAGAGCAAGCTG
AGCCAGCTTCATCGAAACGCAATGCTGAAGGACCATCGACGTTGCCAGAG
GATGTCCAAGCGGGAAAAAGCTCGCGCGGAGGAAACCCGCGAGCTGATCC
GCCAGCTCAGGGCACACGCGAAAGAGCTTCATCGAAACGCAATGCTGAAG
GACCATCGACGTTGCCAGAGGATGTCCAAGCGGGAAAAAGCTCGCGCGGA
GGAAACCCGCGAGCTGATCCGCCAGCTCAGGGCACACGCGAAAGAGAAAT
TGTTTGAGGAGCGGCGGCGGAACCAAGCCAAGGACTATCGCCGAGGCTAC
AGGCTGCTCAACCGGGAGGCGGCCCACCACAAGCGCCTCGAAGAGGCTCA
GCAGGCGTTGGCCGACGCGCAGACGGTGAAATTGTTTGAGGAGCGGCGGC
GGAACCAAGCCAAGGACTATCGCCGAGGCTACAGGCTGCTCAACCGGGAG
GCGGCCCACCACAAGCGCCTCGAAGAGGCTCAGCAGGCGTTGGCCGACGC
GCAGACGGTGGTATCCCTCCTCAGGGAATGCGCCTTTGCTTCTGACACCG
AAGTGGACCGACTGCGGGCGGACAAGGACGTCGCCACCAAGGAGCTCGCT
GAGGCGCAAGAGCTCCTGCAGGCCGAGACCACCAAGGTATCCCTCCTCAG
GGAATGCGCCTTTGCTTCTGACACCGAAGTGGACCGACTGCGGGCGGACA
AGGACGTCGCCACCAAGGAGCTCGCTGAGGCGCAAGAGCTCCTGCAGGCC
GAGACCACCAAGCTGAGGGAAGCCGAGGCCGCCCTCGCCGAATCAGGCGC
CGCTAAGGTGAAGGTAGAGCAGCAGCTGGAGGCGCAGCAAAGCGAGGTGG
TCAAGGTGGCGATGGACAACGAGGAGCTGGGCAAGACTCTCCATGCTCTG
CGAGAGCAGCTCGAGAAGGGCCAAGAGGAGTATGCTGACTTCAGGGTGGA
AGGGGACAGGAAGTTGGCAGCTGCCGCGGAGGAGCTGAAGCGCGAGAAGG
CTTCTCGGACCGAAGAGCTGAGGGAAGCCGAGGCCGCCCTCGCCGAATCA
GGCGCCGCTAAGGTGAAGGTAGAGCAGCAGCTGGAGGCGCAGCAAAGCGA
GGTGGTCAAGGTGGCGATGGACAACGAGGAGCTGGGCAAGACTCTCCATG
CTCTGCGAGAGCAGCTCGAGAAGGGCCAAGAGGAGTATGCTGACTTCAGG
GTGGAAGGGGACAGGAAGTTGGCAGCTGCCGCGGAGGAGCTGAAGCGCGA
GAAGGCTTCTCGGACCGAAGAGGCGCAACGTTTCGAGCGAGAGCTCGACA
AGGCCCGGCAGGAGGTGGACAAGCTGAGGCGCAACGTTTCGAGCGAGAGC
TCGACAAGGCCCGGCAGGAGGTGGACAAGCTGAGGGGCGAGCTGCAGTCG
AAGAGGCGGGAAGTCGCAGACATGGGTCGTCGTCTGCATGAGAGGGAGGC
CAAGCTGGAGGTTGTAGACAAGGCGAAGGCCACCCTCGAGTCCGGGTGTG
TGTCAGGAGGGGGGCGAGCTGCAGTCGAAGAGGCGGGAAGTCGCAGACAT
GGGTCGTCGTCTGCATGAGAGGGAGGCCAAGCTGGAGGTTGTAGACAAGG
CGAAGGCCACCCTCGAGTCCGGGTGTGTGTCAGGAGGG
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